CGR5548, CGR5548 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5548
Genbank IDGQ393551
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0516
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5548_F: GCCTGTTTCCGATGAATACG
Primer 2CGR5548_R: GCCCATGGACTGAAACTGAT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393551
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:65346958..65347105 -
A10chromosomeA10:108871564..108871735 -
CM018224.1chromosomeCM018224.1:63674209..63674383 +
CM018224.1chromosomeCM018224.1:63659252..63659420 +
CM018211.1chromosomeCM018211.1:106968484..106968655 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:3448930..3449101 +
D10_10chromosomeD10_10:2658945..2659122 +
D10_10chromosomeD10_10:2652004..2652178 +
scaffold1227.1supercontigscaffold1227.1:8563..8731 -
D10chromosomeD10:61409692..61409860 -
D10chromosomeD10:61393471..61393618 -
A10chromosomeA10:97850622..97850793 -
Ghir_D10chromosomeGhir_D10:65073416..65073584 -
Ghir_D10chromosomeGhir_D10:65058467..65058614 -
Ghir_A10chromosomeGhir_A10:111723428..111723599 -
D10chromosomeD10:64314589..64314757 -
D10chromosomeD10:64301005..64301152 -
A10chromosomeA10:112179111..112179282 -
D10chromosomeD10:63337902..63338070 -
D10chromosomeD10:63322964..63323111 -
A10chromosomeA10:111832235..111832406 -
D10chromosomeD10:61624459..61624628 -
D10chromosomeD10:61639407..61639578 -
At10chromosomeAt10:103879684..103879855 -
scaffold5969supercontigscaffold5969:271558..271732 +
scaffold5969supercontigscaffold5969:220689..220863 +
scaffold11599supercontigscaffold11599:72962..73133 -
Gbar_D10chromosomeGbar_D10:62635772..62635946 -
Gbar_D10chromosomeGbar_D10:62660396..62660564 -
Gbar_A10chromosomeGbar_A10:107253426..107253597 -
D10chromosomeD10:63445193..63445367 -
D10chromosomeD10:63462130..63462304 -
A10chromosomeA10:108631707..108631878 -
CM017632.1chromosomeCM017632.1:63612539..63612707 -
CM017632.1chromosomeCM017632.1:63597614..63597761 -
CM017619.1chromosomeCM017619.1:107938903..107939074 -
CM017658.1chromosomeCM017658.1:64754252..64754438 -
CM017658.1chromosomeCM017658.1:64769196..64769367 -
CM017645.1chromosomeCM017645.1:115666313..115666484 -
CM017710.1chromosomeCM017710.1:64317216..64317390 -
CM017710.1chromosomeCM017710.1:64341933..64342107 -
CM017697.1chromosomeCM017697.1:110220639..110220810 -
D10chromosomeD10:66708957..66709125 +
D10chromosomeD10:66723923..66724070 +
A10chromosomeA10:115012493..115012664 -
Chr10chromosomeChr10:124817452..124817623 -
Chr10chromosomeChr10:120782076..120782247 -
B_10chromosomeB_10:3827197..3827368 +
Chr11_5113110chromosomeChr11_5113110:2995..3178 +
Chr11chromosomeChr11:63053442..63053628 -
Chr11chromosomeChr11:63072060..63072231 -
E10chromosomeE10:4154638..4154809 +
F10chromosomeF10:92037516..92037687 -
Chr10chromosomeChr10:587415..587586 -
Chr11chromosomeCGR5548:6..477 .
Chr11:60115511..60115981 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0516MONCS0516Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A158.9CGR5548View
2W10 x TM-1, F2:3 (2015)AD_ch20_Dt.10N/A59.5CGR5548View
3GX1135 x GX100-2, RIL (2016)AD_ch20_Dt.10N/A1.7CGR5548View
4GX1135 x VGX100-2, RIL (2016)AD_ch20_Dt.10N/A0CGR5548View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A24.7CGR5548View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A37.8CGR5548View
7Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A0CGR5548View
8(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A105.1MON_CGR5548View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A117.88CGR5548View
Sequence
>CGR5548 ID=CGR5548; Name=CGR5548; organism=Gossypium hirsutum; type=genetic_marker; length=170bp
GCCTGTTTCCGATGAATACGGTAATTATTATATGTTTGATAATAATCCCA
CACTTCCAGCAGGTTCCAAATTATGATGATTTTGTAACAAATGCTGCTGC
TGCTGCTGCTGCTGCTCCTGCTCCATTTTCTTCAACGTTTCCTCTTGATA
ATCAGTTTCAGTCCATGGGC