DC40310, DC40310 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40310
Genbank IDGQ394740
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1763
Source Typegenomic
Primer 1DC40310_F: CTTCTCGCCGGTATCTCT
Primer 2DC40310_R: CCTATGGGTTTTCGTTCC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394740
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:334883..335116 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:250311..250540 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_13chromosomeKI_13:15615973..15616209 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:294414..294675 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1263.1supercontigscaffold1263.1:247692..247922 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:56327361..56327594 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:167202..167435 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:98103..98728 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:331505..331738 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:358494..358727 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:182131..182364 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At13chromosomeAt13:109039..109268 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At13chromosomeAt13:106080..106310 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20501supercontigscaffold20501:291066..291298 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18152supercontigscaffold18152:109039..109268 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18152supercontigscaffold18152:106080..106310 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:280165..280394 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:257714..257945 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:261116..261345 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:294368..294598 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:282656..282901 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:73086..73316 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:329761..329994 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:281557..281828 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:280699..280960 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:766401..766636 -Gossypium anomalum (B1) genome NSF_v1n/a
chr13chromosomechr13:267218..268316 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:277721..277957 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:286588..286833 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:214010..214237 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:207256..207738 -Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:385848..386095 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:302034..302307 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1763MONCS1763Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A1.2DC40310View
2Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A0DC40310View
3W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A139.3DC40310View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch13_At.13N/A20DC40310View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch13_At.13N/A2.01DC40310View
Sequence
>DC40310 ID=DC40310; Name=DC40310; organism=Gossypium hirsutum; type=genetic_marker; length=234bp
CTTCTCGCCGGTATCTCTCTCTCTCTCTCTCTCTCTCTGCTATTTAAAAA
AAGAAAAAGAAAAAAATAAAATTGCTGCTATGAATGTTAAGGGTCTTTGA
TTAAGAGCTATTTTGGGTGAGTTTTTCCTAGCGAATTGAGCTAATATGAG
TTGCAATTAAGGTTTTTGGGGGTCAAGGCTTAGTTAGTTTCTATTATTTA
ATAAAATTTGAAGAAGGGAACGAAAACCCATAGG