NAU2238, NAU2238 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU2238
Genbank ID	DT048308
Type	SSR
Species	Gossypium hirsutum
Germplasm	Xuzhou 142 Xuzhou 142
Source Sequence	DT048308.1
Source Type	EST
Repeat Motif	AAT(11)
PCR Condition	Annealing temperature: 57
Primer 1	NAU2238_F: TTTTTCATGGCTGAACTTTG
Primer 2	NAU2238_R: ATTTCCATTGCTCGCTTTAC
Product Length	129
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DT048308

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D06	chromosome	D06:30586067..30586194 -
CM018207.1	chromosome	CM018207.1:49868061..49868179 +
At_chr1	chromosome	At_chr1:14696114..14696241 +
D06	chromosome	D06:29410870..29410997 -
Ghir_A06	chromosome	Ghir_A06:67697630..67697761 +
Ghir_D06	chromosome	Ghir_D06:29762308..29762435 -
D06	chromosome	D06:29031112..29031239 -
D06	chromosome	D06:29518044..29518171 -
D06	chromosome	D06:29113608..29113735 -
At06	chromosome	At06:45395204..45395322 -
scaffold24589	supercontig	scaffold24589:51387..51505 -
Gbar_A06	chromosome	Gbar_A06:49641409..49641527 -
A06	chromosome	A06:64574229..64574347 +
CM017628.1	chromosome	CM017628.1:29237610..29237734 -
CM017615.1	chromosome	CM017615.1:51312377..51312501 -
CM017641.1	chromosome	CM017641.1:53784214..53784343 -
CM017693.1	chromosome	CM017693.1:50760986..50761104 -
D06	chromosome	D06:29893479..29893606 -
B_06	chromosome	B_06:53435427..53435545 +
Chr10	chromosome	Chr10:20543050..20543159 -

Publications


Year	Publication
2006	Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T. Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theoretical and applied genetics. 2006; 112(3):430-439

Germplasm


Stock Name	Type
Xuzhou 142	accession
Xuzhou 142	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DT048308.1	DT048308.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	AD-genome wide Reference Map (2009)	AD_ch25_Dt.06	N/A	135	nau2238	View
2	AD-genome wide Reference Map (2009)	AD_ch06_At.06	N/A	102	nau2238	View
3	Yumian-1 x T586, F2:7 (2008)	AD_ch25_Dt.06	N/A	13.9	nau2238	View
4	Zhongmiansuo-12 x 8891, RIL (2007)	AD_ch25_Dt.06	N/A	10.5	nau2238	View
5	Yumian-1 x T586, RIL (2006)	AD_ch25_Dt.06	N/A	20.9	nau2238	View
6	DH962 x Jinmian-6, F2 (2009)	AD_ch25_Dt.06	N/A	45.9	nau2238	View
7	DH962 x Jinmian-6, F2 (2009)	AD_ch25_Dt.06	N/A	45.9	nau2238	View
8	Prema x 86-1, RIL (2015)	AD_ch25_Dt.06	N/A	54.52	nau2238	View
9	Yumian-1 x T586, RIL (2015)	AD_ch25_Dt.06	N/A	49.7	nau2238	View
10	DH962 X Ji Mian 5, F2 (2015)	AD_ch25_Dt.06	N/A	68.53	nau2238	View
11	GX1135 x VGX100-2, RIL (2016)	AD_ch23_Dt.09	N/A	272.4	nau2238	View
12	DH962 x Ji Mian 5, RIL (2015)	AD_ch25_Dt.06	N/A	45.2	nau2238	View
13	TM-1 x 3-79, RIL (2012)	AD_ch06_At.06	N/A	55.75	NAU2238a	View
14	TM-1 x 3-79, RIL (2014)	AD_ch06_At.06	N/A	55.8	NAU2238a	View
15	TM-1 x 3-79, RIL (2012)	AD_ch25_Dt.06	N/A	55.97	NAU2238b	View
16	TM-1 x 3-79, RIL (2014)	AD_ch25_Dt.06	N/A	52	NAU2238b	View
17	TM-1 x Hai-7124, BC1 (2007)	AD_ch06_At.06	N/A	97.4	NAU2238-120	View
18	TM-1 x Hai-7124, BC1 (2008)	AD_ch06_At.06	N/A	59.88	NAU2238-120	View
19	TM-1 x Hai-7124, BC1 (2012)	AD_ch06_At.06	N/A	58	NAU2238-120	View
20	TM-1 x Hai-7124, BC1 (2007)	AD_ch25_Dt.06	N/A	91.6	NAU2238-150	View
21	TM-1 x Hai-7124, BC1 (2008)	AD_ch25_Dt.06	N/A	50.1	NAU2238-150	View
22	TM-1 x Hai-7124, BC1 (2012)	AD_ch25_Dt.06	N/A	59.9	NAU2238-150	View
23	Yumian-1 x T586, RIL (2009)	AD_ch25_Dt.06	N/A	21.1	NAU2238/120t(C6,C25)	View
24	TM-1 x 3-79, RIL (2012.v3)	AD_ch06_At.06	N/A	55.75	NAU2238a	View
25	TM-1 x 3-79, RIL (2012.v3)	AD_ch25_Dt.06	N/A	51.98	NAU2238b	View
26	PD 94042 x (AD)4-08, F2 (2016)	AD_ch25_Dt.06	N/A	97	NAU2238	View

Sequence

>NAU2238 ID=NAU2238; Name=NAU2238; organism=Gossypium hirsutum; type=genetic_marker; length=129bp
TTTTTCATGGCTGAACTTTGCATTTATTAAGAGGCAAGTCTTTATTAGTA
CTGAATAATAATAATAATAATAATAATAATAATAATGTGTTTCTGACCTA
TCCATAATTGTAAAGCGAGCAATGGAAAT

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NAU2238, NAU2238 (genetic_marker) Gossypium hirsutum