TMB2386, TMB2386 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB2386
AliasTMB200-1-M9
Genbank IDBV679753
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679753.1
Source Typegenomic
Repeat Motif(TTA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB2386_F: GAAGAGTCGAAATAAAAATACCACAA
Primer 2TMB2386_R: ACGGTGCAAACAGGTGAAGT
Product Length152
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679753
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:5189986..5190137 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:4764515..4764659 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:5301059..5301239 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3017.1supercontigscaffold3017.1:83917..84068 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:4811057..4811208 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:60808495..60808622 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:4909992..4910143 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:4716216..4716367 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:5033561..5033712 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:4899368..4899519 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:60391616..60391743 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At02chromosomeAt02:5166700..5166844 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2962supercontigscaffold2962:212696..212823 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10828supercontigscaffold10828:144042..144186 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:58242112..58242239 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:4737814..4737958 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:4720220..4720364 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:4877633..4877771 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:4930258..4930408 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:4809363..4809513 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:5149747..5149898 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:126625157..126625340 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:125747707..125747886 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679753.1BV679753.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A51.47TMB2386aView
2Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A92.42TMB2386cView
3Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A79.92TMB2386bView
4Emian-22 x 3-79, BC1 (2015)AD_ch24_Dt.08N/A187TMB2386bView
5TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A89.84tmb2386View
6AD-genome wide Reference Map (2009)AD_ch02_At.02N/A162tmb2386View
7TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A91.4tmb2386View
8GX1135 x GX100-2, F2 (2013)AD_ch02_At.02N/A28.9tmb2386View
9GX1135 x GX100-2, RIL (2015)AD_ch02_At.02N/A53.9tmb2386View
10GX1135 x GX100-2, RIL (2016)AD_ch02_At.02N/A53.9tmb2386View
11CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A58.6tmb2386View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A24.7tmb2386View
13TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A91.39TMB2386View
Sequence
>TMB2386 ID=TMB2386; Name=TMB2386; organism=Gossypium hirsutum; type=genetic_marker; length=152bp
GAAGAGTCGAAATAAAAATACCACAAAGTTAAAAAAGGTAACATTTTATT
GTTTATTGTTTATTATTATTATTATTATTATTATTATTATTTTGATTTTT
CTCTTTTTGAAACAAAAAATAAAAAAGGAGAAACTTCACCTGTTTGCACC
GT