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Marker Overview
Name | NAU3468 |
Genbank ID | CO107483 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (tgc)8 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3468_F: ATAGCACGATTGGGAAGAAC |
Primer 2 | NAU3468_R: AGGAAATGAGTCCTCAGCAG |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch13_At.13 | N/A | 83.06 | NAU3468 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 63 | NAU3468 | View |
3 | Yumian-1 x T586, RIL (2006) | AD_ch13_At.13 | N/A | 0 | NAU3468 | View |
4 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch13_At.13 | N/A | 49.6 | NAU3468 | View |
5 | Yumian-1 x T586, RIL (2015) | AD_ch13_At.13 | N/A | 120.1 | NAU3468 | View |
6 | Yumian-1 x 7235, RIL (2015) | AD_ch13_At.13 | N/A | 1.3 | NAU3468 | View |
7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch13_At.13 | N/A | 62.16 | NAU3468 | View |
8 | GX1135 x GX100-2, F2 (2013) | AD_ch13_At.13 | N/A | 77.7 | NAU3468 | View |
9 | GX1135 x GX100-2, RIL (2016) | AD_ch13_At.13 | N/A | 25.7 | NAU3468 | View |
10 | Emian-22 x 3-79, BC1 (2015) | AD_ch13_At.13 | N/A | 120.3 | NAU3468 | View |
11 | DH962 x Ji Mian 5, RIL (2015) | AD_ch13_At.13 | N/A | 43.8 | NAU3468 | View |
12 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch13_At.13 | N/A | 67.6 | NAU3468 | View |
13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch13_At.13 | N/A | 46.9 | NAU3468-300 | View |
14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch13_At.13 | N/A | 47.46 | NAU3468-300 | View |
15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch13_At.13 | N/A | 90.8 | NAU3468-300 | View |
16 | Yumian-1 x T586, RIL (2009) | AD_ch13_At.13 | N/A | 0 | NAU3468/200y(C13) | View |
17 | MGG-293-793, MAGIC (2018) | AD_ch13_At.13 | N/A | 120.3 | NAU3468 | View |
Sequence
>NAU3468 ID=NAU3468; Name=NAU3468; organism=Gossypium raimondii; type=genetic_marker; length=223bp ATAGCACGATTGGGAAGAACACCAGGAGTAGTACGTAAATGGGCATCAAT GTTGGAAGGGAAGCGAGAAATTGCCTGCTGCTGTTGCTGATGATGTTGGG CTTGTTTCTGAAGTTGTTGTAAGAGAAGCATTTGTTGCTGTTGCTGTTGT TGTTTCTGTTGGTGTAAGAGAAATTGCTGCTGCTGCTGCTGCTGCTGCAG CCGCTGCTGAGGACTCATTTCCT
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