CGR6356, CGR6356 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6356
Genbank IDGQ394029
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0994
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6356_F: ACCCACCACAGATCTGCAA
Primer 2CGR6356_R: CAGATCACATCCTACTTCGTCAA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394029
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:93986052..93986195 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:103185837..103185971 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:88780754..88780889 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold39.1supercontigscaffold39.1:2532544..2532678 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:90052949..90053092 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:55369309..55369423 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:107580709..107580852 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:108247547..108247690 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:105831082..105831216 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:102732836..102732979 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6563supercontigscaffold6563:109131..109246 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2537supercontigscaffold2537:428259..428393 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:55334890..55335005 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:105678475..105678609 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:105718973..105719108 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:104303974..104304109 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:111575256..111575388 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:101851782..101851908 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:109311522..109311665 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:112603829..112603956 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:10581944..10582079 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr02chromosomechr02:40833273..40833674 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:36533234..36533454 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0994MONCS0994Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A58.8CGR6356View
2W10 x TM-1, F2:3 (2015)AD_ch01_At.01N/A31.2CGR6356View
3GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A56.4CGR6356View
4Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A61CGR6356View
5TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A54cgr6356-150View
Sequence
>CGR6356 ID=CGR6356; Name=CGR6356; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
ACCCACCACAGATCTGCAAAAAATGAAAAAAGATAAAAATTTGTAAACAA
ACCCAGATTAAAAAGAACAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGATTTTGAAGAAAATTTTGACGAAGTAGGATGTGATCTG