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Marker Overview
Name | BNL1030 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL1030_orig
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Source Type | genomic |
Repeat Motif | (GT)16, (CA)13 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL1030_F: TTTGGAGCCATTTACATGCA |
Primer 2 | BNL1030_R: AAACCACTTCTGCATCTGGA |
Polymorphism | P_ BNL1030 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | 7235 x TM-1, RIL (2007) | AD_ch23_Dt.09 | N/A | 18.9 | BNL1030 | View |
2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch09_At.09 | N/A | 55.7 | BNL1030 | View |
3 | Emian-22 x 3-79, BC1 (2011) | AD_ch09_At.09 | N/A | 123.36 | BNL1030 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch09_At.09 | N/A | 87.42 | BNL1030 | View |
5 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch09_At.09 | N/A | 19.5 | BNL1030 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch23_Dt.09 | N/A | 147 | BNL1030 | View |
7 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 155 | BNL1030 | View |
8 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch09_At.09 | N/A | 60.9 | BNL1030 | View |
9 | Yumian-1 x T586, F2:3 (2005) | AD_ch05_At.05 | N/A | 50.5 | BNL1030 | View |
10 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch23_Dt.09 | N/A | 99.54 | BNL1030 | View |
11 | Palmeri x K-101, F2 (2007) | AD_ch09_At.09 | N/A | 101.5 | BNL1030 | View |
12 | Yumian-1 x T586, RIL (2006) | AD_ch09_At.09 | N/A | 12.4 | BNL1030 | View |
13 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch05_At.05 | N/A | 50.5 | BNL1030 | View |
14 | 7235 x TM-1, F2:3 (2005) | AD_ch23_Dt.09 | N/A | 27.4 | BNL1030 | View |
15 | Yumian-1 x T586, RIL (2015) | AD_ch09_At.09 | N/A | 70.1 | BNL1030 | View |
16 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch09_At.09 | N/A | 125 | BNL1030 | View |
17 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch09_At.09 | N/A | 79.7 | BNL1030 | View |
18 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch09_At.09 | N/A | 215.5 | BNL1030b | View |
19 | TM-1 x 3-79, RIL (2012) | AD_ch23_Dt.09 | N/A | 55.03 | BNL1030b | View |
20 | TM-1 x 3-79, RIL (2014) | AD_ch23_Dt.09 | N/A | 91.2 | BNL1030b | View |
21 | Monsanto SSR Bin Map, (2009) | AD_ch23_Dt.09 | N/A | 41 | BNL1030b | View |
22 | TM-1 x 3-79, RIL (2012) | AD_ch09_At.09 | N/A | 52.35 | BNL1030a | View |
23 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch23_Dt.09 | N/A | 174.4 | BNL1030a | View |
24 | TM-1 x 3-79, RIL (2014) | AD_ch09_At.09 | N/A | 90.1 | BNL1030a | View |
25 | Monsanto SSR Bin Map, (2009) | AD_ch09_At.09 | N/A | 41 | BNL1030a | View |
26 | TM-1 x Hai-7124, BC1 (2007) | AD_ch09_At.09 | N/A | 96.5 | BNL1030-225 | View |
27 | TM-1 x Hai-7124, BC1 (2008) | AD_ch09_At.09 | N/A | 97.05 | BNL1030-225 | View |
28 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch09_At.09 | N/A | 92.4 | BNL1030-225 | View |
29 | TM-1 x Hai-7124, BC1 (2012) | AD_ch09_At.09 | N/A | 95.8 | BNL1030-225 | View |
30 | Yumian-1 x T586, RIL (2009) | AD_ch09_At.09 | N/A | 12.4 | BNL1030/450y(C9) | View |
31 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch09_At.09 | N/A | 100.93 | BNL1030 | View |
32 | TM-1 x 3-79, RIL (2012.v3) | AD_ch09_At.09 | N/A | 90.1 | BNL1030a | View |
33 | TM-1 x 3-79, RIL (2012.v3) | AD_ch23_Dt.09 | N/A | 91.18 | BNL1030b | View |
34 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch09_At.09 | N/A | 150.1 | BNL1030a | View |
35 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch23_Dt.09 | N/A | 194.6 | BNL1030b | View |
Sequence
>BNL1030 ID=BNL1030; Name=BNL1030; organism=Gossypium hirsutum; type=genetic_marker; length=237bp TTTGGAGCCATTTACATGCATAGACAATGGTAATAACAACAATAAGAGGA AAAGAAGACCCGCAGGAACACCTGGTACGTATTATATATATATATGAAAG CTTTTTACCCAATTATTCAAAATGGATATATGTGTGTGTGTGTGTGTGTG TGTGTGTTTGTGTTCATGATTGGCTTTCTTTTTGTCTAATTGGAAAATAT AATTGGGTGATGTTAGATCCAGATGCAGAAGTGGTTT
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