Gohir.D04G043300.1

Transcript Overview
NameGohir.D04G043300.1
Unique NameddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length1356
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:6977046..6978722 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
aduaduR1083Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aduaduR1099Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aduaduR1125Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aduaduR1134Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adaduL1022Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adsaduL0957Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adugdR1130Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adugdR1151Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adugdR1163Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adugdR1195Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adugdR1204Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adugecR1279Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adugecR1302Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adugecR1313Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adugecR1358Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adugecR1364Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adutoR1009Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adutoR1022Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
aduhgsR1055Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adutoR1036Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
aduhgsR1066Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adutoR1067Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adutoR1076Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
aduhgsR1098Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
aduhgsR1107Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
aduhnR1346Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adsaduL2441Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adaduL2660Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
aduhnR1373Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduhnR1389Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduhnR1404Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduhnR1446Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduhnR1454Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aduawR0984Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
aduawR1020Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
aduawR1048Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
adub1jR1047Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
adub1jR1074Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aduuhR1006Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduuhR1017Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduuhR1043Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduuhR1050Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
adud3dR1005Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
adud3dR1044Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
adud3dR1059Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
adud8iR0690Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adud8iR0694Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adud8iR0716Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adud8iR0726Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adud3kR0735Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
adud3kR0748Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
adud3kR0782Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
adud3kR0787Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
adud9iR0709Gossypium laxum (D9) genome ISU_v1Gossypium laxum
adud9iR0732Gossypium laxum (D9) genome ISU_v1Gossypium laxum
adud9iR0742Gossypium laxum (D9) genome ISU_v1Gossypium laxum
adudfiR0671Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adudfiR0699Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adudfiR0702Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adudfiR0714Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adudsiR0573Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
adudsiR0582Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
adudsiR0597Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
adudsiR0604Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
adudtoR0650Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
adudtoR0661Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
adudtoR0676Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
adudooR0735Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adudqiR0687Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
adudqiR0699Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
adudooR0740Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adudqiR0730Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
adudooR0764Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adudooR0773Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adudqiR0735Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
adudtcR0928Gossypium harknessii (D2-2) genome CRI_v1Gossypium harknessii
adudtcR0939Gossypium harknessii (D2-2) genome CRI_v1Gossypium harknessii
adudtcR0984Gossypium harknessii (D2-2) genome CRI_v1Gossypium harknessii
adugauR0801Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adugauR0820Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adugauR0840Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adufnR0952Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adufnR0980Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adufnR0997Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adugkR0822Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adugkR0845Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adugkR0858Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adugkR0879Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adugrbR0919Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adugrbR0954Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adugrbR0973Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adugosR0971Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adugosR0996Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adugosR1022Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adugroR1061Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adugroR1074Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adugroR1088Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adugroR1117Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adugrhR0971Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adugrhR0988Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adugrhR1006Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adugrhR1027Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adugtiR0973Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adugtiR1012Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adugtiR1027Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adugtbR0953Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
adugtbR0978Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
adugtbR0996Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
aduhwR1006Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
aduhwR1019Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
aduhwR1033Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
aduhwR1059Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum

Orthologs
Gene/TranscriptAssemblySpecies
rna-gnl|WGS:VKDL|Gobar.D04G048000.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
GekD0401T043900.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
rna-gnl|WGS:JABFAB|Goklo_00043308-RAGossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
gene-E1A91_D04G049100v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS:JABEZV|Golax_00005167-RAGossypium laxum (D9) genome ISU_v1Gossypium laxum
EVM0010671.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
Golon.011G082400-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
rna-gnl|WGS:JABEZW|Gotri_00040433-RAGossypium trilobum (D8) genome ISU_v1Gossypium trilobum
Grot_13G019270.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
gene-E1A91_A05G403000v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS:JABFAB|Goklo_00021730-RAGossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
rna-gnl|WGS_VKGE|Gotom.A11G084000.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
GekA0501T427200.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
rna-gnl|WGS_VKGI|Godar.A05G416900.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS_VKGE|Gotom.A05G418700.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
EVM0004195.1Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
TURN.04g085190.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Ghe11G08410Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
D5.v1.pred_00008015-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Ghe04G05650Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS:JABFAF|Goshw_00024213-RAGossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
Ghe13G10300Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Gar11G07980Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Grai_11G031650.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
rna-gnl|WGS:JABFAB|Goklo_00005983-RAGossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
Ghar_4G001753.mRNA1Gossypium harknessii (D2-2) genome CRI_v1Gossypium harknessii
Kirkii_Juiced.00g368630.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS:JABEZY|Gogos_00028923-RAGossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
Grai_13G010200.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
Grot_11G031550.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
GstA0501T386300.1Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
rna-gnl|WGS:JABEZX|Golob_00005519-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
TURN.01g303620.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
rna-gnl|WGS:JABEZV|Golax_00034682-RAGossypium laxum (D9) genome ISU_v1Gossypium laxum
rna-gnl|WGS_VKGI|Godar.D04G051300.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
EVM0028368.1Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
rna-gnl|WGS:JABEZX|Golob_00030530-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Kirkii_Juiced.00g293750.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
GekA1101T084600.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
rna-gnl|WGS:JABEZY|Gogos_00004120-RAGossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
Grai_04G019520.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
rna-gnl|WGS:JABEZW|Gotri_00005570-RAGossypium trilobum (D8) genome ISU_v1Gossypium trilobum
Gosto.004G051400-1Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
rna-gnl|WGS:JABFAF|Goshw_00005703-RAGossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
EVM0002775.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
rna-gnl|WGS:JABEZY|Gogos_00014664-RAGossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
rna-gnl|WGS:JABFAA|Goari_00005560-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
D5.v1.pred_00038183-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Ghar_11G002793.mRNA1Gossypium harknessii (D2-2) genome CRI_v1Gossypium harknessii
rna-gnl|WGS_VKGE|Gotom.D04G051100.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS:JABFAF|Goshw_00041518-RAGossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
gene-EPI10_025601-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
rna-gnl|WGS:JABEZX|Golob_00037563-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
rna-gnl|WGS:JABFAE|Goarm_00032102-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
evm.model.Goano04G2001Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
rna-gnl|WGS:JABEZW|Gotri_00020248-RAGossypium trilobum (D8) genome ISU_v1Gossypium trilobum
rna-gnl|WGS_VKGI|Godar.A11G084100.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:JABFAA|Goari_00032990-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
mikado.E11G2058.1Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
GstD0401T044200.1Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
Kirkii_Juiced.00g153730.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS:JABFAE|Goarm_00004895-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
Gar04G05130Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Golon.004G051000-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gene-EPI10_008658-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gh_D04G0389Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.D04G043300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gh_A11G0655Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gh_D11G0768Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.D11G076900.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
Gohir.A05G372300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
Gh_A05G3217Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.A05G372300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gohir.D04G043300ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.v3.1Gossypium hirsutumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1Gossypium hirsutumpolypeptide
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1-proteinGossypium hirsutumpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.exon.3ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.exon.3Gossypium hirsutumexon
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.exon.2ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.exon.2Gossypium hirsutumexon
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.exon.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.exon.1Gossypium hirsutumexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.three_prime_UTR.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.three_prime_UTR.1Gossypium hirsutumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.CDS.2ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.CDS.2Gossypium hirsutumCDS
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.CDS.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.CDS.1Gossypium hirsutumCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.five_prime_UTR.2ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.five_prime_UTR.2Gossypium hirsutumfive_prime_UTR
ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.five_prime_UTR.1ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1.five_prime_UTR.1Gossypium hirsutumfive_prime_UTR


Homology
BLAST of Gohir.D04G043300.1 vs. Araport11
Match: AT5G39200.1 (| Symbols: no symbol available | no full name available | chr5:15694307-15695042 REVERSE LENGTH=201)

HSP 1 Score: 65.4698 bits (158), Expect = 2.450e-12
Identity = 71/250 (28.40%), Postives = 100/250 (40.00%), Query Frame = 0
Query:   86 DKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPM-NCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSP----QNGSSRSWFSWFSCCRC 330
            D++ K  Y P+RIP SVF+       +WS  SNESLFSIH+G+ SFSK     +YKSGELT    +  A   +      +D+  A             T A T EV      + PK      +  + N P             K  P  ++ I P  +C S  S +S  + SF FP L                  G +QQ++        E  K      ++++ + P    Q G+      W SCC C
Sbjct:    2 DQETKPGYEPDRIPHSVFATSVTPKQEWSIQSNESLFSIHMGDHSFSK-----MYKSGELTNF--EYTASPYISYYNNNIDNKIA------------PTDAGTKEVNITMVETGPKTGN---RDGLTNVP-------------KPDPRQQIPISPTKSCHSETSNNS--TTSFAFPTL------------------GEYQQERKTSLNTKSESGKRELSRLDSKTGLYPDDSKQGGAGAGAGGWLSCCLC 196          
BLAST of Gohir.D04G043300.1 vs. Araport11
Match: AT3G02125.1 (| Symbols: no symbol available | no full name available | chr3:378205-379382 FORWARD LENGTH=355)

HSP 1 Score: 62.003 bits (149), Expect = 1.452e-10
Identity = 79/272 (29.04%), Postives = 120/272 (44.12%), Query Frame = 0
Query:   93 YVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDE--QIIAQKNVLPSLK--------ELDDMAAMD----ENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMN-CMSSLSEDSNISI-SFTFPVLTATDG-GRLSSVYADQNIKGSHQQQQPLPQQPL---EEEKKEFTEEK---EAQSPVSPQNGSSRSWFS-----------WFSCCRC 330
            Y P RIPSSVFS KP    +WS ASNESLFSIH GN S S        +  E+ + +E   +I + N +P           E + +A  +    EN+  D  +     K +EV  D  H E +   +E ++ V+          V     + KP     I+  +  +S  S+ SN SI SF FP+L   D   +  S+    N+    + +  LPQ  +   +++ + ++E     E+Q    PQ  +S+ + S           WFSC  C
Sbjct:   89 YDPTRIPSSVFSSKPGNSTEWSLASNESLFSIHDGNFSIS-----TALRLAEIPRFEETVHVITEINSVPLPPPVKKPNEYEKETIAEKEPYQVENSNSDIEDNEEEEKMSEVESDDEHEEEQTDMIEAEALVEKE--------VIETVKENKPEDSNSIVSHSPSISCRSDTSNNSIGSFAFPLLQKEDAVTKTPSMQIKGNVSHKRRPEYQLPQSRMLQPQQQLQPYSESNMLTESQPEPQPQRKASKKFESRTQSLKASRTCWFSCFHC 347          
BLAST of Gohir.D04G043300.1 vs. Araport11
Match: AT2G03630.2 (| Symbols: no symbol available | no full name available | chr2:1103205-1103863 FORWARD LENGTH=198)

HSP 1 Score: 60.077 bits (144), Expect = 1.739e-10
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 0
Query:   86 DKQEKQVYVPNRIPSSVFSE-KPATPMDWSTASNESLFSIHVGNGSFSKDQFFM-----LYKSGEL 145
            D+     Y PNRIPSSVF   K   P +WS  SNESLFSIH+GN SF+     +     LYKSGEL
Sbjct:   98 DRDNNGKYDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSFTGYGGDLMKSGELYKSGEL 163          
BLAST of Gohir.D04G043300.1 vs. Araport11
Match: AT1G74220.1 (| Symbols: no symbol available | no full name available | chr1:27913099-27914134 REVERSE LENGTH=316)

HSP 1 Score: 59.6918 bits (143), Expect = 8.032e-10
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   97 RIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELT 146
            RIPS VF+   +T  +WST SNESLFSIH+GN SF+   +F   KSGELT
Sbjct:   89 RIPSHVFARTTSTAPEWSTISNESLFSIHMGNNSFTGGDYF---KSGELT 135          
BLAST of Gohir.D04G043300.1 vs. Araport11
Match: AT2G03630.1 (| Symbols: no symbol available | no full name available | chr2:1103205-1104230 FORWARD LENGTH=310)

HSP 1 Score: 56.225 bits (134), Expect = 9.842e-9
Identity = 68/239 (28.45%), Postives = 99/239 (41.42%), Query Frame = 0
Query:   93 YVPNRIPSSVFSE-KPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNV-LPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLT--ATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSC 327
            Y PNRIPSSVF   K   P +WS  SNESLFSIH+GN SF+      L KSGEL K  E +     + +P +   +    ++E    +S  E  V     V E H+ S  +          +  P V            K PT              +  SN + SF+FP+L   A+D  ++ +                      E++K++  + +E+Q PV+      +S    FSC
Sbjct:  105 YDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSFT-GYGGDLMKSGELYKSGELLAYSPGLPMPPVPGSEPKPVVEEPKVVESDKEEKVVL---VEETHTSSSDEEEGKRESHEKEQHPAVSW----------KTPTT---------SYRSNRSSNSAHSFSFPILAGAASDSRKVET----------------------EKQKEQANQSQESQKPVADATNQKQSMCRCFSC 298          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium darwinii OX=34276 GN=ES288_D04G051300v1 PE=4 SV=1)

HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein LOC107934332 OS=Gossypium hirsutum OX=3635 GN=LOC107934332 PE=4 SV=1)

HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium barbadense OX=3634 GN=ES319_D04G048000v1 PE=4 SV=1)

HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 330/331 (99.70%), Postives = 331/331 (100.00%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVD+SPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDSSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G051100v1 PE=4 SV=1)

HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 329/331 (99.40%), Postives = 329/331 (99.40%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSP KVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENT KDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPIKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTTKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_002380 PE=4 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 328/331 (99.09%), Postives = 329/331 (99.40%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGE SSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPK+VRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAE EVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEESSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKEVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEAEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium davidsonii OX=34287 GN=Godav_002320 PE=4 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 328/331 (99.09%), Postives = 329/331 (99.40%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGE SSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPK+VRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAE EVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEESSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKEVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEAEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D04G049100v1 PE=4 SV=1)

HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 328/331 (99.09%), Postives = 329/331 (99.40%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAE EVQSSVDNSPIVDHSAAVG+LSLKKKPTAEVK LPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEAEVQSSVDNSPIVDHSAAVGSLSLKKKPTAEVKNLPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium trilobum OX=34281 GN=Gotri_002263 PE=4 SV=1)

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 328/331 (99.09%), Postives = 328/331 (99.09%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            M SGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAE EVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVK LPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MVSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEAEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKNLPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium raimondii OX=29730 GN=B456_012G048600 PE=4 SV=1)

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 326/331 (98.49%), Postives = 327/331 (98.79%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNN SNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKM E EVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVK LPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPL+EEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNGSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMTEAEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKNLPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLDEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
BLAST of Gohir.D04G043300.1 vs.
Match: Uncharacterized (protein OS=Gossypium gossypioides OX=34282 GN=Gogos_001846 PE=4 SV=1)

HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 326/331 (98.49%), Postives = 328/331 (99.09%), Query Frame = 0
Query:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEPKMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331
            MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSS GSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKS+LKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVA+DHSHSEPKMAE EVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVK LPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS
Sbjct:    1 MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSLGSSDSYSSSGSGSSQDLFDFLGNNDSNDDHTGKSQLKSPKKVRVSFASSTDKQEKQVYVPNRIPSSVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDEQIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAQDHSHSEPKMAEAEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKNLPMNCMSSLSEDSNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKEFTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS 331          
The following BLAST results are available for this feature:
BLAST of Gohir.D04G043300.1 vs. Araport11
Analysis Date: 2025-04-01 (BLASTP of UTX v3.1 Gossypium hirsutum 'TM-1' proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G39200.12.450e-1228.40| Symbols: no symbol available | no full name avai... [more]
AT3G02125.11.452e-1029.04| Symbols: no symbol available | no full name avai... [more]
AT2G03630.21.739e-1053.03| Symbols: no symbol available | no full name avai... [more]
AT1G74220.18.032e-1060.00| Symbols: no symbol available | no full name avai... [more]
AT2G03630.19.842e-928.45| Symbols: no symbol available | no full name avai... [more]
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BLAST of Gohir.D04G043300.1 vs. Araport11
Analysis Date: 2025-04-01 (BLASTP of UTX v3.1 Gossypium hirsutum 'TM-1' proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Gohir.D04G043300.1 vs.
Analysis Date: 2025-04-01 (BLASTP of UTX v3.1 Gossypium hirsutum 'TM-1' proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
Uncharacterized0.000e+0100.00protein OS=Gossypium darwinii OX=34276 GN=ES288_D0... [more]
Uncharacterized0.000e+0100.00protein LOC107934332 OS=Gossypium hirsutum OX=3635... [more]
Uncharacterized0.000e+099.70protein OS=Gossypium barbadense OX=3634 GN=ES319_D... [more]
Uncharacterized0.000e+099.40protein OS=Gossypium tomentosum OX=34277 GN=ES332_... [more]
Uncharacterized0.000e+099.09protein OS=Gossypium klotzschianum OX=34286 GN=Gok... [more]
Uncharacterized0.000e+099.09protein OS=Gossypium davidsonii OX=34287 GN=Godav_... [more]
Uncharacterized0.000e+099.09protein OS=Gossypium mustelinum OX=34275 GN=E1A91_... [more]
Uncharacterized0.000e+099.09protein OS=Gossypium trilobum OX=34281 GN=Gotri_00... [more]
Uncharacterized0.000e+098.49protein OS=Gossypium raimondii OX=29730 GN=B456_01... [more]
Uncharacterized0.000e+098.49protein OS=Gossypium gossypioides OX=34282 GN=Gogo... [more]
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InterPro
Analysis Name: InterProScan Analysis for UTX v3.1 Gossypium hirsutum 'TM-1' proteins
Date Performed: 2025-04-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33673SUPPRESSOR SRP40-LIKE PROTEINcoord: 11..330

Sequences
The following sequences are available for this feature:

mRNA sequence

>ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1; Name=Gohir.D04G043300.1; organism=Gossypium hirsutum; type=mRNA; length=1356bp
TATATCCCATTCTTTTCCTCTTAGTTTTCCCCTACATTCTTTCATCCCTT
TTTTAGCAGACTGCTTTGAAGAGAGTATGATTGCTCTTCTTGAAGATCCA
ATACTATTGTCAATGTTTTAAAATATGGGAAGTGGTCATGAATTTAATGA
AGAAGGGGAAGGAAGCAGCAAGCACTATTTGACAGATTATGAAGTTAATT
TGAACGAAATTAAACCATTGTCAAGCCATGGAAGTTCAGACTCTTATTCC
TCATCAGGATCAGGTTCATCTCAGGACCTTTTTGATTTCCTTGGAAACAA
TGACTCCAATGATGATCATACCGGGAAATCCGAACTCAAATCACCAAAAA
AGGTTCGTGTTTCGTTTGCGAGTTCAACCGATAAGCAAGAAAAGCAAGTC
TACGTACCGAATAGGATACCGTCTTCGGTTTTCAGTGAGAAGCCTGCAAC
GCCCATGGATTGGAGCACTGCTTCAAATGAATCATTGTTCAGCATTCATG
TGGGAAATGGCAGCTTCTCAAAGGATCAGTTCTTTATGTTATACAAGTCT
GGAGAATTGACCAAGTTAGACGAGCAAATCATTGCTCAAAAGAACGTGTT
ACCGTCTCTGAAAGAGTTGGATGATATGGCTGCAATGGATGAAAATACAG
CCAAAGATTCAGGAAATGAAGCTACAGTGGCCAAAACCAATGAAGTTGCA
GAAGACCATAGCCATAGCGAGCCGAAGATGGCTGAGGTTGAGGTTCAAAG
TTCAGTTGACAATTCTCCGATTGTGGATCATAGTGCAGCTGTTGGCAATC
TTAGCCTGAAAAAGAAACCTACCGCAGAAGTGAAAATTTTGCCTATGAAT
TGCATGTCCAGCCTTTCTGAGGACAGCAATATCAGCATTTCCTTTACCTT
CCCTGTGTTGACAGCCACTGATGGTGGAAGATTGAGCTCCGTTTATGCTG
ACCAAAACATTAAGGGATCACACCAGCAGCAGCAACCACTGCCCCAGCAG
CCGCTGGAGGAGGAGAAGAAGGAATTTACAGAGGAAAAGGAGGCACAAAG
CCCGGTTTCACCCCAAAATGGTTCGAGTCGAAGTTGGTTTTCCTGGTTTT
CTTGCTGCCGATGTTCTTGAACTTTCCACACTGTTTTTTGTCTATGAAAT
TTGACCAGTTTCCTGTCGCAGCAAGTGGAGGCAAATTTCTATTTAAGAAT
GTTGGTCTAGTTTTATACAGTTTCTTGGTGTAATATAATGTGAATGTTTT
ATCAATGTCGTTTACAAAGGATTGAAATTATATAGTTTGAAAAAACTAAA
GCTGGGAATAATTGATAAGTCTTTTGACAGAAAATAAGCAAAAATGATTT
TGATAC
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protein sequence of ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1

>ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1; Name=ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1; organism=Gossypium hirsutum; type=polypeptide; length=332bp
MGSGHEFNEEGEGSSKHYLTDYEVNLNEIKPLSSHGSSDSYSSSGSGSSQ
DLFDFLGNNDSNDDHTGKSELKSPKKVRVSFASSTDKQEKQVYVPNRIPS
SVFSEKPATPMDWSTASNESLFSIHVGNGSFSKDQFFMLYKSGELTKLDE
QIIAQKNVLPSLKELDDMAAMDENTAKDSGNEATVAKTNEVAEDHSHSEP
KMAEVEVQSSVDNSPIVDHSAAVGNLSLKKKPTAEVKILPMNCMSSLSED
SNISISFTFPVLTATDGGRLSSVYADQNIKGSHQQQQPLPQQPLEEEKKE
FTEEKEAQSPVSPQNGSSRSWFSWFSCCRCS*
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mRNA from alignment at D04:6977046..6978722-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1; Name=Gohir.D04G043300.1; organism=Gossypium hirsutum; type=mRNA; length=1677bp; location=Sequence derived from: D04:6977046..6978722- (Gossypium hirsutum
TATATCCCATTCTTTTCCTCTTAGTTTTCCCCTACATTCTTTCATCCCTT TTTTAGCAGACTGCTTTGAAGAGAGTATGATTGCTCTTCTTGAAGATCCA ATACTATTGTCAATGTTTTAAGTGAGTTTTGATTCATTTATATATGTTTC TACTGTATTCGGAGCTCAACGGAGATTTTAGGTAAATTTCCTTAGTTTTT ACTTTAATTTTGTACCTCACGAAGCCAATTCTGATTCAGAATATGGGAAG TGGTCATGAATTTAATGAAGAAGGGGAAGGAAGCAGCAAGCACTATTTGA CAGATTATGAAGTTAATTTGAACGAAATTAAACCATTGTCAAGCCATGGA AGTTCAGACTCTTATTCCTCATCAGGATCAGGTTCATCTCAGGACCTTTT TGATTTCCTTGGAAACAATGACTCCAATGATGATCATACCGGGAAATCCG AACTCAAATCACCAAAAAAGGTTCGTGTTTCGTTTGCGAGTTCAACCGAT AAGCAAGAAAAGCAAGTCTACGTACCGAATAGGATACCGTCTTCGGTTTT CAGTGAGAAGCCTGCAACGCCCATGGATTGGAGCACTGCTTCAAATGAAT CATTGTTCAGCATTCATGTGGGAAATGGCAGCTTCTCAAAGGATCAGTTC TTTATGTTATACAAGTCTGGAGAATTGACCAAGTTAGACGAGCAAATCAT TGCTCAAAAGAACGTGTTACCGTCTCTGAAAGAGTTGGATGATATGGCTG CAATGGATGAAAATACAGCCAAAGATTCAGGAAATGAAGCTACAGTGGCC AAAACCAATGAAGTTGCAGAAGACCATAGCCATAGCGAGCCGAAGATGGC TGAGGTTGAGGTTCAAAGTTCAGTTGACAATTCTCCGATTGTGGATCATA GTGCAGCTGTTGGCAATCTTAGCCTGAAAAAGAAACCTACCGCAGAAGTG AAAATTTTGCCTATGAATTGCATGTCCAGCCTTTCTGAGGACAGCAATAT CAGCATTTCCTTTACCTTCCCTGTGTAAGTTCTAATTGTTTCTCCTTTCA TCTTATGTCCATAGTTACATGCTTTCGTTTTTCTTTAGTAGAAAATAGGT TAAGCTCGGTTCCGTGCCACTTTCCAATCTAGCAAATTTCAGTACTTGAA AAGATTTCTGATGCGGGCTTATCATCTCCTTTAGCCACCAAAAGCATTAC ATTGACTTGTTTTCGGTTTCATTTCAGGTTGACAGCCACTGATGGTGGAA GATTGAGCTCCGTTTATGCTGACCAAAACATTAAGGGATCACACCAGCAG CAGCAACCACTGCCCCAGCAGCCGCTGGAGGAGGAGAAGAAGGAATTTAC AGAGGAAAAGGAGGCACAAAGCCCGGTTTCACCCCAAAATGGTTCGAGTC GAAGTTGGTTTTCCTGGTTTTCTTGCTGCCGATGTTCTTGAACTTTCCAC ACTGTTTTTTGTCTATGAAATTTGACCAGTTTCCTGTCGCAGCAAGTGGA GGCAAATTTCTATTTAAGAATGTTGGTCTAGTTTTATACAGTTTCTTGGT GTAATATAATGTGAATGTTTTATCAATGTCGTTTACAAAGGATTGAAATT ATATAGTTTGAAAAAACTAAAGCTGGGAATAATTGATAAGTCTTTTGACA GAAAATAAGCAAAAATGATTTTGATAC
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Coding sequence (CDS) from alignment at D04:6977046..6978722-

>ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1 ID=ddGosHirs.TM-1.UTX.v3.1.Gohir.D04G043300.1.v3.1; Name=Gohir.D04G043300.1; organism=Gossypium hirsutum; type=CDS; length=996bp; location=Sequence derived from: D04:6977046..6978722- (Gossypium hirsutum
ATGGGAAGTGGTCATGAATTTAATGAAGAAGGGGAAGGAAGCAGCAAGCA
CTATTTGACAGATTATGAAGTTAATTTGAACGAAATTAAACCATTGTCAA
GCCATGGAAGTTCAGACTCTTATTCCTCATCAGGATCAGGTTCATCTCAG
GACCTTTTTGATTTCCTTGGAAACAATGACTCCAATGATGATCATACCGG
GAAATCCGAACTCAAATCACCAAAAAAGGTTCGTGTTTCGTTTGCGAGTT
CAACCGATAAGCAAGAAAAGCAAGTCTACGTACCGAATAGGATACCGTCT
TCGGTTTTCAGTGAGAAGCCTGCAACGCCCATGGATTGGAGCACTGCTTC
AAATGAATCATTGTTCAGCATTCATGTGGGAAATGGCAGCTTCTCAAAGG
ATCAGTTCTTTATGTTATACAAGTCTGGAGAATTGACCAAGTTAGACGAG
CAAATCATTGCTCAAAAGAACGTGTTACCGTCTCTGAAAGAGTTGGATGA
TATGGCTGCAATGGATGAAAATACAGCCAAAGATTCAGGAAATGAAGCTA
CAGTGGCCAAAACCAATGAAGTTGCAGAAGACCATAGCCATAGCGAGCCG
AAGATGGCTGAGGTTGAGGTTCAAAGTTCAGTTGACAATTCTCCGATTGT
GGATCATAGTGCAGCTGTTGGCAATCTTAGCCTGAAAAAGAAACCTACCG
CAGAAGTGAAAATTTTGCCTATGAATTGCATGTCCAGCCTTTCTGAGGAC
AGCAATATCAGCATTTCCTTTACCTTCCCTGTGTTGACAGCCACTGATGG
TGGAAGATTGAGCTCCGTTTATGCTGACCAAAACATTAAGGGATCACACC
AGCAGCAGCAACCACTGCCCCAGCAGCCGCTGGAGGAGGAGAAGAAGGAA
TTTACAGAGGAAAAGGAGGCACAAAGCCCGGTTTCACCCCAAAATGGTTC
GAGTCGAAGTTGGTTTTCCTGGTTTTCTTGCTGCCGATGTTCTTGA
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