NAU0874, NAU0874 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0874
AliasNAU874
NAU0874=NAU1093
NAU1093
Genbank IDBQ413236
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AT)18
PCR ConditionAnnealing temperature: 57
Primer 1NAU874_F: AAATGGCGTGCTTGAAATAC
Primer 2NAU874_R: TGTGATGAAGAACCCTCTCA
Product Length182
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ413236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:58059029..58059174 -
A06chromosomeA06:109823287..109823463 -
CM018220.1chromosomeCM018220.1:52862096..52862241 -
CM018207.1chromosomeCM018207.1:104997040..104997216 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:117986814..117986990 -
D10_06chromosomeD10_06:9966856..9967001 +
CM016619.1chromosomeCM016619.1:17035802..17035961 +
Dt_chr10chromosomeDt_chr10:50052998..50053143 -
At_chr10chromosomeAt_chr10:30360007..30360185 -
scaffold24704supercontigscaffold24704:1252..1397 +
D06chromosomeD06:54376433..54376578 -
A06chromosomeA06:93195961..93196106 -
Ghir_D06chromosomeGhir_D06:56550039..56550184 -
Ghir_A06chromosomeGhir_A06:112364994..112365172 -
D06chromosomeD06:55661767..55661912 -
A06chromosomeA06:115383861..115384039 -
D06chromosomeD06:55758202..55758347 -
A06chromosomeA06:114276190..114276366 -
D06chromosomeD06:53036941..53037086 -
A06chromosomeA06:110169921..110170099 -
Dt06chromosomeDt06:56157840..56157985 -
Dt06chromosomeDt06:56155941..56156086 -
At06chromosomeAt06:89872960..89873136 -
scaffold14530supercontigscaffold14530:69824..70000 -
scaffold13554supercontigscaffold13554:93513..93658 -
scaffold13554supercontigscaffold13554:91614..91759 -
Gbar_D06chromosomeGbar_D06:53037356..53037501 -
Gbar_A06chromosomeGbar_A06:103858962..103859138 -
D06chromosomeD06:53249657..53249802 -
A06chromosomeA06:107073278..107073454 -
CM017628.1chromosomeCM017628.1:53578035..53578180 -
CM017615.1chromosomeCM017615.1:110082281..110082447 -
CM017654.1chromosomeCM017654.1:56533211..56533356 -
CM017641.1chromosomeCM017641.1:115100014..115100180 -
CM017706.1chromosomeCM017706.1:53574553..53574698 -
CM017693.1chromosomeCM017693.1:108376046..108376236 -
D06chromosomeD06:56470710..56470855 -
A06chromosomeA06:116461987..116462165 -
Chr06chromosomeChr06:115450294..115450468 -
Chr06chromosomeChr06:117626658..117626834 -
B_06chromosomeB_06:13515973..13516142 -
chr10chromosomechr10:40726655..40726800 -
Chr_10chromosomeChr_10:36770537..36770682 -
Chr10chromosomeChr10:54815548..54815693 -
Chr10chromosomeChr10:29874430..29874575 -
Chr10chromosomeChr10:35549709..35549854 -
E06chromosomeE06:15770326..15770485 +
F06chromosomeF06:88920849..88921021 -
Chr06chromosomeChr06:22582881..22583039 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch06_At.06N/A4.3NAU874View
27235 x TM-1, F2:3 (2005)AD_ch06_At.06N/A15.1NAU874View
3PD6992 x SM3, F2:3 (2005)AD_ch06_At.06N/A0.4NAU874View
4TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch06_At.06N/A59.6NAU874View
5GX1135 x GX100-2, RIL (2016)AD_ch14_Dt.02N/A53.4NAU874View
6Yumian-1 x T586, RIL (2006)AD_ch06_At.06N/A17.5NAU0874View
7Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A63.2NAU0874View
8Yumian-1 x T586, RIL (2009)AD_ch06_At.06N/A11.74NAU0874/180tView
Sequence
>NAU0874 ID=NAU0874; Name=NAU0874; organism=Gossypium arboreum; type=genetic_marker; length=182bp
AAATGGCGTGCTTGAAATACATGATTAAACACTCAAAACAATGAAACAAA
ACAAGTATTATTAAAGTAAAAATACATATATATATATATATATATATATA
TATATATATATAAATTGCCTAATTAAGCTTTCAATTTTCTCACCGAGGCA
TGATCACGGCCTTGAGAGGGTTCTTCATCACA