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Marker Overview
Name | NAU4956 |
Genbank ID | DT551006 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | TM-1 TM-1
|
Source Sequence | DT551006.1
|
Source Type | EST |
Repeat Motif | (ctcttc)7 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU4956_F: CACTCTCTTTGCCTTTTGGT |
Primer 2 | NAU4956_R: CTTCACGTCTTCCCCTTTTA |
Restriction Enzyme | EcoRI; NotI |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Germplasm
Stock Name | Type |
TM-1 | accession |
TM-1 | accession |
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch07_At.07 | N/A | 33.17 | NAU4956a | View |
2 | 0-153 x sGK9708, RIL (2016) | AD_ch16_Dt.07 | N/A | 68.1 | NAU4956a | View |
3 | Emian-22 x 3-79, BC1 (2011) | AD_ch16_Dt.07 | N/A | 90.56 | NAU4956b | View |
4 | 0-153 x sGK9708, RIL (2016) | AD_ch16_Dt.07 | N/A | 57.3 | NAU4956b | View |
5 | AD-genome wide Reference Map (2009) | AD_ch16_Dt.07 | N/A | 18 | nau4956 | View |
6 | H16 x T586, F2sel (2009) | AD_ch16_Dt.07 | N/A | 21.9 | nau4956 | View |
7 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch07_At.07 | N/A | 73.4 | nau4956 | View |
8 | (86-1 x G. anomalum) x Su8289, BC2F1 (2015) | ABD_Bh.07 | N/A | 130.6 | nau4956 | View |
9 | SG 747 x Giza 75, BIL (2013) | AD_ch16_Dt.07 | N/A | 42.7 | nau4956 | View |
10 | TM-1 x Hai-7124, BC1 (2007) | AD_ch16_Dt.07 | N/A | 50.7 | NAU4956-240 | View |
11 | TM-1 x Hai-7124, BC1 (2008) | AD_ch16_Dt.07 | N/A | 51.07 | NAU4956-240 | View |
12 | H16 x T586, F2 (2009) | AD_ch16_Dt.07 | N/A | 51 | NAU4956-240 | View |
13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch16_Dt.07 | N/A | 79.8 | NAU4956-240 | View |
14 | MGG-293-793, MAGIC (2018) | AD_ch07_At.07 | N/A | 28 | NAU4956a | View |
Sequence
>NAU4956 ID=NAU4956; Name=NAU4956; organism=Gossypium hirsutum; type=genetic_marker; length=140bp CACTCTCTTTGCCTTTTGGTTCTCTTCCTCTTCCTCTTCCTCTTCCTCTT CCTCTTCCTCTTCTTCACCCAAAAACCCCCGCCCGAAGCTAGGTGAAAGA AGTTCTCTAATGGATACTCGTAAAAGGGGAAGACGTGAAG
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