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Marker Overview
Name | CGR5880 |
Alias | CGR5880=RC(NBRI_GE36447) NBRI_GE36447
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Genbank ID | GQ393817 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 33 B |
Source Sequence | MONCS0782
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Source Type | genomic |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CGR5880_F: CAGCATCGGTTCCAGTTCTT |
Primer 2 | CGR5880_R: CAGCATGGATGAATTAGAGGG |
Publication | [view all] |
Contact | Monsanto
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Comment | Primer data obtained in 2009-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Yumian-1 x T586, RIL (2015) | AD_ch16_Dt.07 | N/A | 104 | CGR5880 | View |
2 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch07_At.07 | N/A | 21.7 | CGR5880 | View |
3 | W10 x TM-1, F2:3 (2015) | AD_ch07_At.07 | N/A | 58 | CGR5880 | View |
4 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch07_At.07 | N/A | 98.7 | CGR5880 | View |
5 | Monsanto SSR Bin Map, (2009) | AD_ch07_At.07 | N/A | 21 | CGR5880 | View |
6 | LMY22 x LY343, RIL (2016) | chr.16 | N/A | 1.8 | CGR5880 | View |
7 | LMY22 x LY343, RIL (2020) | D07 | N/A | 5.64 | CGR5880 | View |
8 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch07_At.07 | N/A | 26.9 | CGR5880b | View |
9 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch16_Dt.07 | N/A | 165.4 | CGR5880a | View |
10 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch07_At.07 | N/A | 75.19 | CGR5880b | View |
11 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch16_Dt.07 | N/A | 122.21 | CGR5880 | View |
12 | MGG-293-793, MAGIC (2018) | AD_ch16_Dt.07 | N/A | 65.1 | CGR5880 | View |
13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch07_At.07 | N/A | 55.1 | cgr5880-140 | View |
Sequence
>CGR5880 ID=CGR5880; Name=CGR5880; organism=Gossypium hirsutum; type=genetic_marker; length=146bp CAGCATCGGTTCCAGTTCTTTTTGCCTTGGCTCTTTTCTCTTGGCCTCTT CCTCCTCCCCTTTCGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCGTTAACCCCAAATCTTTACTCCCTCTAATTCATCCATGCTG
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