NAU5433, NAU5433 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5433
Genbank IDDR453064
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDR453064.1
Source TypeEST
Repeat Motif(ggagca)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU5433_F: CTTAGGATGGCCGAATAAAA
Primer 2NAU5433_R: CAAGTGCTCCACCACAAAT
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR453064
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A06chromosomeA06:106329117..106329337 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018207.1chromosomeCM018207.1:101747843..101748075 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:114009957..114010189 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
CM016619.1chromosomeCM016619.1:30097118..30097339 +Gossypium australe (G2) genome CRI_v1.1
At_chr10chromosomeAt_chr10:23769430..23769650 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A06chromosomeA06:89924614..89924834 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A06chromosomeGhir_A06:109228487..109228707 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A06chromosomeA06:112023026..112023246 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A06chromosomeA06:110881071..110881291 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A06chromosomeA06:106770166..106770386 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At06chromosomeAt06:86140825..86141057 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold1286supercontigscaffold1286:285399..285631 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A06chromosomeGbar_A06:100666039..100666271 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A06chromosomeA06:103882383..103882615 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017615.1chromosomeCM017615.1:106780085..106780323 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017641.1chromosomeCM017641.1:111884381..111884613 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017693.1chromosomeCM017693.1:105084734..105084960 -Gossypium darwinii (AD5) genome HGS_v1.1
A06chromosomeA06:113049174..113049394 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr06chromosomeChr06:111978637..111978863 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr06chromosomeChr06:114164312..114164544 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR453064.1DR453064.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch06_At.06N/A44NAU5433View
2Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A98.81NAU5433View
3AD-genome wide Reference Map (2009)AD_ch06_At.06N/A181NAU5433View
4Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A63.2NAU5433View
5DH962 X Ji Mian 5, F2 (2015)AD_ch06_At.06N/A34.66NAU5433View
60-153 x sGK9708, RIL (2016)AD_ch06_At.06N/A42NAU5433View
7DH962 x Ji Mian 5, RIL (2015)AD_ch06_At.06N/A30.8NAU5433View
8SG 747 x Giza 75, BIL (2013)AD_ch06_At.06N/A66NAU5433View
9CCRI-36 x G2005, RIL (2016)AD_ch06_At.06N/A57.9NAU5433View
10TM-1 x Hai-7124, BC1 (2007)AD_ch06_At.06N/A99.4NAU5433-260View
11TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A57.4NAU5433-260View
12TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A55.2NAU5433-260View
13(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch06_At.06N/A44NAU5433View
14PD 94042 x (AD)4-08, F2 (2016)AD_ch06_At.06N/A167.3NAU5433View
Sequence
>NAU5433 ID=NAU5433; Name=NAU5433; organism=Gossypium hirsutum; type=genetic_marker; length=223bp
CTTAGGATGGCCGAATAAAACAAAAATCTCTAGCAAGTCATTCAAGTCTA
TGAAAACTACAAACTAACCTGTGTCAAAATCACAGATACCATCACAATAA
CAAATTTTTTAAATAGGAAAAACATTTGCAAAAATAAGAAAACCTCACTC
CCAGNCCAGTGGGAGCAGGAGCAGGAGCAGATACATCGATTCCAGGGGCC
AGGGATTTGTGGTGGAGCACTTG