DPL0387, DPL0387 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0387
AliasDPL387
Genbank IDGQ394978
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Delta Opal
Source SequenceGQ394978
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0387_F: TCGCAACAGAAACAACAAAGC
Primer 2DPL0387_R: CTTCGTGGTTTCATCCTTCTCTAT
PolymorphismP_ DPL0387
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394978
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:12043982..12044161 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:16127624..16127790 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:11017074..11017253 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:15369481..15369647 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018220.1chromosomeCM018220.1:13742705..13742884 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:11041279..11041474 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:11371329..11371495 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:49109762..49109938 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:125786541..125786704 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:19651525..19651704 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:75024783..75024949 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:11209537..11209716 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:14951354..14951520 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:11783431..11783610 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:16403263..16403429 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:11419761..11419940 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:15724785..15724951 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:11768171..11768350 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:16284988..16285154 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:11278892..11279068 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:15703084..15703250 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:10399509..10399688 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At06chromosomeAt06:13704062..13704228 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4215supercontigscaffold4215:296390..296569 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3734supercontigscaffold3734:133897..134063 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:11168569..11168748 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:15293765..15293931 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D06chromosomeGbar_D06:13894798..13894977 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:10976620..10976799 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:15351770..15351936 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D06chromosomeD06:13667550..13667729 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:11699132..11699320 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:16235372..16235538 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:11391572..11391751 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:15732848..15733014 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:11216341..11216520 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:15664227..15664393 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:11939968..11940147 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:16443275..16443441 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:16060525..16060691 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:16773364..16773530 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:10827968..10828162 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:81938863..81939027 -Gossypium anomalum (B1) genome NSF_v1n/a
chr10chromosomechr10:9771943..9772110 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr10chromosomeChr10:11662634..11662810 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10_6048057chromosomeChr10_6048057:17936..18118 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:8497739..8497909 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:98371788..98371939 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr10chromosomeDPL0387:5..307 .
Chr10:10923361..10923691 +		n/a
Chr10chromosomeDPL0387:5..307 .
Chr10:11587303..11587633 -		n/a
Germplasm
Stock NameType
Delta Opalaccession
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394978GQ394978Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch25_Dt.06N/A35.8DPL0387View
20-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A59.39DPL0387View
30-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A123.4DPL0387View
4W10 x TM-1, F2:3 (2015)AD_ch25_Dt.06N/A28.9MON-DPL0387View
Sequence
>DPL0387 ID=DPL0387; Name=DPL0387; organism=Gossypium hirsutum; type=genetic_marker; length=167bp
TCGCAACAGAAACAACAAAGCAAAGTTTTCTTTTTTAAAGTTCTGGTGTA
GATTATGTATAGTTGTAATATATCCAGTTGAGACTTTCTTATACTTAGAG
AAAATATTGTAGTAGTAGTAGTAGTAGAGTTAGCTGAAGCAATATAGAGA
AGGATGAAACCACGAAG