CIR0383, CIR0383 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0383
AliasCIR383
Genbank IDAJ567310
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567310
Source Typegenomic
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 51
Primer 1CIR383_F: ATTTCAATTTGCGATTTC
Primer 2CIR383_R: CAACTTACATTTTATACACAC
Product Length108
PolymorphismP_ CIR0383
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567310
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567310AJ567310Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch23_Dt.09N/A138.8CIR383View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch23_Dt.09N/A102.9CIR383View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch23_Dt.09N/A43.82CIR383View
4TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A107.41CIR383View
5Yumian-1 x T586, RIL (2006)AD_ch23_Dt.09N/A39.9CIR383View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch23_Dt.09N/A18.5CIR383View
7Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A10.5CIR383View
8TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A36.1CIR383View
9AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A57cir0383View
10Yumian-1 x T586, RIL (2009)AD_ch09_At.09N/A38.5CIR383/110t(C23)View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A80.96CIR383View
12TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A36.14CIR383View
13Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A14CIR383View
Sequence
>CIR0383 ID=CIR0383; Name=CIR0383; organism=Gossypium hirsutum; type=genetic_marker; length=108bp
ATTTCAATTTGCGATTTCATCAAATTTGTACTTTCACGCAATTGACAATC
ATTGAGCTGAGGGTTTTATATATATATGTGTGTGTGTGTGTGTATAAAAT
GTAAGTTG