JESPR0007, JESPR0007 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0007
AliasJESPR007
Genbank IDAF351249
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351249.1
Source Typegenomic
Repeat Motif(GAA)14
Primer 1JESPR0007_F: GCTGACGGAAGTGACAGGACCCT
Primer 2JESPR0007_R: GTCTCCTTCCCCTTCCTCTTCTTC
PolymorphismP_ JESPR0007
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351249
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D12chromosomeD12:45897969..45898160 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
D10chromosomeD10:43657472..43657660 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
D04chromosomeD04:12637655..12637898 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018224.1chromosomeCM018224.1:41055780..41055968 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018226.1chromosomeCM018226.1:42733971..42734162 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018218.1chromosomeCM018218.1:11767359..11767602 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Dt_chr11chromosomeDt_chr11:35066707..35066895 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr7chromosomeAt_chr7:12497992..12498235 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold35919supercontigscaffold35919:570..813 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D10chromosomeD10:41741925..41742113 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D12chromosomeGhir_D12:45135780..45135971 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_D10chromosomeGhir_D10:44564801..44564989 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_D04chromosomeGhir_D04:12388600..12388843 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D12chromosomeD12:44274737..44274928 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D10chromosomeD10:44435547..44435735 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D04chromosomeD04:12055640..12055883 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D10chromosomeD10:43648248..43648436 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D04chromosomeD04:12290549..12290792 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D12chromosomeD12:42962473..42962664 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
D10chromosomeD10:42183910..42184098 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
D04chromosomeD04:11704584..11704827 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt12chromosomeDt12:44075323..44075514 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Dt10chromosomeDt10:43540998..43541186 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Dt10chromosomeDt10:25142598..25142782 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Dt09chromosomeDt09:51999616..51999780 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold8237supercontigscaffold8237:106062..106250 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold6454supercontigscaffold6454:292341..292505 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold611supercontigscaffold611:731441..731625 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold21856supercontigscaffold21856:10141..10332 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11668supercontigscaffold11668:9988..10231 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D10chromosomeGbar_D10:40698167..40698355 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D12chromosomeGbar_D12:41995052..41995243 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D10chromosomeGbar_D10:22732092..22732276 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D09chromosomeGbar_D09:49812159..49812323 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D07chromosomeGbar_D07:5663846..5664087 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D04chromosomeGbar_D04:11835935..11836178 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D12chromosomeD12:43246113..43246304 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
D10chromosomeD10:43442094..43442282 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
D07chromosomeD07:5573363..5573604 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
D04chromosomeD04:11768845..11769088 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017632.1chromosomeCM017632.1:41006583..41006771 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017634.1chromosomeCM017634.1:43183111..43183302 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017626.1chromosomeCM017626.1:11867850..11868090 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017658.1chromosomeCM017658.1:42756923..42757111 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017660.1chromosomeCM017660.1:45548144..45548337 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017655.1chromosomeCM017655.1:5758520..5758751 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017652.1chromosomeCM017652.1:12192012..12192255 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017710.1chromosomeCM017710.1:42122283..42122471 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017712.1chromosomeCM017712.1:43801620..43801811 -Gossypium darwinii (AD5) genome HGS_v1.1
D10chromosomeD10:42962164..42962352 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
D12chromosomeD12:45085039..45085230 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
D04chromosomeD04:12764104..12764347 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr12chromosomeChr12:11899956..11900166 -Gossypium davidsonii (D3d-8) genome CRI_v1
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351249.1AF351249.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch16_Dt.07N/A12JESPR7-D288View
2TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A37.89JESPR007aView
3TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A39.2JESPR007aView
4Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A81JESPR007aView
5TM-1 x 3-79, RIL (2012)AD_ch20_Dt.10N/A54.59JESPR007bView
6TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A55JESPR007bView
7Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A61JESPR007bView
8Yumian-1 x T586, RIL (2015)AD_ch16_Dt.07N/A26.2JESPR007View
9W10 x TM-1, F2:3 (2015)AD_ch16_Dt.07N/A32.5JESPR7View
10TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A39.24JESPR007aView
11TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A54.99JESPR007bView
Sequence
>JESPR0007 ID=JESPR0007; Name=JESPR0007; organism=Gossypium hirsutum; type=genetic_marker; length=190bp
GCTGACGGAAGTGACAGGACCCTGGTCGAGGGTTTGCCACAGGCGGCACC
CCAGCCCGTATCTTTTGTCTTTCTTTGTCTTTGGGACCATTATAATGGTC
CCCCAAAGTGGAAAAATGAAGCATTANGAAAGAAGAATGAGAGAAGAAGA
AAAGAAGAAGAGAAGAGAAGAAGAGGAAGGGGAAGGAGAC