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Marker Overview
Name | CIR0222 |
Alias | CIR222
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Genbank ID | AJ567168 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567168
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Source Type | genomic |
Repeat Motif | (GT)14 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR222_F: TCATCAACAATCCTTCC |
Primer 2 | CIR222_R: TACTGTCCCTCTTGCAT |
Product Length | 291 |
Polymorphism | P_ CIR0222 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch19_Dt.05 | N/A | 26.9 | CIR222 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch19_Dt.05 | N/A | 156.97 | CIR222 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch04_At.04 | N/A | 56.94 | CIR222 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch04_At.04 | N/A | 45.26 | CIR222 | View |
5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch19_Dt.05 | N/A | 52.97 | CIR222 | View |
6 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch19_Dt.05 | N/A | 49 | CIR222 | View |
7 | TM-1 x 3-79, RIL (2012) | AD_ch19_Dt.05 | N/A | 134.97 | CIR222 | View |
8 | Emian-22 x 3-79, BC1 (2011) | AD_ch04_At.04 | N/A | 100 | CIR222 | View |
9 | TM-1 x 3-79, RIL (2014) | AD_ch19_Dt.05 | N/A | 51.4 | CIR222 | View |
10 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch04_At.04 | N/A | 116.5 | CIR222b | View |
11 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch19_Dt.05 | N/A | 210.5 | CIR222a | View |
12 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 290 | cir0222 | View |
13 | AD-genome wide Reference Map (2009) | AD_ch04_At.04 | N/A | 138 | cir0222 | View |
14 | TM-1 x 3-79, RIL (2012.v3) | AD_ch19_Dt.05 | N/A | 51.37 | CIR222 | View |
15 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch04_At.04 | N/A | 42 | CIR222a | View |
16 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch19_Dt.05 | N/A | 199 | CIR222b | View |
Sequence
>CIR0222 ID=CIR0222; Name=CIR0222; organism=Gossypium hirsutum; type=genetic_marker; length=291bp TCATCAACAATCCTTCCCCTGTGCCGTGTAAAGAGCAAGAACATATATGA TGTTTTCCATTGTCAAGAACTAAATTTGAAAAAGGNAAGGTCAAAAGTTT TACCTCTCAAGAACAAACTTTCCTTCTTGTACTTTTGACTCTTCTCGTAT GCTGNCTCCTGGCCGACAAAGATGGAAAATTTAGCAAAGGTTCACAATCT TCAGAACTCGACTTTGCTGAATAAAGGTGAGTGTGTGTGTGTGTGTGTGT GTGTGTGTGCGTGTGCGCGCGCGCATGCAAGAGGGACAGTA
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