NAU0874, NAU0874 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0874
AliasNAU874
NAU0874=NAU1093
NAU1093
Genbank IDBQ413236
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AT)18
PCR ConditionAnnealing temperature: 57
Primer 1NAU874_F: AAATGGCGTGCTTGAAATAC
Primer 2NAU874_R: TGTGATGAAGAACCCTCTCA
Product Length182
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ413236
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:58059029..58059174 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:109823287..109823463 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:52862096..52862241 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:104997040..104997216 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:117986814..117986990 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:9966856..9967001 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:17035802..17035961 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:50052998..50053143 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:30360007..30360185 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold24704supercontigscaffold24704:1252..1397 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:54376433..54376578 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:93195961..93196106 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:56550039..56550184 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:112364994..112365172 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:55661767..55661912 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:115383861..115384039 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:55758202..55758347 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:114276190..114276366 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:53036941..53037086 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:110169921..110170099 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:56157840..56157985 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt06chromosomeDt06:56155941..56156086 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At06chromosomeAt06:89872960..89873136 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14530supercontigscaffold14530:69824..70000 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13554supercontigscaffold13554:93513..93658 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13554supercontigscaffold13554:91614..91759 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:53037356..53037501 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:103858962..103859138 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:53249657..53249802 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:107073278..107073454 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:53578035..53578180 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:110082281..110082447 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:56533211..56533356 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:115100014..115100180 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:53574553..53574698 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:108376046..108376236 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:56470710..56470855 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:116461987..116462165 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:115450294..115450468 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:117626658..117626834 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_06chromosomeB_06:13515973..13516142 -Gossypium anomalum (B1) genome NSF_v1n/a
chr10chromosomechr10:40726655..40726800 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:36770537..36770682 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:54815548..54815693 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:29874430..29874575 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:35549709..35549854 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:15770326..15770485 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:88920849..88921021 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:22582881..22583039 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch06_At.06N/A4.3NAU874View
27235 x TM-1, F2:3 (2005)AD_ch06_At.06N/A15.1NAU874View
3PD6992 x SM3, F2:3 (2005)AD_ch06_At.06N/A0.4NAU874View
4TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch06_At.06N/A59.6NAU874View
5GX1135 x GX100-2, RIL (2016)AD_ch14_Dt.02N/A53.4NAU874View
6Yumian-1 x T586, RIL (2006)AD_ch06_At.06N/A17.5NAU0874View
7Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A63.2NAU0874View
8Yumian-1 x T586, RIL (2009)AD_ch06_At.06N/A11.74NAU0874/180tView
Sequence
>NAU0874 ID=NAU0874; Name=NAU0874; organism=Gossypium arboreum; type=genetic_marker; length=182bp
AAATGGCGTGCTTGAAATACATGATTAAACACTCAAAACAATGAAACAAA
ACAAGTATTATTAAAGTAAAAATACATATATATATATATATATATATATA
TATATATATATAAATTGCCTAATTAAGCTTTCAATTTTCTCACCGAGGCA
TGATCACGGCCTTGAGAGGGTTCTTCATCACA