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Marker Overview
Name | CIR0084 |
Alias | CIR84 CIR084
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Genbank ID | AJ567033 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567033
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Source Type | genomic |
Repeat Motif | (CA)8(TA)7 |
PCR Condition | Annealing temperature: 51 |
Primer 1 | CIR084_F: GAAATTGGTGATACAAGTG |
Primer 2 | CIR084_R: TGTCTGTTTATCTCCTTTG |
Product Length | 117 |
Polymorphism | P_ CIR0084 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch14_Dt.02 | N/A | 159.4 | CIR084 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch14_Dt.02 | N/A | 104.07 | CIR084 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch03_At.03 | N/A | 98.13 | CIR084 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch14_Dt.02 | N/A | 86.53 | CIR084 | View |
5 | TM-1 x 3-79, RIL (2012) | AD_ch14_Dt.02 | N/A | 19.33 | CIR084 | View |
6 | TM-1 x 3-79, RIL (2014) | AD_ch14_Dt.02 | N/A | 107.1 | CIR084 | View |
7 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch03_At.03 | N/A | 128 | CIR084b | View |
8 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch14_Dt.02 | N/A | 160.6 | CIR084a | View |
9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch14_Dt.02 | N/A | 55.4 | CIR084* | View |
10 | AD-genome wide Reference Map (2009) | AD_ch14_Dt.02 | N/A | 188 | cir0084 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 186 | cir0084 | View |
12 | TM-1 x 3-79, RIL (2012.v3) | AD_ch14_Dt.02 | N/A | 107.09 | CIR084 | View |
13 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch14_Dt.02 | N/A | 26.1 | CIR084 | View |
Sequence
>CIR0084 ID=CIR0084; Name=CIR0084; organism=Gossypium hirsutum; type=genetic_marker; length=117bp GAAATTGGTGATACAAGTGTATCCACACACACACACACATATATATATAT ATAAGGATATAAACAAACAGACATGCATTACTATTCCATTGAAAGATACA AAGGAGATAAACAGACA
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