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Marker Overview
Name | BNL3140 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3140_orig
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Source Type | genomic |
Repeat Motif | (GA)11 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3140_F: CACCATTGTGGCAACTGAGT |
Primer 2 | BNL3140_R: GGAAAAGGGAAAGCCATTGT |
Polymorphism | P_ BNL3140 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch23_Dt.09 | N/A | 65.6 | BNL3140 | View |
2 | 7235 x TM-1, RIL (2007) | AD_ch23_Dt.09 | N/A | 40.1 | BNL3140 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch03_At.03 | N/A | 38.48 | BNL3140 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch03_At.03 | N/A | 25.61 | BNL3140 | View |
5 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch23_Dt.09 | N/A | 138.1 | BNL3140 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch23_Dt.09 | N/A | 121 | BNL3140 | View |
7 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch23_Dt.09 | N/A | 60.5 | BNL3140 | View |
8 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch23_Dt.09 | N/A | 39.8 | BNL3140 | View |
9 | Yumian-1 x T586, RIL (2006) | AD_ch23_Dt.09 | N/A | 7.1 | BNL3140 | View |
10 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch23_Dt.09 | N/A | 87.4 | BNL3140 | View |
11 | 7235 x TM-1, F2:3 (2005) | AD_ch23_Dt.09 | N/A | 53.9 | BNL3140 | View |
12 | HS427-10 x TM-1, F2:3 (2005) | AD_ch23_Dt.09 | N/A | 29.1 | BNL3140 | View |
13 | Yumian-1 x T586, RIL (2015) | AD_ch23_Dt.09 | N/A | 55.2 | BNL3140 | View |
14 | Yumian-1 x 7235, RIL (2015) | AD_ch23_Dt.09 | N/A | 67 | BNL3140 | View |
15 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch23_Dt.09 | N/A | 46.7 | BNL3140 | View |
16 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch09_At.09 | N/A | 99.5 | BNL3140 | View |
17 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch23_Dt.09 | N/A | 64.2 | BNL3140 | View |
18 | 901-001 x sGK156, F2 (2019) | AD_ch09_At.09 | N/A | 37.48 | BNL3140 | View |
19 | LMY22 x LY343, RIL (2020) | D09 | N/A | 57.79 | BNL3140 | View |
20 | TM-1 x 3-79, RIL (2012) | AD_ch23_Dt.09 | N/A | 69.09 | BNL3140a | View |
21 | TM-1 x 3-79, RIL (2014) | AD_ch23_Dt.09 | N/A | 74.4 | BNL3140a | View |
22 | Monsanto SSR Bin Map, (2009) | AD_ch09_At.09 | N/A | 61 | BNL3140a | View |
23 | Monsanto SSR Bin Map, (2009) | AD_ch23_Dt.09 | N/A | 41 | BNL3140b | View |
24 | TM-1 x 3-79, RIL (2012) | AD_ch09_At.09 | N/A | 73.21 | BNL3140c | View |
25 | TM-1 x 3-79, RIL (2014) | AD_ch09_At.09 | N/A | 69 | BNL3140c | View |
26 | TM-1 x Hai-7124, BC1 (2007) | AD_ch23_Dt.09 | N/A | 100.3 | BNL3140-175 | View |
27 | TM-1 x Hai-7124, BC1 (2008) | AD_ch23_Dt.09 | N/A | 99.88 | BNL3140-175 | View |
28 | TM-1 x Hai-7124, BC1 (2012) | AD_ch23_Dt.09 | N/A | 97.6 | BNL3140-175 | View |
29 | Yumian-1 x T586, RIL (2009) | AD_ch23_Dt.09 | N/A | 7.1 | BNL3140/100t(C23) | View |
30 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch23_Dt.09 | N/A | 133.42 | BNL3140 | View |
31 | TM-1 x 3-79, RIL (2012.v3) | AD_ch09_At.09 | N/A | 68.99 | BNL3140c | View |
32 | TM-1 x 3-79, RIL (2012.v3) | AD_ch23_Dt.09 | N/A | 74.41 | BNL3140a | View |
Sequence
>BNL3140 ID=BNL3140; Name=BNL3140; organism=Gossypium hirsutum; type=genetic_marker; length=107bp CACCATTGTGGCAACTGAGTTTTTTCTAATAAAAAAGCAAAGAGAAAGTG CTAATATATATGGAGAGAGAGAGAGAGAGAGAGAGTCACAATGGCTTTCC CTTTTCC
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