DPL0319, DPL0319 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0319
Genbank IDGQ394950
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394950
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0319_F: TTCCTCTTCTCTGATTTAACCACC
Primer 2DPL0319_R: AAGATAAGGAAGTGAAACGTGAGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394950
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:3341370..3341568 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:3385312..3385504 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:3127861..3128065 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:3279006..3279219 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:59416022..59416220 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:126018903..126019101 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:61014628..61014823 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:4301735..4301918 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:24621496..24621694 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1418.1supercontigscaffold1418.1:6017..6218 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:3051168..3051366 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:3229744..3229936 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:3553715..3553913 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:3059895..3060087 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:3230994..3231192 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:3289832..3290024 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:3342447..3342645 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:2666819..2667020 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:3401394..3401598 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:3487587..3487779 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold20093supercontigscaffold20093:14254..14467 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21803supercontigscaffold21803:55575..55779 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:3194655..3194859 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:3415875..3416088 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:3242075..3242279 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:3357890..3358103 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:3235344..3235548 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:3458888..3459092 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:3293303..3293507 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:3547939..3548131 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:3248426..3248630 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:3392708..3392921 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:3344059..3344257 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:3472392..3472584 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:3298691..3298889 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:3318563..3318761 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:2971195..2971393 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:98608284..98608479 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:2967033..2967231 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:3053155..3054180 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:2555334..2555666 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:3204382..3204580 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:2533674..2533863 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:2368025..2368217 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:3170345..3170528 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:110054320..110054533 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:3106867..3107062 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:165634911..165635103 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394950GQ394950Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A9DPL0319View
2Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A34.2DPL0319View
3GX1135 x GX100-2, RIL (2016)AD_ch20_Dt.10N/A133.8DPL0319View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch10_At.10N/A136.1DPL0319View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A136.5DPL0319View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch10_At.10N/A22.9DPL0319View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A25.22DPL0319View
Sequence
>DPL0319 ID=DPL0319; Name=DPL0319; organism=Gossypium hirsutum; type=genetic_marker; length=193bp
TTCCTCTTCTCTGATTTAACCACCACCCTTCCTCCCATGAAAAACACAGC
GGCCGTAGCAACGGCGGCTGCTCCCACTGCTGAAATTACTGAACCCCAAT
TGATCTTACTTGTATTACTCTCATCATCATCATCATCATCATCATCTTCT
TGTTGTACTTGTTCTTGTTCCTCACGTTTCACTTCCTTATCTT