CGR5537, CGR5537 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5537
Genbank IDGQ393542
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0507
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5537_F: GCAATGGTGAGTTGGGAAGT
Primer 2CGR5537_R: CATATTAGCCCATTGGGTGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393542
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A08chromosomeA08:72365220..72365370 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018209.1chromosomeCM018209.1:66685661..66685829 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:74620022..74620164 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
CM016621.1chromosomeCM016621.1:68438443..68438636 -Gossypium australe (G2) genome CRI_v1.1
A08chromosomeA08:56506508..56506658 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:68981201..68981355 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:72060034..72060184 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:71456176..71456326 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
At08chromosomeAt08:58058210..58058378 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold8316supercontigscaffold8316:76780..76948 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A08chromosomeGbar_A08:67931509..67931675 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:68236442..68236602 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:62763609..62763769 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017695.1chromosomeCM017695.1:68165226..68165382 +Gossypium darwinii (AD5) genome HGS_v1.1
A08chromosomeA08:72563144..72563294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:70767295..70767451 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:75113759..75113903 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_08chromosomeB_08:57721785..57721939 +Gossypium anomalum (B1) genome NSF_v1
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0507MONCS0507Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A51.5CGR5537View
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch24_Dt.08N/A25.5CGR5537View
3W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A28.9CGR5537View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A59.2CGR5537View
5Monsanto SSR Bin Map, (2009)AD_ch08_At.08N/A101CGR5537View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A20.6MON_CGR5537View
7DH962 X Ji Mian 5, F2 (2015)AD_ch08_At.08N/A54.45MON_CGR5537View
8DH962 x Ji Mian 5, RIL (2015)AD_ch08_At.08N/A31.4MON_CGR5537View
9MGG-293-793, MAGIC (2018)AD_ch08_At.08N/A71.3CGR5537View
Sequence
>CGR5537 ID=CGR5537; Name=CGR5537; organism=Gossypium hirsutum; type=genetic_marker; length=155bp
GCAATGGTGAGTTGGGAAGTGACAGCCAAGGGCTTTAAAAGAGAGTAAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAATAGGGAAGGATTATTGGGAGTTT
GGAAAAGACAACAAAAAGAAAGTTCCATGTGTCAAGCACCCAATGGGCTA
ATATG