DPL0897, DPL0897 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	DPL0897
Genbank ID	GQ395228
Type	SSR
Species	Gossypium hirsutum
Germplasm	Delta Opal
Source Sequence	GQ395228
Source Type	genomic
PCR Condition	Annealing temperature: 55
Primer 1	DPL0897_F: ATCGTACCCAATGGAGGATG
Primer 2	DPL0897_R: GCTTTCTTTCAGCTCCCTATTT
Polymorphism	P_ DPL0897
Publication	[view all]
Contact	Monsanto
Comment	Primer data obtained in 2009-05

Contact

Name

Details

Monsanto

Country:

United States

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	GQ395228

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D07	chromosome	D07:43228851..43229037 -
CM018221.1	chromosome	CM018221.1:42205661..42205838 -
Dt_chr1	chromosome	Dt_chr1:72563197..72563383 -
D07	chromosome	D07:40917280..40917451 -
Ghir_D07	chromosome	Ghir_D07:45114434..45114620 -
D07	chromosome	D07:44441367..44441553 -
D07	chromosome	D07:44473297..44473477 -
D07	chromosome	D07:41142844..41143029 -
Gbar_D07	chromosome	Gbar_D07:42685395..42685572 -
D07	chromosome	D07:43403831..43404008 -
CM017629.1	chromosome	CM017629.1:42736409..42736559 -
CM017655.1	chromosome	CM017655.1:43597636..43597801 -
CM017707.1	chromosome	CM017707.1:43160312..43160480 -
D07	chromosome	D07:44993251..44993437 -
Chr01	chromosome	DPL0897:1..830 . Chr01:38246007..38246806 -
Chr7	chromosome	DPL0897:1..830 . Chr7:19656221..19657020 -

Publications


Year	Publication
2009	Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG. New SSR Markers for Use in Cotton (Gossypium spp.) Improvement. Journal of cotton science. 2009; 13(2):75-157

Germplasm


Stock Name	Type
Delta Opal	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
GQ395228	GQ395228	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Yumian-1 x T586, RIL (2015)	AD_ch16_Dt.07	N/A	85.5	DPL0897	View
2	TM-1 x 3-79, RIL (2014)	AD_ch16_Dt.07	N/A	38.3	DPL0897	View
3	TM-1 x (TX-0256 + TX-1046), CSIL (2016)	AD_ch16_Dt.07	N/A	52.9	DPL0897	View
4	GX1135 x GX100-2, RIL (2016)	AD_ch16_Dt.07	N/A	30.3	DPL0897	View
5	GX1135 x VGX100-2, RIL (2016)	AD_ch16_Dt.07	N/A	0	DPL0897	View
6	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch16_Dt.07	N/A	61.9	DPL0897	View
7	CCRI-35 x Yumian-1, RIL (2015)	AD_ch16_Dt.07	N/A	151.6	DPL0897	View
8	LMY28 x XLZ24, RIL (2018)	AD_ch16_Dt.07	N/A	19.09	DPL0897	View
9	Monsanto SSR Bin Map, (2009)	AD_ch16_Dt.07	N/A	121	DPL0897	View
10	CCRI-35 x Yumian-1, RIL (2017)	AD_ch16_Dt.07	N/A	108.31	DPL0897	View
11	TM-1 x 3-79, RIL (2012.v3)	AD_ch16_Dt.07	N/A	38.34	DPL0897	View
12	TM-1 x Hai-7124, BC1 (2012)	AD_ch17_Dt.03	N/A	68.7	dPL0897-3000	View
13	TM-1 x Hai-7124, BC1 (2012)	AD_ch16_Dt.07	N/A	49.3	dPL0897-170	View

Sequence

>DPL0897 ID=DPL0897; Name=DPL0897; organism=Gossypium hirsutum; type=genetic_marker; length=163bp
ATCGTACCCAATGGAGGATGGAACAAATTATGAAAACCTCTTTACAATAA
TAAGTCTAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTTAATCCCTATAGTACAATGAACAATAAAATAGGGA
GCTGAAAGAAAGC

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DPL0897, DPL0897 (genetic_marker) Gossypium hirsutum