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Marker Overview
Name | CIR0202 |
Alias | CIR202
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Genbank ID | AJ567148 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567148
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Source Type | genomic |
Repeat Motif | (AC)9 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR202_F: TGAAAGTTGAAAGTGTGG |
Primer 2 | CIR202_R: ACGCTTTAGTTGCAGAG |
Product Length | 179 |
Polymorphism | P_ CIR0202 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch03_At.03 | N/A | 133.2 | CIR202 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch03_At.03 | N/A | 152.2 | CIR202 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch14_Dt.02 | N/A | 111.86 | CIR202 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch03_At.03 | N/A | 116.54 | CIR202 | View |
5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch14_Dt.02 | N/A | 72.07 | CIR202 | View |
6 | TM-1 x 3-79, RIL (2012) | AD_ch14_Dt.02 | N/A | 2.54 | CIR202 | View |
7 | Emian-22 x 3-79, BC1 (2011) | AD_ch03_At.03 | N/A | 154.39 | CIR202 | View |
8 | TM-1 x 3-79, RIL (2014) | AD_ch14_Dt.02 | N/A | 123.9 | CIR202 | View |
9 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch17_Dt.03 | N/A | 92 | CIR202 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 195 | cir0202 | View |
11 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch14_Dt.02 | N/A | 142.7 | CIR202 | View |
12 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch14_Dt.02 | N/A | 82.88 | CIR0202 | View |
13 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch14_Dt.02 | N/A | 92.41 | CIR0202 | View |
14 | TM-1 x 3-79, RIL (2012.v3) | AD_ch14_Dt.02 | N/A | 123.88 | CIR202 | View |
Sequence
>CIR0202 ID=CIR0202; Name=CIR0202; organism=Gossypium hirsutum; type=genetic_marker; length=179bp TGAAAGTTGAAAGTGTGGGGCGCAAAGCGCAATTGACCTCGATTATATCT TCTTAATTTACAGAGAAGTCCTTTAACTACATATAAATTGACAGCAAAAT TATTTCTGACCAGAAAAATAAACACACACACACACACACAAAAAAAAAAG GGACGCTGGAATCTCTGCAACTAAAGCGT
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