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Marker Overview
| Name | BNL2921 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL2921_orig
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| Source Type | genomic |
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| Repeat Motif | (AG)10 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL2921_F: CGAGAGATTTTAAAGGGAAACA |
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| Primer 2 | BNL2921_R: GGGAGTGGTCTGATGGAAAA |
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| Polymorphism | P_ BNL2921 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 45_FISH_GEN-178-1117_fig2.jpg | BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117] |
| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch01_At.01 | N/A | 73.6 | BNL2921 | View |
| 2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch01_At.01 | N/A | 115.3 | BNL2921 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch01_At.01 | N/A | 39.05 | BNL2921 | View |
| 4 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch01_At.01 | N/A | 69.5 | BNL2921 | View |
| 5 | Palmeri x K-101, F2 (2007) | AD_ch01_At.01 | N/A | 100 | BNL2921 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 46 | BNL2921 | View |
| 7 | TM-1 x 3-79, RIL (2012) | AD_ch01_At.01 | N/A | 63.24 | BNL2921 | View |
| 8 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch01_At.01 | N/A | 0 | BNL2921 | View |
| 9 | Emian-22 x 3-79, BC1 (2011) | AD_ch01_At.01 | N/A | 39.13 | BNL2921 | View |
| 10 | DH962 x Jinmian-6, F2 (2009) | AD_chU | N/A | 101.1 | BNL2921 | View |
| 11 | Yumian-1 x 7235, RIL (2015) | AD_ch01_At.01 | N/A | 46.4 | BNL2921 | View |
| 12 | DH962 X Ji Mian 5, F2 (2015) | AD_ch01_At.01 | N/A | 94.89 | BNL2921 | View |
| 13 | DH962 X Ji Mian 5, F2 (2015) | AD_ch15_Dt.01 | N/A | 94.89 | BNL2921 | View |
| 14 | TM-1 x 3-79, RIL (2014) | AD_ch01_At.01 | N/A | 81.1 | BNL2921 | View |
| 15 | DH962 x Ji Mian 5, RIL (2015) | AD_ch01_At.01 | N/A | 38.2 | BNL2921 | View |
| 16 | DH962 x Ji Mian 5, RIL (2015) | AD_ch15_Dt.01 | N/A | 38.2 | BNL2921 | View |
| 17 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch01_At.01 | N/A | 124.9 | BNL2921 | View |
| 18 | Monsanto SSR Bin Map, (2009) | AD_ch01_At.01 | N/A | 81 | BNL2921 | View |
| 19 | Deltapine-61 x Texas-701, F2 (2007) | AD_ch01_At.01 | N/A | 35.7 | BLN2921-159 | View |
| 20 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch01_At.01 | N/A | 66 | BNL2921b | View |
| 21 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch01_At.01 | N/A | 0 | BNL2921-154 | View |
| 22 | TM-1 x Hai-7124, BC1 (2008) | AD_ch01_At.01 | N/A | 71.55 | BNL2921-160 | View |
| 23 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch01_At.01 | N/A | 10 | BNL2921-160 | View |
| 24 | TM-1 x Hai-7124, BC1 (2007) | AD_ch01_At.01 | N/A | 69.1 | BNL2921-160 | View |
| 25 | TM-1 x Hai-7124, BC1 (2012) | AD_ch01_At.01 | N/A | 62.1 | BNL2921-160 | View |
| 26 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch01_At.01 | N/A | 35.12 | BNL2921 | View |
| 27 | TM-1 x 3-79, RIL (2012.v3) | AD_ch01_At.01 | N/A | 81.14 | BNL2921 | View |
| 28 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch01_At.01 | N/A | 72.5 | BNL2921 | View |
Sequence
>BNL2921 ID=BNL2921; Name=BNL2921; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
CGAGAGATTTTAAAGGGAAACAAGTAAGAGAGAGAGAGAGAGAGAGCTCT
CAATTCGGGTGAAGAATGAGTAAAACATGAGGTAGTTGCAAAGTTTTTAA
AACTGAAAACCCTCACCTGATTTTCAAAATTTGGAGAATTTTCCATCAGA
CCACTCCC
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