NAU4956, NAU4956 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU4956
Genbank IDDT551006
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT551006.1
Source TypeEST
Repeat Motif(ctcttc)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU4956_F: CACTCTCTTTGCCTTTTGGT
Primer 2NAU4956_R: CTTCACGTCTTCCCCTTTTA
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT551006
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:7999494..7999756 -
A07chromosomeA07:8729141..8729403 -
CM018221.1chromosomeCM018221.1:7588074..7588318 -
CM018208.1chromosomeCM018208.1:8905792..8906050 -
D5_07chromosomeD5_07:7477749..7477993 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:8975489..8975733 -
D10_07chromosomeD10_07:46317768..46318018 +
CM016620.1chromosomeCM016620.1:104324008..104324251 +
scaffold120.1supercontigscaffold120.1:216290..216552 +
Dt_chr1chromosomeDt_chr1:39804910..39805172 +
D07chromosomeD07:7532801..7533063 -
A07chromosomeA07:8071564..8071826 -
Ghir_D07chromosomeGhir_D07:7846622..7846884 -
Ghir_A07chromosomeGhir_A07:9035763..9036025 -
D07chromosomeD07:7521075..7521337 -
A07chromosomeA07:8552659..8552921 -
D07chromosomeD07:7797710..7797972 -
A07chromosomeA07:9001535..9001797 -
D07chromosomeD07:7652233..7652495 -
A07chromosomeA07:9056778..9057040 -
Dt07chromosomeDt07:8487272..8487516 -
scaffold2560supercontigscaffold2560:394345..394603 -
scaffold2445supercontigscaffold2445:271053..271297 -
Gbar_D07chromosomeGbar_D07:7879808..7880052 -
Gbar_A07chromosomeGbar_A07:8863724..8863982 -
D07chromosomeD07:7726933..7727177 -
A07chromosomeA07:8682916..8683174 -
CM017629.1chromosomeCM017629.1:7990769..7991019 -
CM017616.1chromosomeCM017616.1:8679027..8679284 -
CM017655.1chromosomeCM017655.1:8006736..8006986 -
CM017642.1chromosomeCM017642.1:8912427..8912684 -
CM017707.1chromosomeCM017707.1:7845824..7846068 -
CM017694.1chromosomeCM017694.1:8807482..8807747 -
D07chromosomeD07:7930408..7930670 -
A07chromosomeA07:9071904..9072166 -
Chr07chromosomeChr07:9224835..9225082 -
Chr07chromosomeChr07:9062430..9062674 -
Chr07chromosomeChr07:46099688..46099932 +
B_07chromosomeB_07:9115335..9115583 -
Chr01chromosomeChr01:7699934..7700181 -
chr01chromosomechr01:7065848..7066092 -
Chr_01chromosomeChr_01:7353698..7353941 -
Chr01chromosomeChr01:7633677..7633915 -
Chr01chromosomeChr01:6371434..6371679 -
Chr01chromosomeChr01:6661399..6661651 -
E07chromosomeE07:83574045..83574294 +
F07chromosomeF07:8107474..8107723 -
Chr13chromosomeChr13:179714304..179714551 +
Chr07chromosomeChr07:88188652..88188897 +
Chr07chromosomeChr07:13926404..13926649 -
Chr06chromosomeChr06:105693338..105693584 -
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT551006.1DT551006.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch07_At.07N/A33.17NAU4956aView
20-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A68.1NAU4956aView
3Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A90.56NAU4956bView
40-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A57.3NAU4956bView
5AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A18nau4956View
6H16 x T586, F2sel (2009)AD_ch16_Dt.07N/A21.9nau4956View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch07_At.07N/A73.4nau4956View
8(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.07N/A130.6nau4956View
9SG 747 x Giza 75, BIL (2013)AD_ch16_Dt.07N/A42.7nau4956View
10TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A50.7NAU4956-240View
11TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A51.07NAU4956-240View
12H16 x T586, F2 (2009)AD_ch16_Dt.07N/A51NAU4956-240View
13TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A79.8NAU4956-240View
14MGG-293-793, MAGIC (2018)AD_ch07_At.07N/A28NAU4956aView
Sequence
>NAU4956 ID=NAU4956; Name=NAU4956; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
CACTCTCTTTGCCTTTTGGTTCTCTTCCTCTTCCTCTTCCTCTTCCTCTT
CCTCTTCCTCTTCTTCACCCAAAAACCCCCGCCCGAAGCTAGGTGAAAGA
AGTTCTCTAATGGATACTCGTAAAAGGGGAAGACGTGAAG