CotAD_73406, CotAD_73406_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|1029078464|ref|XP_016699413.1| (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Gossypium hirsutum]) HSP 1 Score: 146.747 bits (369), Expect = 1.150e-43 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|1029078469|ref|XP_016699415.1| (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Gossypium hirsutum] >gi|1050553869|ref|XP_017621478.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Gossypium arboreum]) HSP 1 Score: 145.976 bits (367), Expect = 1.803e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQ+GQGNKIR
Sbjct: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQIGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|16973316|emb|CAC84110.1| (F6 [Gossypium hirsutum]) HSP 1 Score: 145.976 bits (367), Expect = 2.886e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQ+GQGNKIR
Sbjct: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQIGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|823247212|ref|XP_012456279.1| (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Gossypium raimondii] >gi|1029006155|ref|XP_016666942.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Gossypium hirsutum] >gi|1029078467|ref|XP_016699414.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Gossypium hirsutum] >gi|1050653138|ref|XP_017649979.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Gossypium arboreum] >gi|763805234|gb|KJB72172.1| hypothetical protein B456_011G163400 [Gossypium raimondii] >gi|1344126999|gb|PPD99462.1| hypothetical protein GOBAR_DD03508 [Gossypium barbadense] >gi|1347722274|gb|PPS18282.1| hypothetical protein GOBAR_AA02286 [Gossypium barbadense]) HSP 1 Score: 144.821 bits (364), Expect = 5.950e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR+KPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|508713547|gb|EOY05444.1| (NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]) HSP 1 Score: 144.05 bits (362), Expect = 6.072e-43 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|590657272|ref|XP_007034517.1| (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Theobroma cacao] >gi|1204915675|ref|XP_021290539.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Herrania umbratica] >gi|508713546|gb|EOY05443.1| GRIM-19 protein isoform 1 [Theobroma cacao]) HSP 1 Score: 143.665 bits (361), Expect = 1.666e-42 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|763805221|gb|KJB72159.1| (hypothetical protein B456_011G163300 [Gossypium raimondii]) HSP 1 Score: 142.124 bits (357), Expect = 2.586e-42 Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR+KPGM SVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRKKPGMVSVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|1334331089|gb|PNT46132.1| (hypothetical protein POPTR_003G173800v3 [Populus trichocarpa]) HSP 1 Score: 140.198 bits (352), Expect = 5.116e-42 Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIRSLH 74
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNK+R +
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRFARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKVRRVQ 74
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|1269946464|ref|XP_022722848.1| (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Durio zibethinus]) HSP 1 Score: 142.51 bits (358), Expect = 5.262e-42 Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTE+VIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTESVIRNKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. NCBI nr
Match: gi|823247294|ref|XP_012456323.1| (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Gossypium raimondii] >gi|763805222|gb|KJB72160.1| hypothetical protein B456_011G163300 [Gossypium raimondii]) HSP 1 Score: 142.51 bits (358), Expect = 5.498e-42 Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR+KPGM SVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRKKPGMVSVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Soybase Glyma v1.0
Match: pacid=30521559 (transcript=Glyma.20G079400.2 locus=Glyma.20G079400 ID=Glyma.20G079400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1) HSP 1 Score: 135.961 bits (341), Expect = 1.183e-32 Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA IR+KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIPNKGPSA+AIFL AFGAFS+GMYQVGQGNKIR
Sbjct: 1 MTEAYIRKKPGMASVKDMPVLQDGPPPGGFAPVRFARRIPNKGPSAVAIFLTAFGAFSWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Soybase Glyma v1.0
Match: pacid=30521558 (transcript=Glyma.20G079400.1 locus=Glyma.20G079400 ID=Glyma.20G079400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1) HSP 1 Score: 135.576 bits (340), Expect = 1.329e-32 Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA IR+KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIPNKGPSA+AIFL AFGAFS+GMYQVGQGNKIR
Sbjct: 1 MTEAYIRKKPGMASVKDMPVLQDGPPPGGFAPVRFARRIPNKGPSAVAIFLTAFGAFSWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Soybase Glyma v1.0
Match: pacid=30521560 (transcript=Glyma.20G079400.3 locus=Glyma.20G079400 ID=Glyma.20G079400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1) HSP 1 Score: 135.191 bits (339), Expect = 1.951e-32 Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA IR+KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIPNKGPSA+AIFL AFGAFS+GMYQVGQGNKIR
Sbjct: 1 MTEAYIRKKPGMASVKDMPVLQDGPPPGGFAPVRFARRIPNKGPSAVAIFLTAFGAFSWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Soybase Glyma v1.0
Match: pacid=30476626 (transcript=Glyma.10G128100.1 locus=Glyma.10G128100 ID=Glyma.10G128100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1) HSP 1 Score: 134.806 bits (338), Expect = 2.591e-32 Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA IR+KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIPNKGPSA+AIFL FGAFS+GMYQVGQGNKIR
Sbjct: 1 MTEAHIRKKPGMASVKDMPVLQDGPPPGGFAPVRFARRIPNKGPSAVAIFLTTFGAFSWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Cacao Genome Database
Match: pacid=27455977 (transcript=Thecc1EG020440t2 locus=Thecc1EG020440 ID=Thecc1EG020440t2.CGDv1.1 annot-version=v1.1) HSP 1 Score: 144.05 bits (362), Expect = 2.196e-35 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Cacao Genome Database
Match: pacid=27455976 (transcript=Thecc1EG020440t1 locus=Thecc1EG020440 ID=Thecc1EG020440t1.CGDv1.1 annot-version=v1.1) HSP 1 Score: 143.665 bits (361), Expect = 2.705e-35 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Rice Genome Annotation Project
Match: protein|NADH (dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed) HSP 1 Score: 132.494 bits (332), Expect = 8.526e-32 Identity = 60/71 (84.51%), Postives = 66/71 (92.96%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA +R KPGMASVKDMP+LQDGPPPGGFAPVRYARRIP KGPSA+AIFL FGAF++GMYQVGQGNK+R
Sbjct: 1 MTEAWVRHKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWGMYQVGQGNKVR 71
BLAST of CotAD_73406 vs. Populus trichicarpa v2.0
Match: pacid=26996851 (transcript=Potri.003G173800.1 locus=Potri.003G173800 ID=Potri.003G173800.1.v3.0 annot-version=v3.0) HSP 1 Score: 141.354 bits (355), Expect = 9.798e-35 Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNK+R
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRFARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKVR 71
BLAST of CotAD_73406 vs. Populus trichicarpa v2.0
Match: pacid=27044668 (transcript=Potri.001G054500.1 locus=Potri.001G054500 ID=Potri.001G054500.1.v3.0 annot-version=v3.0) HSP 1 Score: 137.117 bits (344), Expect = 1.959e-33 Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 1
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIP+KGPSAMAIFLAAFGAFSYGMY+VG+GNKIR
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRFARRIPSKGPSAMAIFLAAFGAFSYGMYEVGKGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A1U8KEM2_GOSHI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like OS=Gossypium hirsutum OX=3635 GN=LOC107914876 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 9.664e-44 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A1U8KAA7_GOSHI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like OS=Gossypium hirsutum OX=3635 GN=LOC107914879 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.514e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQ+GQGNKIR
Sbjct: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQIGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: Q8VXK6_GOSHI (F6 protein OS=Gossypium hirsutum OX=3635 GN=F6 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.424e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQ+GQGNKIR
Sbjct: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQIGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A0D2RNC1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G163400 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.998e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR+KPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A2P5SK92_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA02286 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.998e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR+KPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A1U8KFE1_GOSHI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Gossypium hirsutum OX=3635 GN=LOC107914878 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.998e-43 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR+KPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A061ET07_THECC (NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_020440 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.101e-43 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A061EL87_THECC (GRIM-19 protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020440 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.400e-42 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A0D2UU12_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G163300 PE=4 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.172e-42 Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEAVIR+KPGM SVKDMP+LQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR
Sbjct: 1 MTEAVIRKKPGMVSVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Match: A0A2K2B8M9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G173800v3 PE=4 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 4.298e-42 Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIRSLH 74
MTEAVIR KPGMASVKDMP+LQDGPPPGGFAPVR+ARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNK+R +
Sbjct: 1 MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRFARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKVRRVQ 74
BLAST of CotAD_73406 vs. Araport11
Match: gnl|BL_ORD_ID|17326 (AT2G33220.2 | GRIM-19 protein | Chr2:14078974-14080501 FORWARD LENGTH=174 | 201606) HSP 1 Score: 132.494 bits (332), Expect = 4.975e-41 Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA+IR+KPGMASVKDMPLLQDGPPPGGFAPVRYARRI N GPSAMAIFL GAF++GMYQVGQGNKIR
Sbjct: 1 MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Araport11
Match: gnl|BL_ORD_ID|17325 (AT2G33220.1 | GRIM-19 protein | Chr2:14078974-14079929 FORWARD LENGTH=143 | 201606) HSP 1 Score: 130.568 bits (327), Expect = 8.666e-41 Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA+IR+KPGMASVKDMPLLQDGPPPGGFAPVRYARRI N GPSAMAIFL GAF++GMYQVGQGNKIR
Sbjct: 1 MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. Araport11
Match: gnl|BL_ORD_ID|738 (AT1G04630.1 | GRIM-19 protein | Chr1:1289921-1290986 REVERSE LENGTH=143 | 201606) HSP 1 Score: 130.183 bits (326), Expect = 1.165e-40 Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA+IR KPGMASVKDMPLLQDGPPPGGFAPVRYARRI N GPSAMA+FLA GAF++GMYQVGQGNKIR
Sbjct: 1 MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Match: NDADB_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana OX=3702 GN=At2g33220 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.341e-40 Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA+IR+KPGMASVKDMPLLQDGPPPGGFAPVRYARRI N GPSAMAIFL GAF++GMYQVGQGNKIR
Sbjct: 1 MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Match: NDADA_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana OX=3702 GN=MEE4 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.121e-39 Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0
Query: 1 MTEAVIREKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
MTEA+IR KPGMASVKDMPLLQDGPPPGGFAPVRYARRI N GPSAMA+FLA GAF++GMYQVGQGNKIR
Sbjct: 1 MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWGMYQVGQGNKIR 71
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Match: NDUAD_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus OX=10090 GN=Ndufa13 PE=1 SV=3) HSP 1 Score: 47.7506 bits (112), Expect = 3.011e-7 Identity = 19/50 (38.00%), Postives = 31/50 (62.00%), Query Frame = 0
Query: 22 QDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
QD PPPGG+ P+ Y R +P +G S ++F GA +G +++ + N+ R
Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQER 57
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens OX=9606 GN=NDUFA13 PE=1 SV=3) HSP 1 Score: 46.595 bits (109), Expect = 6.313e-7 Identity = 18/50 (36.00%), Postives = 28/50 (56.00%), Query Frame = 0
Query: 22 QDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
QD PPPGG+ P+ Y R +P +G S ++ G YG + + + N+ R
Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRER 57
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA13 PE=2 SV=3) HSP 1 Score: 46.595 bits (109), Expect = 6.448e-7 Identity = 18/50 (36.00%), Postives = 28/50 (56.00%), Query Frame = 0
Query: 22 QDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
QD PPPGG+ P+ Y R +P +G S ++ G YG + + + N+ R
Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRER 57
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Match: NDUAD_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes OX=9598 GN=NDUFA13 PE=2 SV=3) HSP 1 Score: 46.595 bits (109), Expect = 6.586e-7 Identity = 18/50 (36.00%), Postives = 28/50 (56.00%), Query Frame = 0
Query: 22 QDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
QD PPPGG+ P+ Y R +P +G S ++ G YG + + + N+ R
Sbjct: 8 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRER 57
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Match: NDUAD_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis OX=9541 GN=NDUFA13 PE=2 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 7.742e-7 Identity = 18/50 (36.00%), Postives = 28/50 (56.00%), Query Frame = 0
Query: 22 QDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIR 71
QD PPPGG+ P+ Y R +P +G S ++ G YG + + + N+ R
Sbjct: 27 QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRER 76 The following BLAST results are available for this feature:
BLAST of CotAD_73406 vs. NCBI nr
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr) Total hits: 10
BLAST of CotAD_73406 vs. Soybase Glyma v1.0
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Soybase Glyma) Total hits: 4
BLAST of CotAD_73406 vs. Cacao Genome Database
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Cacao) Total hits: 2
BLAST of CotAD_73406 vs. Rice Genome Annotation Project
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Oryza sativa) Total hits: 1
BLAST of CotAD_73406 vs. Populus trichicarpa v2.0
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Populus Genome) Total hits: 2
BLAST of CotAD_73406 vs. ExPASy TrEMBL
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL) Total hits: 10
BLAST of CotAD_73406 vs. Araport11
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11) Total hits: 3
BLAST of CotAD_73406 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot) Total hits: 7
InterPro
Analysis Name: InterProScan analysis of Gossypium hirsutum AD1 genome protein v1.0 (BGI-CGP)
Date Performed: 2015-11-23
Sequences
The
following sequences are available for this feature:
mRNA sequence >CotAD_73406_BGI-AD1_v1.0 ID=CotAD_73406_BGI-AD1_v1.0; Name=CotAD_73406; organism=Gossypium hirsutum; type=mRNA; length=225bpback to top protein sequence of CotAD_73406_BGI-AD1_v1.0 >CotAD_73406_BGI-AD1_v1.0 ID=CotAD_73406_BGI-AD1_v1.0; Name=CotAD_73406_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=74bpback to top mRNA from alignment at Dt_chr11:31190800..31191112+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>CotAD_73406_BGI-AD1_v1.0 ID=CotAD_73406_BGI-AD1_v1.0; Name=CotAD_73406; organism=Gossypium hirsutum; type=mRNA; length=313bp; location=Sequence derived from: Dt_chr11:31190800..31191112+ (Gossypium hirsutumback to top Coding sequence (CDS) from alignment at Dt_chr11:31190800..31191112+ >CotAD_73406_BGI-AD1_v1.0 ID=CotAD_73406_BGI-AD1_v1.0; Name=CotAD_73406; organism=Gossypium hirsutum; type=CDS; length=225bp; location=Sequence derived from: Dt_chr11:31190800..31191112+ (Gossypium hirsutumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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