Ghi_A08G15276

Transcript Overview
NameGhi_A08G15276
Unique NameGhi_A08G15276_WHU-TM1_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length1326
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:125700826..125702603 -Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v12020-04-04
InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins2020-04-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
bztwL0775Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bztwL1438Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL2015Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL1946Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bztwL2727Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3296Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3145Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3699Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3570Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hwtwL0830Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1403Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1824Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dttwL0088Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gautwL0790Gossypium australe (G2) genome CRI_v1.1Gossypium australe
fntwL0796Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gautwL1396Gossypium australe (G2) genome CRI_v1.1Gossypium australe
dttwL0899Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gautwL1525Gossypium australe (G2) genome CRI_v1.1Gossypium australe
fntwL1343Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fntwL1781Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dttwL1628Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gbtwL2034Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL5890Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL3750Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
abtwL2862Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abtwL3246Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
awtwL0790Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awtwL1366Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awtwL1617Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awtwL1781Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL1422Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gktwL0426Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghttwL1913Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gktwL0848Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gtbtwL0787Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gktwL1334Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gtbtwL1344Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL1438Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghttwL3093Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
grbtwL1298Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghtwL1994Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghttwL3515Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghztwL1921Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
grbtwL1703Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
hgstwL1501Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgstwL2023Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghztwL3149Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghtwL3688Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL3550Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
actwL1000Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbtwL2006Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hgstwL3291Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL1698Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hgstwL3703Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL2002Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbtwL3808Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
actwL2171Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hjtwL1409Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbtwL4213Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hjtwL1908Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL3146Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rbtwL1255Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hjtwL3575Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rjtwL1096Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rbtwL2845Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rjtwL2053Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hntwL0768Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adtwL1530Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL1463Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adtwL2035Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL1978Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL2067Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL3761Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL3439Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL3371Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntwL3873Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL3792Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztwL0771Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1433Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1919Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3126Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3384Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3562Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
twuhR2781Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2842Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2851Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtttwL0402Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtttwL1079Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtttwL1469Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtotwL0400Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtotwL1033Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtotwL1379Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dfitwL0091Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfitwL0539Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfitwL1033Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfitwL1225Gossypium aridum (D4) genome ISU_v1Gossypium aridum
gtitwL0651Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gtitwL1081Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dritwL0504Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dritwL0832Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dritwL1543Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dqitwL0509Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL0677Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL1198Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL1399Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ndmtwL0794Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL1476Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL1997Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3236Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3500Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3680Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwL0738Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL1364Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL1845Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2978Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL3397Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtwL0733Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1345Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1826Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2976Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL3385Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
jmbtwL0787Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL1451Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL1954Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3152Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3413Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3590Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
psctwL0743Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1358Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1834Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2965Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL3382Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytwL0759Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1406Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1892Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL3080Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL3506Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftwL0789Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL1436Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL1924Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3125Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3542Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Gar05G04980Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
GB_A05G0495Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Ghe05G05310Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Kirkii_Juiced.00g226160.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
GB_A08G2951Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:JABEZX|Golob_00031840-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Gothu.00012577-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
rna-gnl|WGS_VKGE|Gotom.A08G296000.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS:JABEZZ|Gorai_00013339-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
EVM_prediction_Ga13G2320Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
rna-gnl|WGS_VKGE|Gotom.A05G052400.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Golon.013G237900-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
GB_A13G2283Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Kirkii_Juiced.00g383510.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
EVM0008036.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gene-EPI10_014140-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
rna-gnl|WGS:JABEZX|Golob_00000602-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
EVM_prediction_Ga05G0515Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
GB_D05G0498Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Gar13G25250Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Gbar_A08G027230.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
rna-gnl|WGS:JABEZX|Golob_00011832-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Ghe08G32100Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS:JABFAD|Gohar_00033409-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
rna-gnl|WGS:JABFAA|Goari_00000599-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
mikado.F05G1180.1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Cotton_D_gene_10001824Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
gene-EPI10_033522-mRNA2Gossypium australe (G2) genome CRI_v1.1Gossypium australe
Cotton_A_20490Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
Kirkii_Juiced.00g086580.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS:JABFAD|Gohar_00000576-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
Golon.008G290600-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Gbar_D08G027940.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
rna-gnl|WGS:JABEZZ|Gorai_00000555-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
rna-gnl|WGS:JABEZZ|Gorai_00027641-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
GB_D13G2230Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS_VKGI|Godar.A05G050700.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS_VKGI|Godar.D08G313000.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Cotton_A_11907Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
rna-gnl|WGS:JABFAE|Goarm_00027321-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
rna-gnl|WGS:VKDL|Gobar.A05G049600.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
EVM0003670.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
D5.v1.pred_00011977-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Ghe13G25570Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
EVM_prediction_Ga08G2938Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
GB_D08G2943Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
TURN.03g396850.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Cotton_D_gene_10037176Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rna-gnl|WGS:JABFAE|Goarm_00013069-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
Gar08G31880Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rna-gnl|WGS_VKGI|Godar.A08G296700.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GH_D05G0498Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
maker-At_13-aug-g-5.411-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
mk-At_05-snapG-11.1410-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Gh_A08G286800.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GH_D08G02898_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GH_A13G2148Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
maker-At_13_GB713-augustus-gene-107.476-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gohir.D08G271900.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Ghicr24_A08G278300.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gohir.D05G050100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GhirPA0501T377600.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
maker-At_05-snap-gene-11.1410-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Gh_D05G0501Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
maker-At_05_GB713-augustus-gene-4.518-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gohir.A05G047600.3Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Ghir_A08G026360.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
A05G05970.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gohir.A08G250400.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GH_D05G00442_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GhirPA0801T267600.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Gh_D08G2610Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
D08G30750.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GhM_A08G3199.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
A08G31300.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gohir.A05G047600.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gh_A05G037900.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghicr24_D08G278800.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
CotAD_06842Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Gh_D08G277300.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
maker-Dt_08_GB713-augustus-gene-70.186-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
GhirPA1301T198700.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Gohir.D08G271900.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
A13G23490.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GhM_D08G3132.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_A05G0379Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.A08G250400.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
CotAD_00205Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
GH_A05G00402_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GH_A13G02178_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GH_D08G2832Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
maker-At_08_GB713-augustus-gene-125.482-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
GhM_A05G0524.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
D05G05190.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GhM_D05G0553.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
maker-At_08-aug-g-4.1246-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
mk-Dt_08-augustus-gene-70.1042-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GH_A05G0493Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
mk-At_13-augustus-gene-5.411-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GH_A08G2840Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GhM_A13G2469.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_A08G2244Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
mk-At_08-augustus-gene-4.1246-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GhirPD0801T004400.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
GH_A08G02866_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
maker-Dt_08-aug-g-70.1042-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Gh_A13G1638Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghi_A08G15276.geneGhi_A08G15276.gene_WHU-TM1_v1Gossypium hirsutumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A08G15276.CDS1Ghi_A08G15276.CDS1_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A08G15276.CDS2Ghi_A08G15276.CDS2_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A08G15276.CDS3Ghi_A08G15276.CDS3_WHU-TM1_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A08G15276Ghi_A08G15276_WHU-TM1_v1-proteinGossypium hirsutumpolypeptide
Ghi_A08G15276_WHU-TM1_v1Ghi_A08G15276_WHU-TM1_v1Gossypium hirsutumpolypeptide


InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 188..436
e-value: 5.2E-80
score: 270.3
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 190..432
IPR005027Glycosyl transferase, family 43PFAMPF03360Glyco_transf_43coord: 210..418
e-value: 3.3E-68
score: 229.6
IPR005027Glycosyl transferase, family 43PANTHERPTHR10896GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASEcoord: 1..437
IPR005027Glycosyl transferase, family 43CDDcd00218GlcAT-Icoord: 189..414
e-value: 1.81149E-99
score: 294.589
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR10896:SF56coord: 1..437

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghi_A08G15276_WHU-TM1_v1 ID=Ghi_A08G15276_WHU-TM1_v1; Name=Ghi_A08G15276; organism=Gossypium hirsutum; type=mRNA; length=1326bp
ATGGCATCAATTAGAAGAACACTGTCTCCGGTGCCTCGACCGGGGACTCC
GGTTACAGGGGAGGCTGAACGTTCAGTTCCTTCTCCTCTGTTGAAGTCGA
CAATGCCGCAGACTGGTGGCTTGTTATCTTCTCTTATAGGTTTATCAGAT
TCTCAAGCATTGGTGTTCGGTGTTTTTTCGCCGAGAACTACTAGGCCTGT
TGATAGGCCGAATCTGAAACACAAAGGACAAGTATGGAGGAGGGCTCTTT
TTCATTTCTTCATTTGTTTCCTACTCGGTTTTGTTATCGGATTGACATCA
TTCGTTTCCGTAGGCTTTTCTTATATGAACCTCATTTCAGAGCAACAAGC
ATTTGCTTTCGAGGTAGAACCGACTTTTGCAAGTTTCCATATGCATGATG
GTTCAGAAAGGAATGTGACATCAATGGCGGATGACACTGAGGTTGAAAAC
AATGTCACATTGAATCCACATGCATTGGTGCAAAGACAGGGAATGATTGA
AGGGAATTTAGATAATGCCCTGACTAATCAATCACTTCCTCAAGATATAA
ATCTGGGATCCCGGAAGCTTTTGATTGTTATAACTCCAACACATGCTCGA
CCGCATCAAGCCTATTATCTAAACCGCTTGGCATACACATTAAAGCTAGT
TCAACCTCCATTATTGTGGATAGTTGTGGAGATGACCTCACAGTCCGAGG
AAACAGCCGATATCCTAAGAAAGAGTGGCATTATGTATAGGCATCTTGTT
TGCAAAAAGAATCTGACCGATATAAAAGACAGAAATGTTCATCAAAGAAA
TGTGGCATTATCTCACATTGAAACTCATCGACTTGATGGAATTGTCTACT
TTGCCGATGAGTATAATGTCTATTCAATCGATCTCTTCGAGAAAATGAGG
CATATTAGGCAGTTCGGGACATGGACTGTGGCCAAACAAACACAGGACAA
CGATAGAGTTACACTGGAAGGCCCTGTTTGTAATGGAACTAAAGTCATTG
GATGGCACCTAAATGAACTAAGCAAGAGATACAGAAGATTCCATGCTGAA
ATGCCGGGGTTTGCCTTCAATAGTACCATACTCTGGGATCCAAGACGATG
GCATCGACCCACTCTTGAACAGATTAGACAACTCGAGACAGTCAAAGATG
GCTTCCAAGCAAGCTCAATTATTGAACAAGTCGTGGAAGATGAAAGCCAG
ATGGAAGGCTTAACGCAGAACTGCTCGAGAATCATGGTTTGGGAGGTTAA
TATCGAATCTAATTCCTTCTATCCCCAAAAATGGTTGATGAAGAATAACT
TAGATGTTATTGCTCCGCTTGCATGA
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protein sequence of Ghi_A08G15276_WHU-TM1_v1

>Ghi_A08G15276_WHU-TM1_v1 ID=Ghi_A08G15276_WHU-TM1_v1; Name=Ghi_A08G15276_WHU-TM1_v1; organism=Gossypium hirsutum; type=polypeptide; length=442bp
MASIRRTLSPVPRPGTPVTGEAERSVPSPLLKSTMPQTGGLLSSLIGLSD
SQALVFGVFSPRTTRPVDRPNLKHKGQVWRRALFHFFICFLLGFVIGLTS
FVSVGFSYMNLISEQQAFAFEVEPTFASFHMHDGSERNVTSMADDTEVEN
NVTLNPHALVQRQGMIEGNLDNALTNQSLPQDINLGSRKLLIVITPTHAR
PHQAYYLNRLAYTLKLVQPPLLWIVVEMTSQSEETADILRKSGIMYRHLV
CKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFEKMR
HIRQFGTWTVAKQTQDNDRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAE
MPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIEQVVEDESQ
MEGLTQNCSRIMVWEVNIESNSFYPQKWLMKNNLDVIAPLA*
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mRNA from alignment at A08:125700826..125702603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghi_A08G15276_WHU-TM1_v1 ID=Ghi_A08G15276_WHU-TM1_v1; Name=Ghi_A08G15276; organism=Gossypium hirsutum; type=mRNA; length=1778bp; location=Sequence derived from: A08:125700826..125702603- (Gossypium hirsutum
ATGGCATCAATTAGAAGAACACTGTCTCCGGTGCCTCGACCGGGGACTCC
GGTTACAGGGGAGGCTGAACGTTCAGTTCCTTCTCCTCTGTTGAAGTCGA
CAATGCCGCAGACTGGTGGCTTGTTATCTTCTCTTATAGGTTTATCAGAT
TCTCAAGCATTGGTGTTCGGTGTTTTTTCGCCGAGAACTACTAGGCCTGT
TGATAGGCCGAATCTGAAACACAAAGGACAAGTATGGAGGAGGGCTCTTT
TTCATTTCTTCATTTGTTTCCTACTCGGTTTTGTTATCGGATTGACATCA
TTCGTTTCCGTAGGCTTTTCTTATATGAACCTCATTTCAGAGCAACAAGC
ATTTGCTTTCGAGGTAGAACCGACTTTTGCAAGTTTCCATATGCATGATG
GTTCAGAAAGGAATGTGACATCAATGGCGGATGACACTGAGGTTGAAAAC
AATGTCACATTGAATCCACATGCATTGGTGCAAAGACAGGGAATGATTGA
AGGGAATTTAGATAATGCCCTGACTAATCAATCACTTCCTCAAGATATAA
ATCTGGGATCCCGGAAGCTTTTGATTGTTATAACTCCAACACATGCTCGA
CCGCATCAAGCCTATTATCTAAACCGCTTGGCATACACATTAAAGCTAGT
TCAACCTCCATTATTGTGGATAGTTGTGGAGATGACCTCACAGTCCGAGG
AAACAGCCGATATCCTAAGAAAGAGTGGCATTATGTATAGGCATCTTGTT
TGCAAAAAGAATCTGACCGATATAAAAGACAGAAATGTTCATCAAAGAAA
TGTGGCATTATCTCACATTGAAACTCATCGACTTGATGGAATTGTCTACT
TTGCCGATGAGTATAATGTCTATTCAATCGATCTCTTCGAGAAAATGAGG
CATATTAGGTAAATACTTATATCTCTTGCTTGATATTGTAATGCAAATCT
GGTGACGTCATTTTAGATCATGGCTTGTTTTGGATCATGGCTTGTTTTGT
TCTTCCTTTTCAAGCGTTCGGTGAAAGTGTGAGAATCATTACTTGTCTCT
TGATTATTCCATGTGATCATGTCTCGACTCGAGATAGGCTTCCTTAAGAC
GATCTCATATACATACATGTTAGCAAAAAAGTTGACTGCTAAATGCCTCC
ACTTTGGCTTTTGTCTGCACTTTGCTTATTTATTTTTGGTTTCATTGCTG
TGATCTCCTTCTCCCTTTTACTTGTGCCTATTACAGCAGTTTATTTTTCT
ATGGCCTTTGTTATAGGCAGTTCGGGACATGGACTGTGGCCAAACAAACA
CAGGACAACGATAGAGTTACACTGGAAGGCCCTGTTTGTAATGGAACTAA
AGTCATTGGATGGCACCTAAATGAACTAAGCAAGAGATACAGAAGATTCC
ATGCTGAAATGCCGGGGTTTGCCTTCAATAGTACCATACTCTGGGATCCA
AGACGATGGCATCGACCCACTCTTGAACAGATTAGACAACTCGAGACAGT
CAAAGATGGCTTCCAAGTTAGTCAATTAACCCCTTGGAAGAGTCTCTTGC
AACATAACTTCTGTTGAAATGCTTGATACTAACGTTTAACTCATTGATTT
GAATTTGCAGGCAAGCTCAATTATTGAACAAGTCGTGGAAGATGAAAGCC
AGATGGAAGGCTTAACGCAGAACTGCTCGAGAATCATGGTTTGGGAGGTT
AATATCGAATCTAATTCCTTCTATCCCCAAAAATGGTTGATGAAGAATAA
CTTAGATGTTATTGCTCCGCTTGCATGA
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Coding sequence (CDS) from alignment at A08:125700826..125702603-

>Ghi_A08G15276_WHU-TM1_v1 ID=Ghi_A08G15276_WHU-TM1_v1; Name=Ghi_A08G15276; organism=Gossypium hirsutum; type=CDS; length=1326bp; location=Sequence derived from: A08:125700826..125702603- (Gossypium hirsutum
ATGGCATCAATTAGAAGAACACTGTCTCCGGTGCCTCGACCGGGGACTCC
GGTTACAGGGGAGGCTGAACGTTCAGTTCCTTCTCCTCTGTTGAAGTCGA
CAATGCCGCAGACTGGTGGCTTGTTATCTTCTCTTATAGGTTTATCAGAT
TCTCAAGCATTGGTGTTCGGTGTTTTTTCGCCGAGAACTACTAGGCCTGT
TGATAGGCCGAATCTGAAACACAAAGGACAAGTATGGAGGAGGGCTCTTT
TTCATTTCTTCATTTGTTTCCTACTCGGTTTTGTTATCGGATTGACATCA
TTCGTTTCCGTAGGCTTTTCTTATATGAACCTCATTTCAGAGCAACAAGC
ATTTGCTTTCGAGGTAGAACCGACTTTTGCAAGTTTCCATATGCATGATG
GTTCAGAAAGGAATGTGACATCAATGGCGGATGACACTGAGGTTGAAAAC
AATGTCACATTGAATCCACATGCATTGGTGCAAAGACAGGGAATGATTGA
AGGGAATTTAGATAATGCCCTGACTAATCAATCACTTCCTCAAGATATAA
ATCTGGGATCCCGGAAGCTTTTGATTGTTATAACTCCAACACATGCTCGA
CCGCATCAAGCCTATTATCTAAACCGCTTGGCATACACATTAAAGCTAGT
TCAACCTCCATTATTGTGGATAGTTGTGGAGATGACCTCACAGTCCGAGG
AAACAGCCGATATCCTAAGAAAGAGTGGCATTATGTATAGGCATCTTGTT
TGCAAAAAGAATCTGACCGATATAAAAGACAGAAATGTTCATCAAAGAAA
TGTGGCATTATCTCACATTGAAACTCATCGACTTGATGGAATTGTCTACT
TTGCCGATGAGTATAATGTCTATTCAATCGATCTCTTCGAGAAAATGAGG
CATATTAGGCAGTTCGGGACATGGACTGTGGCCAAACAAACACAGGACAA
CGATAGAGTTACACTGGAAGGCCCTGTTTGTAATGGAACTAAAGTCATTG
GATGGCACCTAAATGAACTAAGCAAGAGATACAGAAGATTCCATGCTGAA
ATGCCGGGGTTTGCCTTCAATAGTACCATACTCTGGGATCCAAGACGATG
GCATCGACCCACTCTTGAACAGATTAGACAACTCGAGACAGTCAAAGATG
GCTTCCAAGCAAGCTCAATTATTGAACAAGTCGTGGAAGATGAAAGCCAG
ATGGAAGGCTTAACGCAGAACTGCTCGAGAATCATGGTTTGGGAGGTTAA
TATCGAATCTAATTCCTTCTATCCCCAAAAATGGTTGATGAAGAATAACT
TAGATGTTATTGCTCCGCTTGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR005027Glyco_trans_43
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0015018galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity