Ghir_D10G007400.3_HAU-AD1_v1.0, Ghir_D10G007400.3_HAU-AD1_v1.0 (mRNA) Gossypium hirsutum

Transcript Overview
NameGhir_D10G007400.3
Unique NameGhir_D10G007400.3_HAU-AD1_v1.0
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length1848
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ghir_D10chromosomeGhir_D10:7702479..7705838 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abghL0193Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abghL0720Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
ghhnR2400Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhnR2435Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhnR2455Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhnR2464Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhnR2473Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhnR2517Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhnR2532Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghghL0181Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghghL1224Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghghL1441Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghghR1498Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghghR1523Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
bhghL1916Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhghL2931Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbghL0155Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbghL1077Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbghL1731Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbghL2442Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
ghrjR1307Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
ghrjR1324Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
ghrjR1338Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
ghrjR1356Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
ghrbR2304Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
ghrbR2305Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
ghrbR2317Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
ghrbR2347Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
ghhjR2211Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghhjR2236Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghhjR2266Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghhjR2275Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghhjR2302Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghhjR2320Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghhbR3060Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
ghhbR3099Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
ghhbR3159Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
acghL0240Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acghL1233Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
ghhzR2110Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
ghhzR2141Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
ghhzR2163Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
ghhzR2174Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
ghhzR2182Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
ghhzR2201Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzghL0164Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzghL1037Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzghL1691Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzghL2372Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
ghgkR1438Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghgkR1489Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghgtbR1640Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghgtbR1653Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghgtbR1671Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghgtbR1677Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghgtbR1714Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghgrbR1560Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghgrbR1577Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghgrbR1604Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghghzR1870Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghghzR1898Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghghzR1927Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghghzR1947Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghghtR2067Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghghtR2101Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghghtR2122Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghghtR2130Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghghtR2137Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghghtR2158Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghghtR2180Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gaughL0137Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gaughL0536Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adghL0163Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adghL1080Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adghL1725Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adghL2438Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
ghhgsR1808Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghhgsR1834Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghhgsR1860Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghhgsR1866Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghhgsR1886Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghtoR1740Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
ghtoR1762Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
ghtoR1790Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
ghtoR1807Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gdghL0158Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdghL1079Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdghL1722Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdghL2457Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fnghL0169Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnghL0997Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtghL0658Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dtghL1202Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
ghhwR1723Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
ghhwR1744Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
ghhwR1777Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
ghhwR1782Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
ghhwR1808Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
awghL0169Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awghL0983Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghtwR2170Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
ghtwR2202Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
ghtwR2223Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
ghtwR2229Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
ghtwR2238Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
ghtwR2263Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
ghuhR1736Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
ghuhR1761Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
ghuhR1794Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
ghuhR1808Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
d3dghL0285Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
ghgtiR1711Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
ghgtiR1735Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
ghgtiR1778Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
ghgtiR1783Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
drighL0213Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
drighL1085Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dsighL490Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsighL623Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dqighL0453Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqighL0732Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ghndmR2161Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ghndmR2194Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ghndmR2216Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ghndmR2236Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ghndmR2257Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ghndmR2279Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adbghL0148Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbghL0939Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbghL1512Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbghL2145Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
ghjmbR2186Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
ghjmbR2218Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
ghjmbR2242Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
ghjmbR2250Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
ghjmbR2258Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
ghjmbR2281Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
ghjmbR2303Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
ghpscR2090Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
ghpscR2126Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
ghpscR2148Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
ghpscR2167Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
ghpscR2187Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adyghL0172Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyghL1013Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyghL1634Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyghL2316Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
ghhpfR2065Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
ghhpfR2099Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
ghhpfR2127Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
ghhpfR2134Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
ghhpfR2157Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
ghhpfR2182Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghir_D10G007400Ghir_D10G007400_HAU-AD1_v1.0Gossypium hirsutumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghir_D10G007400.3_HAU-AD1_v1.0Ghir_D10G007400.3_HAU-AD1_v1.0Gossypium hirsutumpolypeptide
Ghir_D10G007400.3Ghir_D10G007400.3_HAU-AD1_v1.0-proteinGossypium hirsutumpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghir_D10G007400.3.utr3p1Ghir_D10G007400.3.utr3p1_HAU-AD1_v1.0Gossypium hirsutumthree_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghir_D10G007400.3.exon6Ghir_D10G007400.3.exon6_HAU-AD1_v1.0Gossypium hirsutumexon
Ghir_D10G007400.3.exon5Ghir_D10G007400.3.exon5_HAU-AD1_v1.0Gossypium hirsutumexon
Ghir_D10G007400.3.exon4Ghir_D10G007400.3.exon4_HAU-AD1_v1.0Gossypium hirsutumexon
Ghir_D10G007400.3.exon3Ghir_D10G007400.3.exon3_HAU-AD1_v1.0Gossypium hirsutumexon
Ghir_D10G007400.3.exon2Ghir_D10G007400.3.exon2_HAU-AD1_v1.0Gossypium hirsutumexon
Ghir_D10G007400.3.exon1Ghir_D10G007400.3.exon1_HAU-AD1_v1.0Gossypium hirsutumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Ghir_D10G007400.3cds.Ghir_D10G007400.3_HAU-AD1_v1.0Gossypium hirsutumCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghir_D10G007400.3.utr5p1Ghir_D10G007400.3.utr5p1_HAU-AD1_v1.0Gossypium hirsutumfive_prime_UTR


Homology
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy Swiss-Prot
Match: CUT1C_ARATH (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.385e-51
Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCA------------VFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASI+  L  PLLL  RK+   +  KLP S T G  + +            + VKA+G+SS+SST L +V +++NVWDKS EDR+GLIGLGFA IVALW S NLI+ IDKLP+I +  E++GILFS WF YRYLLFKPDR+EL +I+ KS++ I G
Sbjct:    1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGESSDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy Swiss-Prot
Match: CUT1B_ARATH (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.154e-23
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0 
Query:   57 IVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            IV++ +  W+K D D+  +  L FA +VALW S  +IS ID+LP++P VLE++GI ++ WF Y+ L+FKPDRE LF+ +  +   I G
Sbjct:   86 IVKTAQEAWEKVD-DKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy Swiss-Prot
Match: CUT1A_ARATH (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.666e-16
Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = 0 
Query:   27 LPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSD--EDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            +P+    G     V +  T  SSE ++S+   E + ++ +K D  E++  ++  G  AIVA+W S+ ++  I+ +P++P V+E++G+ ++ WF+YRYLLFK  R+EL + I     +I G
Sbjct:   43 VPLKLVSGNGLQKVELLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAG 162
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy Swiss-Prot
Match: CUT1D_ARATH (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.948e-13
Identity = 31/79 (39.24%), Postives = 53/79 (67.09%), Query Frame = 0 
Query:   67 KSDEDRVGLIGL-GFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            K D D+   I L G  AIVAL+ ++ ++S ++ +P+ P ++E++G+ ++LWF  RYLLFK +REEL   +++   Q+ G
Sbjct:  111 KLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLG 189
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy Swiss-Prot
Match: SYE_TRIEI (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.755e-8
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = 0 
Query:   92 LISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            +I  +D +PI+  + E+IG+++ +WF+YRYLL + +R+EL   I     +IFG
Sbjct:  826 VIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIKREIFG 878
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A1U8KCG1_GOSHI (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Gossypium hirsutum OX=3635 GN=LOC107914096 PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 4.299e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG
Sbjct:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A0D2REI6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G074300 PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.626e-97
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T HLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIV+SVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVKSVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A0D2SZM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G074300 PE=4 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.550e-85
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDR 128
            MAS+T HLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIV+SVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDR
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVKSVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDR 128
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A0B0NVS7_GOSAR (Thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like protein OS=Gossypium arboreum OX=29729 GN=F383_00835 PE=4 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.133e-84
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T HLLPPLLLQDRKTLF T+PKLPVSYTGGR+NCAV VKATGDSSESSTSLSIV+SVR+VWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFS WFIYRYLLFKPDREELF+IINKSLSQIFG
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFRTYPKLPVSYTGGRQNCAVCVKATGDSSESSTSLSIVKSVRHVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSSWFIYRYLLFKPDREELFEIINKSLSQIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A0D2UJS9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G074300 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.078e-73
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSL 115
            MAS+T HLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIV+SVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSL
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVKSVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSL 115
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A061GIC3_THECC (Thylakoid membrane phosphoprotein 14 kDa OS=Theobroma cacao OX=3641 GN=TCM_028770 PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.149e-65
Identity = 112/144 (77.78%), Postives = 122/144 (84.72%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASIT  L PPL LQ  KTLF T  K PV     R+NCA  VKATG+SSESSTSLSIV+SV+NVWDKSDEDRVGLIGLGFA IVALW S NL+S +DKLP+IPNVLE+IGILFSLWFIYRYLLFKPDREELFQII KS+S+IFG
Sbjct:    1 MASITASLPPPLFLQASKTLFRTLQKPPVPCIRERQNCAFVVKATGESSESSTSLSIVKSVQNVWDKSDEDRVGLIGLGFATIVALWASANLVSAVDKLPLIPNVLEVIGILFSLWFIYRYLLFKPDREELFQIIIKSISEIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A1R3H8Q4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_30438 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.029e-64
Identity = 105/144 (72.92%), Postives = 125/144 (86.81%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T  L PP+LL+ RKTLF T  KLPVS   GRRN AV VKA+ +SSESSTSLSIV+SV+NVWD SDED++ +IGLGF+AIV LW S N+++ +DKLPIIPNVLEIIGILFS+WF+YRYLLFKPDREEL+QIINKS+S+IFG
Sbjct:    1 MASLTASLPPPILLRGRKTLFRTLQKLPVSSARGRRNSAVIVKASSESSESSTSLSIVKSVQNVWDNSDEDKIAVIGLGFSAIVVLWASANVVAAVDKLPIIPNVLEIIGILFSMWFVYRYLLFKPDREELYQIINKSISEIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A1R3G7K2_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28090 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.359e-64
Identity = 106/144 (73.61%), Postives = 125/144 (86.81%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T  L PP+LLQ RKTLF T  KLP+S T GRRN AV VKA+ +SSESSTSLSIV+SV+NVWDKSDED+V +IGLGF+AIV LW S N+++ +DKLPIIPNVLEIIGIL S WF+YRYLLFKPDREEL++IINKS+S+IFG
Sbjct:    1 MASLTASLPPPILLQGRKTLFRTLQKLPLSSTRGRRNSAVIVKASSESSESSTSLSIVKSVQNVWDKSDEDKVAVIGLGFSAIVVLWASANVVAAVDKLPIIPNVLEIIGILVSTWFVYRYLLFKPDREELYKIINKSISEIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: W9RGW1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026216 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.081e-61
Identity = 99/145 (68.28%), Postives = 117/145 (80.69%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRN-CAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+   L PPLL+Q RKTL  TF KLPVS    R+N  +V VKATG++SESSTSLSI +SV+N+WD S EDR+ LIGLGFAAI A+W STNL+S ID+LPIIP VLE++GILFS WF+YRYLLFKPDREELFQI NK++  I G
Sbjct:    1 MASLVASLPPPLLVQGRKTLVRTFSKLPVSPIKERQNRVSVAVKATGENSESSTSLSITKSVQNIWDNS-EDRLALIGLGFAAIAAIWASTNLVSAIDRLPIIPTVLELVGILFSSWFVYRYLLFKPDREELFQIYNKTILDILG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Match: A0A1Q3B8S6_CEPFO (DUF4308 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07974 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.723e-58
Identity = 102/145 (70.34%), Postives = 117/145 (80.69%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNC-AVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            M SI   L PPLLL  RKT F T PKLPVS    R+NC AV VKAT ++S++S+SLS+V+SV+NVWDK  EDR+ +IGLGFAA+VALW S NLIS IDKLP+IP+ LE IGILFS WFIYRYLLFKPDREELFQIINKS+S I G
Sbjct:    1 MTSIAARLPPPLLLNGRKTNFRTLPKLPVSTIKDRQNCVAVVVKATAENSQASSSLSVVKSVQNVWDKP-EDRLAIIGLGFAAVVALWASANLISAIDKLPVIPSTLEFIGILFSSWFIYRYLLFKPDREELFQIINKSISDILG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. TAIR10
Match: AT1G52220.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:19453770-19454605 REVERSE LENGTH=156)

HSP 1 Score: 163.31 bits (412), Expect = 1.729e-52
Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCA------------VFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASI+  L  PLLL  RK+   +  KLP S T G  + +            + VKA+G+SS+SST L +V +++NVWDKS EDR+GLIGLGFA IVALW S NLI+ IDKLP+I +  E++GILFS WF YRYLLFKPDR+EL +I+ KS++ I G
Sbjct:    1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGESSDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155
[Close]
BLAST of Ghir_D10G007400.3 vs. TAIR10
Match: AT1G52220.2 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19453770-19454605 REVERSE LENGTH=155)

HSP 1 Score: 157.147 bits (396), Expect = 5.682e-50
Identity = 84/156 (53.85%), Postives = 108/156 (69.23%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCA------------VFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASI+  L  PLLL  RK+   +  KLP S T G  + +            + VKA+G+SS+SST L +V +++N WDKS EDR+GLIGLGFA IVALW S NLI+ IDKLP+I +  E++GILFS WF YRYLLFKPDR+EL +I+ KS++ I G
Sbjct:    1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGESSDSSTDLDVVSTIQN-WDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 154
[Close]
BLAST of Ghir_D10G007400.3 vs. TAIR10
Match: AT1G52220.3 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 251 Blast hits to 251 proteins in 43 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:19453770-19454605 REVERSE LENGTH=127)

HSP 1 Score: 102.834 bits (255), Expect = 6.017e-29
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGR---------RN---CAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASI+  L  PLLL  RK+   +  KLP S T G          RN    ++ VKA+G+SS+SST L +V +++NV                               IDKLP+I +  E++GILFS WF YRYLLFKPDR+EL +I+ KS++ I G
Sbjct:    1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGESSDSSTDLDVVSTIQNV------------------------------AIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 126
[Close]
BLAST of Ghir_D10G007400.3 vs. TAIR10
Match: AT2G46820.2 (| Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I P subunit | chr2:19243729-19244870 FORWARD LENGTH=174)

HSP 1 Score: 93.5893 bits (231), Expect = 8.362e-25
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0 
Query:   57 IVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            IV++ +  W+K D D+  +  L FA +VALW S  +IS ID+LP++P VLE++GI ++ WF Y+ L+FKPDRE LF+ +  +   I G
Sbjct:   86 IVKTAQEAWEKVD-DKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172
[Close]
BLAST of Ghir_D10G007400.3 vs. TAIR10
Match: AT2G46820.1 (| Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I P subunit | chr2:19243729-19244870 FORWARD LENGTH=174)

HSP 1 Score: 93.5893 bits (231), Expect = 8.362e-25
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0 
Query:   57 IVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            IV++ +  W+K D D+  +  L FA +VALW S  +IS ID+LP++P VLE++GI ++ WF Y+ L+FKPDRE LF+ +  +   I G
Sbjct:   86 IVKTAQEAWEKVD-DKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172
[Close]
BLAST of Ghir_D10G007400.3 vs. TAIR10
Match: AT4G01150.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164)

HSP 1 Score: 73.1738 bits (178), Expect = 4.830e-17
Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = 0 
Query:   27 LPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSD--EDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            +P+    G     V +  T  SSE ++S+   E + ++ +K D  E++  ++  G  AIVA+W S+ ++  I+ +P++P V+E++G+ ++ WF+YRYLLFK  R+EL + I     +I G
Sbjct:   43 VPLKLVSGNGLQKVELLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAG 162
[Close]
BLAST of Ghir_D10G007400.3 vs. TAIR10
Match: AT4G38100.1 (| Symbols: | unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17887033-17888177 REVERSE LENGTH=193)

HSP 1 Score: 65.855 bits (159), Expect = 5.035e-14
Identity = 31/79 (39.24%), Postives = 53/79 (67.09%), Query Frame = 0 
Query:   67 KSDEDRVGLIGL-GFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            K D D+   I L G  AIVAL+ ++ ++S ++ +P+ P ++E++G+ ++LWF  RYLLFK +REEL   +++   Q+ G
Sbjct:  111 KLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLG 189
[Close]
BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|1029076200|ref|XP_016698333.1| (PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic [Gossypium hirsutum] >gi|1029076202|ref|XP_016698334.1| PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic [Gossypium hirsutum])

HSP 1 Score: 289.656 bits (740), Expect = 6.095e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG
Sbjct:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|823248629|ref|XP_012456973.1| (PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic [Gossypium raimondii] >gi|823248631|ref|XP_012456974.1| PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic [Gossypium raimondii] >gi|763801992|gb|KJB68930.1| hypothetical protein B456_011G074300 [Gossypium raimondii] >gi|763801993|gb|KJB68931.1| hypothetical protein B456_011G074300 [Gossypium raimondii] >gi|763801994|gb|KJB68932.1| hypothetical protein B456_011G074300 [Gossypium raimondii])

HSP 1 Score: 285.419 bits (729), Expect = 2.305e-97
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T HLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIV+SVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVKSVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|763801995|gb|KJB68933.1| (hypothetical protein B456_011G074300 [Gossypium raimondii])

HSP 1 Score: 254.218 bits (648), Expect = 3.615e-85
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDR 128
            MAS+T HLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIV+SVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDR
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVKSVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDR 128
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BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|1050632844|ref|XP_017639370.1| (PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic isoform X2 [Gossypium arboreum] >gi|1050632846|ref|XP_017639371.1| PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic isoform X2 [Gossypium arboreum] >gi|728837289|gb|KHG16732.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 253.062 bits (645), Expect = 1.606e-84
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T HLLPPLLLQDRKTLF T+PKLPVSYTGGR+NCAV VKATGDSSESSTSLSIV+SVR+VWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFS WFIYRYLLFKPDREELF+IINKSLSQIFG
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFRTYPKLPVSYTGGRQNCAVCVKATGDSSESSTSLSIVKSVRHVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSSWFIYRYLLFKPDREELFEIINKSLSQIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|1050632842|ref|XP_017639369.1| (PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic isoform X1 [Gossypium arboreum])

HSP 1 Score: 252.677 bits (644), Expect = 5.221e-84
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T HLLPPLLLQDRKTLF T+PKLPVSYTGGR+NCAV VKATGDSSESSTSLSIV+SVR+VWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFS WFIYRYLLFKPDREELF+IINKSLSQIFG
Sbjct:   20 MASLTAHLLPPLLLQDRKTLFRTYPKLPVSYTGGRQNCAVCVKATGDSSESSTSLSIVKSVRHVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSSWFIYRYLLFKPDREELFEIINKSLSQIFG 163
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BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|1344107951|gb|PPD81737.1| (hypothetical protein GOBAR_DD21322 [Gossypium barbadense])

HSP 1 Score: 244.973 bits (624), Expect = 1.035e-80
Identity = 142/184 (77.17%), Postives = 144/184 (78.26%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGG--------------------------------RRNCAVFVKATGDSSESSTSLSIVESVRNV--------WDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+TVHLLPPLLLQDRKTLFGTFPKLPVSYTGG                                RRNCAVFVKATGDSSESSTSLSIV+SVRNV        WDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG
Sbjct:    1 MASLTVHLLPPLLLQDRKTLFGTFPKLPVSYTGGMPACGMGFNYVNPLAVPVNLFGLKTENVWQLGRRNCAVFVKATGDSSESSTSLSIVKSVRNVVALICLEQWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 184
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BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|1347716305|gb|PPS12881.1| (hypothetical protein GOBAR_AA07760 [Gossypium barbadense])

HSP 1 Score: 235.343 bits (599), Expect = 4.664e-77
Identity = 134/179 (74.86%), Postives = 140/179 (78.21%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGG-----------------------------------RRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MAS+T HLLPPLLLQDRKTLF T+PKLPVSYTGG                                   R+NCAV VKATGDSSESSTSLSIV+SVR+VWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFS WFIYRYLLFKPDREELF+IINKSLSQIFG
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFRTYPKLPVSYTGGVACQPAEWDSTMLILWQFQCRNLFGLKTENVWQLGRQNCAVCVKATGDSSESSTSLSIVKSVRHVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSSWFIYRYLLFKPDREELFEIINKSLSQIFG 179
[Close]
BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|763801991|gb|KJB68929.1| (hypothetical protein B456_011G074300 [Gossypium raimondii])

HSP 1 Score: 224.557 bits (571), Expect = 1.528e-73
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSL 115
            MAS+T HLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIV+SVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSL
Sbjct:    1 MASLTAHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVKSVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSL 115
[Close]
BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|1269948842|ref|XP_022724141.1| (protein CURVATURE THYLAKOID 1C, chloroplastic [Durio zibethinus] >gi|1269948844|ref|XP_022724143.1| protein CURVATURE THYLAKOID 1C, chloroplastic [Durio zibethinus])

HSP 1 Score: 214.927 bits (546), Expect = 2.480e-69
Identity = 117/144 (81.25%), Postives = 128/144 (88.89%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG 144
            MASIT  L PPL LQ RKT F T  KLPVS TG R+NCAV VKAT DSSESSTSLSIV+SV+N+WDKSDEDRVGLIGLGFAAIVALWTSTNLIS IDKLP+IPN+LE+IGILFS WFIYRYLLF+PDR+ELFQII KS+S+IFG
Sbjct:    1 MASITTSLPPPLFLQGRKTPFRTLQKLPVSSTGERQNCAVIVKATSDSSESSTSLSIVKSVQNIWDKSDEDRVGLIGLGFAAIVALWTSTNLISAIDKLPLIPNMLEVIGILFSSWFIYRYLLFEPDRKELFQIIKKSISEIFG 144
[Close]
BLAST of Ghir_D10G007400.3 vs. NCBI nr
Match: gi|1204930764|ref|XP_021298617.1| (protein CURVATURE THYLAKOID 1C, chloroplastic isoform X2 [Herrania umbratica])

HSP 1 Score: 212.231 bits (539), Expect = 2.796e-68
Identity = 115/143 (80.42%), Postives = 124/143 (86.71%), Query Frame = 0 
Query:    1 MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSESSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLPIIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIF 143
            MASIT  L PPL LQ RKTLF T  K PVS   GR+NCA  VKATG+SSESSTSLSIV+SV+NVWDKSDEDRVGLIGLGFAAIVALW S NL+S +DKLP+IPNVLE+IGILFSLWFIYRYLLFKPDREELFQII KSLS+I 
Sbjct:    1 MASITASLPPPLFLQARKTLFRTLRKPPVSSIRGRQNCAFVVKATGESSESSTSLSIVKSVQNVWDKSDEDRVGLIGLGFAAIVALWASANLVSAVDKLPLIPNVLEVIGILFSLWFIYRYLLFKPDREELFQIIKKSLSEIL 143
The following BLAST results are available for this feature:
BLAST of Ghir_D10G007400.3 vs. ExPASy Swiss-Prot
Analysis Date: 2018-12-03 (BLASTP of HAU v1.0 Gossypium hirsutum proteins vs UniProt Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
CUT1C_ARATH2.385e-5154.49Protein CURVATURE THYLAKOID 1C, chloroplastic OS=A... [more]
CUT1B_ARATH1.154e-2345.45Protein CURVATURE THYLAKOID 1B, chloroplastic OS=A... [more]
CUT1A_ARATH6.666e-1633.33Protein CURVATURE THYLAKOID 1A, chloroplastic OS=A... [more]
CUT1D_ARATH6.948e-1339.24Protein CURVATURE THYLAKOID 1D, chloroplastic OS=A... [more]
SYE_TRIEI4.755e-839.62Glutamate--tRNA ligase OS=Trichodesmium erythraeum... [more]
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BLAST of Ghir_D10G007400.3 vs. ExPASy TrEMBL
Analysis Date: 2018-12-03 (BLASTP of HAU v1.0 Gossypium hirsutum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8KCG1_GOSHI4.299e-99100.00protein CURVATURE THYLAKOID 1C, chloroplastic OS=G... [more]
A0A0D2REI6_GOSRA1.626e-9797.92Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0D2SZM0_GOSRA2.550e-8597.66Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0B0NVS7_GOSAR1.133e-8493.06Thylakoid membrane phosphoprotein 14 kDa, chloropl... [more]
A0A0D2UJS9_GOSRA1.078e-7397.39Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A061GIC3_THECC1.149e-6577.78Thylakoid membrane phosphoprotein 14 kDa OS=Theobr... [more]
A0A1R3H8Q4_9ROSI2.029e-6472.92Uncharacterized protein OS=Corchorus olitorius OX=... [more]
A0A1R3G7K2_COCAP3.359e-6473.61Uncharacterized protein OS=Corchorus capsularis OX... [more]
W9RGW1_9ROSA1.081e-6168.28Uncharacterized protein OS=Morus notabilis OX=9810... [more]
A0A1Q3B8S6_CEPFO2.723e-5870.34DUF4308 domain-containing protein OS=Cephalotus fo... [more]
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BLAST of Ghir_D10G007400.3 vs. TAIR10
Analysis Date: 2018-12-03 (BLASTP of HAU v1.0 Gossypium hirsutum proteins vs arabidopsis TAIR10)
Total hits: 7
Match NameE-valueIdentityDescription
AT1G52220.11.729e-5254.49| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT1G52220.25.682e-5053.85| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT1G52220.36.017e-2940.38| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT2G46820.28.362e-2545.45| Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem... [more]
AT2G46820.18.362e-2545.45| Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem... [more]
AT4G01150.14.830e-1733.33| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT4G38100.15.035e-1439.24| Symbols: | unknown protein; LOCATED IN: chlorop... [more]
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BLAST of Ghir_D10G007400.3 vs. NCBI nr
Analysis Date: 2018-11-20 (BLASTP of HAU v1.0 Gossypium hirsutum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1029076200|ref|XP_016698333.1|6.095e-99100.00PREDICTED: protein CURVATURE THYLAKOID 1C, chlorop... [more]
gi|823248629|ref|XP_012456973.1|2.305e-9797.92PREDICTED: protein CURVATURE THYLAKOID 1C, chlorop... [more]
gi|763801995|gb|KJB68933.1|3.615e-8597.66hypothetical protein B456_011G074300 [Gossypium ra... [more]
gi|1050632844|ref|XP_017639370.1|1.606e-8493.06PREDICTED: protein CURVATURE THYLAKOID 1C, chlorop... [more]
gi|1050632842|ref|XP_017639369.1|5.221e-8493.06PREDICTED: protein CURVATURE THYLAKOID 1C, chlorop... [more]
gi|1344107951|gb|PPD81737.1|1.035e-8077.17hypothetical protein GOBAR_DD21322 [Gossypium barb... [more]
gi|1347716305|gb|PPS12881.1|4.664e-7774.86hypothetical protein GOBAR_AA07760 [Gossypium barb... [more]
gi|763801991|gb|KJB68929.1|1.528e-7397.39hypothetical protein B456_011G074300 [Gossypium ra... [more]
gi|1269948842|ref|XP_022724141.1|2.480e-6981.25protein CURVATURE THYLAKOID 1C, chloroplastic [Dur... [more]
gi|1204930764|ref|XP_021298617.1|2.796e-6880.42protein CURVATURE THYLAKOID 1C, chloroplastic isof... [more]
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InterPro
Analysis Name: InterProScan Analysis for HAU v1.0 Gossypium hirsutum proteins
Date Performed: 2018-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 60..144
e-value: 1.7E-27
score: 95.0
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 1..144
NoneNo IPR availablePANTHERPTHR33222:SF3PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTICcoord: 1..144

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghir_D10G007400.3_HAU-AD1_v1.0 ID=Ghir_D10G007400.3_HAU-AD1_v1.0; Name=Ghir_D10G007400.3; organism=Gossypium hirsutum; type=mRNA; length=1848bp
AAGGTAAATCTAAAGTCTAAAACCCTTTTGGACTCCCACGAATATAACTC
ATTTTTCGGAATTGCTTTTCTTTGCGCTTTTTAGCAGGTTTTTTCATGGC
TTCCATTACTGTACACCTGCTTCCGCCATTGCTTTTACAAGATAGAAAGA
CCCTTTTCGGGACTTTTCCAAAACTCCCAGTTTCTTATACCGGAGGGAGG
CGAAACTGTGCTGTTTTTGTGAAGGCTACCGGTGATAGCTCAGAGTCTTC
TACCTCACTTAGTATTGTCGAGTCTGTGCGAAATGTTTGGGATAAATCTG
ATGAAGATAGGGTAGGTCTCATTGGTCTGGGATTTGCAGCTATTGTGGCC
CTGTGGACTTCAACTAATTTGATTTCGGTTATTGACAAATTGCCAATTAT
CCCAAATGTGCTGGAAATTATTGGCATACTGTTTTCCTTGTGGTTTATTT
ACCGGTATCTATTGTTCAAACCAGATCGGGAAGAACTGTTCCAAATCATC
AACAAGTCATTATCACAAATATTTGGATAGTGAATTCGAATGCTAAACAA
GTAATCTAGGACCAGCCCTGCAATTCTAATGTGGTTCGTGTTGCAGTGGT
GTTGAAATATGGCATCTTCTTTTATGGTGTAATCTTTTTTTCTGTATTAC
TGTTAAGTGTGATGCTTTTTAACTTCAAACCCAACGTAATTATAAATTAC
CTGAAAGTTGAGCCAAGGGCCTACATTTTCCACTGTTCTTAGCCATAGAA
ACAACCGAAGCATATATCTATCGAAGTTATGGGGCAGGCGCACAAATGAA
AATTTTCAATCGAACCAGTCAAACTGAGTACTATAATTGAAATATGTTTT
AGATTTCTTGATTTTTTTTTCCTCAGCTTAAACTGTTATCGTCCTTGTTT
TAGTTCAGTTATATCATTTTAAATCGATTGAATGAAAGCAGTAAGATCAA
TAATTCATAGCAAAGTTATGCGCTATGCAACTTGCCAGATAATGGAGAAA
CAAAAGAAAAATGCTGATCTTCCTGTATTAGAGACAGTAGAAAAATCTGA
GACCCCAACATCACCTGCTGTGAACTGGGTAGAGAAAATCAGGTCAGTGA
AATGTAAAACAGATGTCAAATTGTAGAAATGTTTTAAGTCCCGGTTTCCT
GTTTCAACTAGTTTAGTAGTCTACAGTGTACCCTTCATTGAGGCCGGTAA
TGCCAGCACAAATAAACGTGCCAACATTTTTCTTTATCATGAGCTTTAGG
ATGATTACTGCTGCCAAAAGCTCAGCATCAAGTTGAGCTAAACTTCAGTT
CCTGTCTTCAGCATTGTCCATCTGAGTATTAGCAATCCTCCCGTCATGTT
CCGCAGAGTTCTTACTGATCATGGAAGCACTGATTTGTCCCGTAAACACG
AAGAAGATAATGAAAGGGGAATAGAAGAGCATCATCTACCTGTGAAACCA
AAAGATTTTGAAAAAACAGGATGTTAGTTTTATAAGCACAATAACAAGGA
AATATATTTGCATTCACCTTATATTTTCTAGGTTGAGACACAGATATCAT
CCTGATGGTTCCGTATGACAGGCAGGAGAGGACAGCAACTCAAAGTTCAT
ATTCTTTGTTTTGGTTGTCAGTTCAGTTCCTTTGTTCTAATGTCTTAATT
ATCTTCTAATCTATCTGCCTTAGAAGTCTTGTTATTTCCTTTCCAGTGAC
AGTTTTATTATCTATGTTTCCTTAACTCTTCCTAGACAATAATTTTACAG
AGGATATGTTATTCAATTCAGGATATAGTTACATGTTCTCACATAACATT
TTGTATCTATTAGATTGATAGATGAGATGAGGCATGGGAATCTTACTT
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protein sequence of Ghir_D10G007400.3_HAU-AD1_v1.0

>Ghir_D10G007400.3_HAU-AD1_v1.0 ID=Ghir_D10G007400.3_HAU-AD1_v1.0; Name=Ghir_D10G007400.3_HAU-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=144bp
MASITVHLLPPLLLQDRKTLFGTFPKLPVSYTGGRRNCAVFVKATGDSSE
SSTSLSIVESVRNVWDKSDEDRVGLIGLGFAAIVALWTSTNLISVIDKLP
IIPNVLEIIGILFSLWFIYRYLLFKPDREELFQIINKSLSQIFG
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mRNA from alignment at Ghir_D10:7702479..7705838-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghir_D10G007400.3_HAU-AD1_v1.0 ID=Ghir_D10G007400.3_HAU-AD1_v1.0; Name=Ghir_D10G007400.3; organism=Gossypium hirsutum; type=mRNA; length=3360bp; location=Sequence derived from: Ghir_D10:7702479..7705838- (Gossypium hirsutum
AAGGTAAATCTAAAGTCTAAAACCCTTTTGGACTCCCACGAATATAACTC
ATTTTTCGGAATTGCTTTTCTTTGCGCTTTTTAGCAGGTTTTTTCATGGC
TTCCATTACTGTACACCTGCTTCCGCCATTGCTTTTACAAGATAGAAAGA
CCCTTTTCGGGACTTTTCCAAAACTCCCAGTTTCTTATACCGGAGGTGTG
TTCTTCACTTTATTTATCCTAAAGCAACTGTTTTTTTTTAAGGTTTTACT
GTAAATTTAAATATGATGGTTCAATTTGCACTTGGATTGGATTGTTTTTG
GTTAGTTCATGGTTGAATTTGAGCCTTTATTTACATTAAGTTTCACCTTT
TTATGTTAGTTATAGATTACTATGAGATAGATGACGCTTGGAGTTACAAT
ATAAATCTTCATGGGTTAAAAATGAATATCAATCTGGGATATTATGGTTA
AAATAGTTTTTTTTTTGGGGGGGGGGAGAATTATTGTGGGAGTTGGGCTA
AAACAGTGGTAATATTGTGTGTGTGTGCGCGCGCGCGCGCGTTTGAGTGA
CAGTCTGGTAATAGGATTCCTAAGGGGATATCAATGTGGTCTTTTCTAGT
CCAAATTTATGACATGGAAATGAACAATTCTTGTGAAAAATGGCAATCAT
TGGTGTCGAGATAATCCAAGGAAGAAATTTTCAGTTAATTATCTTGGTTT
GTTGTGTCGTATGCTTATCCTTCATGTCAGGCATGCCGGCCTGCGGAATG
GGATTCAACTATGTTAATCCTTTGGCAGTTCCAGTGTAGGTACAGGACAA
TTACTTGAGAATGGTTTGGGTGTCTAAGATTTATTGCATGGGGATTATAG
AGTTAGCGCTTTTAGTTGTCTCTGATGTTCATCAGAAACTTGTTTGGATT
GAAAACTGAAAATGTTTGGCAATTAGGTTCTATCAGTTGCAATATTTCAT
GCTTTGGGTAATTTACTCTTTCCCTTTTCACTTGATATTCTTGCATTGCA
GGGAGGCGAAACTGTGCTGTTTTTGTGAAGGCTACCGGTGATAGCTCAGA
GTCTTCTACCTCACTTAGTATTGTCGAGTCTGTGCGAAATGTTGTAGGTT
TCTCTCCTAGACACACACTTGCGTATCATTGTGATGATTGCACTCCATAT
ATGCTCAAAACATATTGAGGGGCGGGGGGGACAGTTAGTACTTTGTTCAA
GAAATAGGAGAATTTCTATGCTTAAATATAATATAACTTTTATATTTCAT
TTCTCCTTCTGTATTTTCCAATTCTGTCTTCTTTTCTGATTTCCATAAAG
CAAGGAATAGTATCCATCCTCGACTCTTGCCTTAAGAAGCGGTATTCATA
AAGTATATTTTTTGTTTTTATTTTTTTCTGATTCAGCTTTAATTTGCTTG
GAACAGTGGGATAAATCTGATGAAGATAGGGTAGGTCTCATTGGTCTGGG
ATTTGCAGCTATTGTGGCCCTGTGGACTTCAACTAATTTGATTTCGGTAA
CTGATTGCTTTGGAGTTTCAAACCATATTTTTTAGTTTTGACTATTGGAG
TTATAACTCTGAGATCAAACATAAGGTCAAGTCTCTTTGATATGAACAGG
TTATTGACAAATTGCCAATTATCCCAAATGTGCTGGAAATTATTGGCATA
CTGTTTTCCTTGGTAAGTTGGCCGAGCACGAGCTTTTGAGTTTGACCAAT
GCTTAATACCTCACTGGTATATATATTTATGTTTCCCCATCTCCATGGAG
GCTTCAAGTACTAACTCATACTTTCCTTTTTCAGTGGTTTATTTACCGGT
ATCTATTGTTCAAACCAGATCGGTAAGTAGAATTCCTTGACATTAGAGAT
TTGTTGATGGTGAAACCCATAGTTGTTACTTGTGCATGCAATATGATTTT
TTTGGTATATTGATGAAGAGAGCACCACTTTGAGCTGTGAATCTTTAGCT
CAGTTGGAATAACCTAACTCCGAACCATCTGTTTTTGCAGGGAAGAACTG
TTCCAAATCATCAACAAGTCATTATCACAAATATTTGGATAGTGAATTCG
AATGCTAAACAAGTAATCTAGGACCAGCCCTGCAATTCTAATGTGGTTCG
TGTTGCAGTGGTGTTGAAATATGGCATCTTCTTTTATGGTGTAATCTTTT
TTTCTGTATTACTGTTAAGTGTGATGCTTTTTAACTTCAAACCCAACGTA
ATTATAAATTACCTGAAAGTTGAGCCAAGGGCCTACATTTTCCACTGTTC
TTAGCCATAGAAACAACCGAAGCATATATCTATCGAAGTTATGGGGCAGG
CGCACAAATGAAAATTTTCAATCGAACCAGTCAAACTGAGTACTATAATT
GAAATATGTTTTAGATTTCTTGATTTTTTTTTCCTCAGCTTAAACTGTTA
TCGTCCTTGTTTTAGTTCAGTTATATCATTTTAAATCGATTGAATGAAAG
CAGTAAGATCAATAATTCATAGCAAAGTTATGCGCTATGCAACTTGCCAG
ATAATGGAGAAACAAAAGAAAAATGCTGATCTTCCTGTATTAGAGACAGT
AGAAAAATCTGAGACCCCAACATCACCTGCTGTGAACTGGGTAGAGAAAA
TCAGGTCAGTGAAATGTAAAACAGATGTCAAATTGTAGAAATGTTTTAAG
TCCCGGTTTCCTGTTTCAACTAGTTTAGTAGTCTACAGTGTACCCTTCAT
TGAGGCCGGTAATGCCAGCACAAATAAACGTGCCAACATTTTTCTTTATC
ATGAGCTTTAGGATGATTACTGCTGCCAAAAGCTCAGCATCAAGTTGAGC
TAAACTTCAGTTCCTGTCTTCAGCATTGTCCATCTGAGTATTAGCAATCC
TCCCGTCATGTTCCGCAGAGTTCTTACTGATCATGGAAGCACTGATTTGT
CCCGTAAACACGAAGAAGATAATGAAAGGGGAATAGAAGAGCATCATCTA
CCTGTGAAACCAAAAGATTTTGAAAAAACAGGATGTTAGTTTTATAAGCA
CAATAACAAGGAAATATATTTGCATTCACCTTATATTTTCTAGGTTGAGA
CACAGATATCATCCTGATGGTTCCGTATGACAGGCAGGAGAGGACAGCAA
CTCAAAGTTCATATTCTTTGTTTTGGTTGTCAGTTCAGTTCCTTTGTTCT
AATGTCTTAATTATCTTCTAATCTATCTGCCTTAGAAGTCTTGTTATTTC
CTTTCCAGTGACAGTTTTATTATCTATGTTTCCTTAACTCTTCCTAGACA
ATAATTTTACAGAGGATATGTTATTCAATTCAGGATATAGTTACATGTTC
TCACATAACATTTTGTATCTATTAGATTGATAGATGAGATGAGGCATGGG
AATCTTACTT
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Coding sequence (CDS) from alignment at Ghir_D10:7702479..7705838-

>Ghir_D10G007400.3_HAU-AD1_v1.0 ID=Ghir_D10G007400.3_HAU-AD1_v1.0; Name=Ghir_D10G007400.3; organism=Gossypium hirsutum; type=CDS; length=435bp; location=Sequence derived from: Ghir_D10:7702479..7705838- (Gossypium hirsutum
ATGGCTTCCATTACTGTACACCTGCTTCCGCCATTGCTTTTACAAGATAG
AAAGACCCTTTTCGGGACTTTTCCAAAACTCCCAGTTTCTTATACCGGAG
GGAGGCGAAACTGTGCTGTTTTTGTGAAGGCTACCGGTGATAGCTCAGAG
TCTTCTACCTCACTTAGTATTGTCGAGTCTGTGCGAAATGTTTGGGATAA
ATCTGATGAAGATAGGGTAGGTCTCATTGGTCTGGGATTTGCAGCTATTG
TGGCCCTGTGGACTTCAACTAATTTGATTTCGGTTATTGACAAATTGCCA
ATTATCCCAAATGTGCTGGAAATTATTGGCATACTGTTTTCCTTGTGGTT
TATTTACCGGTATCTATTGTTCAAACCAGATCGGGAAGAACTGTTCCAAA
TCATCAACAAGTCATTATCACAAATATTTGGATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR025564CAAD_dom
IPR033344CURT1
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid