MUSB1135, MUSB1135 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1135
Genbank IDDX521167
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX521167
Source TypeEST
Repeat Motif(TCA)8
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1135_F: CCGCCGTCATTTCCATCACC
Primer 2MUSB1135_R: TGGTACGGATCATGGGAATCCT
Product Length149
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1135
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX521167
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D13chromosomeD13:63402860..63403008 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018227.1chromosomeCM018227.1:59035404..59035561 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018214.1chromosomeCM018214.1:107175085..107175226 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_13chromosomeD5_13:57800064..57800202 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
CM016626.1chromosomeCM016626.1:159352027..159352169 +Gossypium australe (G2) genome CRI_v1.1
At_chr4chromosomeAt_chr4:37568815..37568963 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr4chromosomeAt_chr4:37408546..37409302 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D13chromosomeD13:59192409..59192557 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D13chromosomeD13:59361274..59362030 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D13chromosomeGhir_D13:61947096..61947244 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_D13chromosomeGhir_D13:62273145..62273280 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A13chromosomeGhir_A13:107193000..107193135 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D13chromosomeD13:63143712..63143860 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D13chromosomeD13:62526551..62526699 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D13chromosomeD13:58784895..58785043 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At13chromosomeAt13:85736824..85736965 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold13110supercontigscaffold13110:186969..187110 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold7149supercontigscaffold7149:40879..41036 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold33728supercontigscaffold33728:9643..9778 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Scaffold3245supercontigScaffold3245:37958..38093 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D13chromosomeGbar_D13:58956290..58956447 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A13chromosomeGbar_A13:108178638..108178779 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D13chromosomeD13:59927592..59927749 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A13chromosomeA13:111903111..111903252 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017635.1chromosomeCM017635.1:59961844..59962012 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017635.1chromosomeCM017635.1:60081905..60082677 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017713.1chromosomeCM017713.1:59679022..59679178 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017700.1chromosomeCM017700.1:109331569..109331710 +Gossypium darwinii (AD5) genome HGS_v1.1
D13chromosomeD13:63701830..63701978 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr13chromosomeChr13:57774990..57775128 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr13chromosomeChr13:59131561..59131699 +Gossypium thurberi (D1-5) genome CRI_v1
chr13chromosomechr13:44296255..44296685 +Gossypium armourianum (D2-1) genome ISU_v1
Chr13chromosomeChr13:62041172..62041310 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr13chromosomeChr13:41776780..41777035 +Gossypium aridum (D4) genome ISU_v1
Chr13chromosomeChr13:32296607..32296745 +Gossypium gossypioides (D6) genome ISU_v1
Chr13chromosomeChr13:40693751..40693892 +Gossypium lobatum (D7) genome ISU_v1
E13chromosomeE13:114164952..114165093 +Gossypium stocksii (E1) genome NSF_v1
E13chromosomeE13:114559505..114559643 +Gossypium stocksii (E1) genome NSF_v1
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX521167DX521167Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A18.06MUSB1135bView
2TM-1 x 3-79, RIL (2006)AD_ch18_Dt.13N/A7.6MUSB1135bView
3TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A97.79MUSB1135bView
4TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A106.6MUSB1135bView
5Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A5.96MUSB1135aView
6TM-1 x 3-79, RIL (2006)AD_ch18_Dt.13N/A6.8MUSB1135aView
7TM-1 x 3-79, RIL (2006)AD_ch18_Dt.13N/A21.3MUSB1135cView
8TM-1 x 3-79, RIL (2006)AD_ch18_Dt.13N/A44.7MUSB1135dView
9Li2 x DP5690, F2 (2011)AD_ch18_Dt.13N/A1.53MUSB1135View
10DH962 x Jinmian-6, F2 (2009)AD_ch18_Dt.13N/A5.3MUSB1135View
11DH962 x Jinmian-6, F2 (2009)AD_ch18_Dt.13N/A5.3MUSB1135View
12DH962 X Ji Mian 5, F2 (2015)AD_ch18_Dt.13N/A29.54MUSB1135View
13DH962 x Ji Mian 5, RIL (2015)AD_ch18_Dt.13N/A0MUSB1135View
14CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A11.2MUSB1135View
15CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch18_Dt.13N/A121.2MUSB1135View
16TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A106.6MUSB1135bView
17PD 94042 x (AD)4-08, F2 (2016)AD_ch18_Dt.13N/A82.9MUSB1135View
18MGG-293-793, MAGIC (2018)AD_ch13_At.13N/A189.5MUSB1135bView
19MGG-293-793, MAGIC (2018)AD_ch18_Dt.13N/A140MUSB1135aView
Sequence
>MUSB1135 ID=MUSB1135; Name=MUSB1135; organism=Gossypium hirsutum; type=genetic_marker; length=149bp
CCGCCGTCATTTCCATCACCGTCATCAAATTTCAATATGGATACAATCTC
ATCATCATCATCATCATCATCATTGTCATCCAATGTTATGGTAAACCCTA
AAATCATGGACAGCATCGCGGTGGTGAAGGATTCCCATGATCCGTACCA