CGR5880, CGR5880 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5880
AliasCGR5880=RC(NBRI_GE36447)
NBRI_GE36447
Genbank IDGQ393817
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0782
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5880_F: CAGCATCGGTTCCAGTTCTT
Primer 2CGR5880_R: CAGCATGGATGAATTAGAGGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393817
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:50651885..50652030 -
CM018221.1chromosomeCM018221.1:48894879..48895014 -
CM018208.1chromosomeCM018208.1:85562514..85562648 -
D5_07chromosomeD5_07:45058969..45059108 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:89255268..89255406 -
D10_07chromosomeD10_07:7536771..7536904 +
CM016620.1chromosomeCM016620.1:12269933..12270062 +
Dt_chr1chromosomeDt_chr1:80309209..80309354 +
D07chromosomeD07:47856031..47856176 -
Ghir_D06chromosomeGhir_D06:9741018..9741114 +
Ghir_D07chromosomeGhir_D07:52072281..52072428 -
Ghir_D07chromosomeGhir_D07:52128108..52128199 -
Ghir_A07chromosomeGhir_A07:89888433..89888559 -
Ghir_A07chromosomeGhir_A07:89937422..89937510 -
D07chromosomeD07:51308218..51308363 -
D07chromosomeD07:51528291..51528436 -
D07chromosomeD07:48007276..48007417 -
A07chromosomeA07:85425199..85425361 -
scaffold923supercontigscaffold923:65398..65494 +
scaffold1153supercontigscaffold1153:84254..84389 -
scaffold1153supercontigscaffold1153:125335..125423 -
scaffold11193supercontigscaffold11193:37042..37138 -
Gbar_D06chromosomeGbar_D06:9202567..9202663 +
Gbar_A03chromosomeGbar_A03:56751604..56751700 +
Gbar_D07chromosomeGbar_D07:49163018..49163151 -
Gbar_D07chromosomeGbar_D07:49200583..49200673 -
Gbar_A07chromosomeGbar_A07:84924046..84924178 -
Gbar_A07chromosomeGbar_A07:84970334..84970422 -
D07chromosomeD07:49985078..49985235 -
A07chromosomeA07:86934083..86934217 -
CM017629.1chromosomeCM017629.1:49666377..49666524 -
CM017616.1chromosomeCM017616.1:88728627..88728777 -
CM017655.1chromosomeCM017655.1:50626985..50627134 -
CM017642.1chromosomeCM017642.1:91459070..91459206 -
CM017707.1chromosomeCM017707.1:49801719..49801862 -
CM017694.1chromosomeCM017694.1:86947146..86947278 -
D07chromosomeD07:52068977..52069122 -
Chr07chromosomeChr07:92226677..92226811 -
Chr07chromosomeChr07:93598017..93598155 -
Chr07chromosomeChr07:7246463..7246602 +
B_07chromosomeB_07:74787510..74787641 -
Chr01chromosomeChr01:48738006..48738143 -
chr01chromosomechr01:37126540..37126758 -
Chr01chromosomeChr01:48383532..48383685 -
Chr01chromosomeChr01:33994531..33994761 -
Chr01chromosomeChr01:26987795..26988043 -
Chr01chromosomeChr01:27008374..27008552 -
E07chromosomeE07:11073854..11074009 +
F07chromosomeF07:75069530..75069651 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0782MONCS0782Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch16_Dt.07N/A104CGR5880View
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch07_At.07N/A21.7CGR5880View
3W10 x TM-1, F2:3 (2015)AD_ch07_At.07N/A58CGR5880View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A98.7CGR5880View
5Monsanto SSR Bin Map, (2009)AD_ch07_At.07N/A21CGR5880View
6LMY22 x LY343, RIL (2016)chr.16N/A1.8CGR5880View
7LMY22 x LY343, RIL (2020)D07N/A5.64CGR5880View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A26.9CGR5880bView
9CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A165.4CGR5880aView
10CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A75.19CGR5880bView
11CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A122.21CGR5880View
12MGG-293-793, MAGIC (2018)AD_ch16_Dt.07N/A65.1CGR5880View
13TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A55.1cgr5880-140View
Sequence
>CGR5880 ID=CGR5880; Name=CGR5880; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
CAGCATCGGTTCCAGTTCTTTTTGCCTTGGCTCTTTTCTCTTGGCCTCTT
CCTCCTCCCCTTTCGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCGTTAACCCCAAATCTTTACTCCCTCTAATTCATCCATGCTG