NAU0874, NAU0874 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0874
AliasNAU874
NAU0874=NAU1093
NAU1093
Genbank IDBQ413236
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AT)18
PCR ConditionAnnealing temperature: 57
Primer 1NAU874_F: AAATGGCGTGCTTGAAATAC
Primer 2NAU874_R: TGTGATGAAGAACCCTCTCA
Product Length182
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Germplasm
Stock NameType
AKA 8400cultivar
AKA 8400cultivar
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ413236
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
NAU874_FNAU874_FGossypium arboreumprimer
NAU874_RNAU874_RGossypium arboreumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
NAU874NAU874Gossypium arboreummarker_locus
NAU0874NAU0874Gossypium arboreummarker_locus
NAU0874/180tNAU0874/180tGossypium arboreummarker_locus


Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Agricultural University of Nanjing
Address:Weigang 1#, Nanjing, Jiangsu 210095
Country:China
Email:cotton@njau.edu.cn
Phone:+86 25 84395307
Fax:+86 25 84395307
Keywords:Genetics and Breeding
Last update:18-Mar-2011
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:58059029..58059174 -
A06chromosomeA06:109823287..109823463 -
CM018220.1chromosomeCM018220.1:52862096..52862241 -
CM018207.1chromosomeCM018207.1:104997040..104997216 -
Chr8chromosomeChr8:123714128..123714306 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:117986814..117986990 -
D10_06chromosomeD10_06:9966856..9967001 +
CM016619.1chromosomeCM016619.1:17035802..17035961 +
Dt_chr10chromosomeDt_chr10:50052998..50053143 -
At_chr10chromosomeAt_chr10:30360007..30360185 -
scaffold24704supercontigscaffold24704:1252..1397 +
D06chromosomeD06:54376433..54376578 -
A06chromosomeA06:93195961..93196106 -
Ghir_D06chromosomeGhir_D06:56550039..56550184 -
Ghir_A06chromosomeGhir_A06:112364994..112365172 -
D06chromosomeD06:55661767..55661912 -
A06chromosomeA06:115383861..115384039 -
D06chromosomeD06:55758202..55758347 -
A06chromosomeA06:114276190..114276366 -
D06chromosomeD06:53036941..53037086 -
A06chromosomeA06:110169921..110170099 -
Dt06chromosomeDt06:56157840..56157985 -
Dt06chromosomeDt06:56155941..56156086 -
At06chromosomeAt06:89872960..89873136 -
scaffold14530supercontigscaffold14530:69824..70000 -
scaffold13554supercontigscaffold13554:93513..93658 -
scaffold13554supercontigscaffold13554:91614..91759 -
Gbar_D06chromosomeGbar_D06:53037356..53037501 -
Gbar_A06chromosomeGbar_A06:103858962..103859138 -
D06chromosomeD06:53249657..53249802 -
A06chromosomeA06:107073278..107073454 -
CM017628.1chromosomeCM017628.1:53578035..53578180 -
CM017615.1chromosomeCM017615.1:110082281..110082447 -
CM017654.1chromosomeCM017654.1:56533211..56533356 -
CM017641.1chromosomeCM017641.1:115100014..115100180 -
CM017706.1chromosomeCM017706.1:53574553..53574698 -
CM017693.1chromosomeCM017693.1:108376046..108376236 -
Sequence
>NAU0874 ID=NAU0874|Name=NAU0874|organism=Gossypium arboreum|type=genetic_marker|length=182bp
AAATGGCGTGCTTGAAATACATGATTAAACACTCAAAACAATGAAACAAA
ACAAGTATTATTAAAGTAAAAATACATATATATATATATATATATATATA
TATATATATATAAATTGCCTAATTAAGCTTTCAATTTTCTCACCGAGGCA
TGATCACGGCCTTGAGAGGGTTCTTCATCACA
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
17235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_A06N/AAD_chr.064.3NAU874
27235 x TM-1, F2:3 (2005)7T-F2:3_chr06N/AAD_chr.0615.1NAU874
3PD6992 x SM3, F2:3 (2005)PDSM-F2:3_chr06-1N/AAD_chr.060.4NAU874
4TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr06N/AAD_chr.0659.6NAU874
5GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr14N/AAD_chr.1453.4NAU874
6Yumian-1 x T586, RIL (2006)YT-RIL_chr06-3N/AAD_chr.0617.5NAU0874
7Yumian-1 x T586, RIL (2015)YT-RIL.15_chr06N/AAD_chr.0663.2NAU0874
8Yumian-1 x T586, RIL (2009)YT-RIL_chr06-2N/AAD_chr.0611.74NAU0874/180t