CIR0084, CIR0084 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0084
AliasCIR84
CIR084
Genbank IDAJ567033
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567033
Source Typegenomic
Repeat Motif(CA)8(TA)7
PCR ConditionAnnealing temperature: 51
Primer 1CIR084_F: GAAATTGGTGATACAAGTG
Primer 2CIR084_R: TGTCTGTTTATCTCCTTTG
Product Length117
PolymorphismP_ CIR0084
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567033
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:68957803..68957918 -
CM018216.1chromosomeCM018216.1:65149260..65149377 -
D5_03chromosomeD5_03:1737285..1737400 +
D10_03chromosomeD10_03:1654128..1654238 +
CM016616.1chromosomeCM016616.1:2531210..2531323 +
Dt_chr5chromosomeDt_chr5:9089106..9089221 -
D02chromosomeD02:65551795..65551910 -
Ghir_D02chromosomeGhir_D02:68020734..68020849 -
Ghir_A03chromosomeGhir_A03:111127806..111127909 -
D02chromosomeD02:68043996..68044111 -
D02chromosomeD02:69354356..69354471 -
D02chromosomeD02:66451846..66451961 -
Dt02chromosomeDt02:69034919..69035036 -
Dt02chromosomeDt02:69033014..69033131 -
scaffold20579supercontigscaffold20579:86280..86397 -
scaffold20579supercontigscaffold20579:84375..84492 -
scaffold15818supercontigscaffold15818:2264..2365 -
Gbar_D02chromosomeGbar_D02:65893504..65893621 -
Gbar_A03chromosomeGbar_A03:103375112..103375213 -
D02chromosomeD02:67093987..67094104 -
CM017624.1chromosomeCM017624.1:68127117..68127230 -
CM017650.1chromosomeCM017650.1:69772673..69772794 -
CM017702.1chromosomeCM017702.1:66699190..66699301 -
D02chromosomeD02:70437871..70437986 -
Chr03chromosomeChr03:61340224..61340339 -
B_03chromosomeB_03:1964107..1964218 +
Chr05chromosomeChr05:64366136..64366241 -
chr05chromosomechr05:48926284..48926393 -
Chr_05chromosomeChr_05:42128341..42128442 -
Chr05chromosomeChr05:65843643..65843765 -
Chr05chromosomeChr05:36286110..36286213 -
E03chromosomeE03:123738128..123738235 -
F03chromosomeF03:108508174..108508281 -
Chr05chromosomeCIR0084:1..192 .
Chr05:62421552..62421749 -
Chr5chromosomeCIR0084:1..192 .
Chr5:41328249..41328446 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567033AJ567033Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch14_Dt.02N/A159.4CIR084View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A104.07CIR084View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A98.13CIR084View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A86.53CIR084View
5TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A19.33CIR084View
6TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A107.1CIR084View
7Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A128CIR084bView
8Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch14_Dt.02N/A160.6CIR084aView
9Handan-208 x Pima-90, F2:3 (2007)AD_ch14_Dt.02N/A55.4CIR084*View
10AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A188cir0084View
11AD-genome wide Reference Map (2009)AD_ch03_At.03N/A186cir0084View
12TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A107.09CIR084View
13PD 94042 x (AD)4-08, F2 (2016)AD_ch14_Dt.02N/A26.1CIR084View
Sequence
>CIR0084 ID=CIR0084; Name=CIR0084; organism=Gossypium hirsutum; type=genetic_marker; length=117bp
GAAATTGGTGATACAAGTGTATCCACACACACACACACATATATATATAT
ATAAGGATATAAACAAACAGACATGCATTACTATTCCATTGAAAGATACA
AAGGAGATAAACAGACA