|
|
Marker Overview
| Name | NAU4956 |
|---|
| Genbank ID | DT551006 |
|---|
| Type | SSR |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | TM-1
TM-1
|
|---|
| Source Sequence | DT551006.1
|
|---|
| Source Type | EST |
|---|
| Repeat Motif | (ctcttc)7 |
|---|
| PCR Condition | Annealing temperature: 57 |
|---|
| Primer 1 | NAU4956_F: CACTCTCTTTGCCTTTTGGT |
|---|
| Primer 2 | NAU4956_R: CTTCACGTCTTCCCCTTTTA |
|---|
| Restriction Enzyme | EcoRI; NotI |
|---|
| Publication | [view all] |
|---|
| Contact | Zhang, Tian-Zhen
|
|---|
| Comment | Primer data obtained in 2007-05 |
|---|
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Germplasm
| Stock Name | Type |
|---|
| TM-1 | accession |
| TM-1 | accession |
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch07_At.07 | N/A | 33.17 | NAU4956a | View |
| 2 | 0-153 x sGK9708, RIL (2016) | AD_ch16_Dt.07 | N/A | 68.1 | NAU4956a | View |
| 3 | Emian-22 x 3-79, BC1 (2011) | AD_ch16_Dt.07 | N/A | 90.56 | NAU4956b | View |
| 4 | 0-153 x sGK9708, RIL (2016) | AD_ch16_Dt.07 | N/A | 57.3 | NAU4956b | View |
| 5 | AD-genome wide Reference Map (2009) | AD_ch16_Dt.07 | N/A | 18 | nau4956 | View |
| 6 | H16 x T586, F2sel (2009) | AD_ch16_Dt.07 | N/A | 21.9 | nau4956 | View |
| 7 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch07_At.07 | N/A | 73.4 | nau4956 | View |
| 8 | (86-1 x G. anomalum) x Su8289, BC2F1 (2015) | ABD_Bh.07 | N/A | 130.6 | nau4956 | View |
| 9 | SG 747 x Giza 75, BIL (2013) | AD_ch16_Dt.07 | N/A | 42.7 | nau4956 | View |
| 10 | TM-1 x Hai-7124, BC1 (2007) | AD_ch16_Dt.07 | N/A | 50.7 | NAU4956-240 | View |
| 11 | TM-1 x Hai-7124, BC1 (2008) | AD_ch16_Dt.07 | N/A | 51.07 | NAU4956-240 | View |
| 12 | H16 x T586, F2 (2009) | AD_ch16_Dt.07 | N/A | 51 | NAU4956-240 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch16_Dt.07 | N/A | 79.8 | NAU4956-240 | View |
| 14 | MGG-293-793, MAGIC (2018) | AD_ch07_At.07 | N/A | 28 | NAU4956a | View |
Sequence
>NAU4956 ID=NAU4956; Name=NAU4956; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
CACTCTCTTTGCCTTTTGGTTCTCTTCCTCTTCCTCTTCCTCTTCCTCTT
CCTCTTCCTCTTCTTCACCCAAAAACCCCCGCCCGAAGCTAGGTGAAAGA
AGTTCTCTAATGGATACTCGTAAAAGGGGAAGACGTGAAG
|
