HAU0512, HAU0512 (genetic_marker) gossypium spp

Marker Overview
NameHAU0512
Genbank IDBQ402262
TypeSSR
SpeciesGossypium spp.
Source SequenceBQ402262
Source TypeEST
Repeat Motif(TC)10
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0512_F: GTGAGAGGCGAGAAAGAAAG
Primer 2HAU0512_R: CCACACACAGACTCTCCAAA
Product Length232
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ402262
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:97952066..97952294 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:19105774..19106003 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:54647837..54648070 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:121383549..121383788 +Gossypium australe (G2) genome CRI_v1.1n/a
At11chromosomeAt11:81632120..81632348 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At11chromosomeAt11:81639592..81639820 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6680supercontigscaffold6680:212010..212238 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6680supercontigscaffold6680:219482..219710 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9501supercontigscaffold9501:144687..144915 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold620supercontigScaffold620:52821..53049 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:99617677..99617905 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017646.1chromosomeCM017646.1:109955305..109955533 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:98482439..98482667 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr11chromosomeChr11:111291559..111291787 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:109628619..109628849 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:83631698..83631925 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_07chromosomeChr_07:36950186..36950419 +Gossypium harknessii (D2-2) genome ISU_v1n/a
F11chromosomeF11:83424772..83425000 +Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BQ402262BQ402262Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch21_Dt.11N/A128.8HAU0512View
2Yumian-1 x 7235, RIL (2015)AD_ch21_Dt.11N/A40.9HAU0512View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A161.7HAU0512View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch21_Dt.11N/A86.3HAU0512View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch21_Dt.11N/A103.78HAU0512View
Sequence
>HAU0512 ID=HAU0512; Name=HAU0512; organism=Gossypium spp.; type=genetic_marker; length=232bp
GTGAGAGGCGAGAAAGAAAGTTAAGAAACATAGAAAATAGCAAAAGGGTA
TCTCTCTATTTGTCTCTCTTTCTCTCTCTCTATCTCTTTCTTTACAATTT
TTTTTTTTTTGCAGTGATTCTCCTCTTTCAGCTCAGCGTGTTTTGCATAC
AAAAAGAGAAAAAGAGTGAGACAAATATATATATTAAAACTTTTATATAT
TTTTTTAAAATATTTGGAGAGTCTGTGTGTGG