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Marker Overview
Name | BNL3995 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3995_orig
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Source Type | genomic |
Repeat Motif | (AC)16 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3995_F: ATATTTTATTCTTTTAATAGCTTTATTCCC |
Primer 2 | BNL3995_R: TTGGAAAAACCCATGGTGAT |
Polymorphism | P_ BNL3995 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | 3-79 x NM24016, RIL (2008) | AD_ch05_At.05 | N/A | 0 | BNL3995 | View |
2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch05_At.05 | N/A | 74.2 | BNL3995 | View |
3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch05_At.05 | N/A | 258.5 | BNL3995 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch05_At.05 | N/A | 95.25 | BNL3995 | View |
5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch05_At.05 | N/A | 78.74 | BNL3995 | View |
6 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch05_At.05 | N/A | 208.8 | BNL3995 | View |
7 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 227 | BNL3995 | View |
8 | TM-1 x 3-79, RIL (2006) | AD_ch05_At.05 | N/A | 23.7 | BNL3995 | View |
9 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 130.17 | BNL3995 | View |
10 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 67.6 | BNL3995 | View |
11 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 187.5 | BNL3995 | View |
12 | Monsanto SSR Bin Map, (2009) | AD_ch05_At.05 | N/A | 41 | BNL3995 | View |
13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 154.1 | BNL3995-210 | View |
14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 143.49 | BNL3995-210 | View |
15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 63.3 | BNL3995-210 | View |
16 | SG 747 x Giza 75, BIL (2013) | AD_ch05_At.05 | N/A | 137 | BNL3995b | View |
17 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 67.56 | BNL3995 | View |
18 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch05_At.05 | N/A | 200.6 | BNL3995 | View |
Sequence
>BNL3995 ID=BNL3995; Name=BNL3995; organism=Gossypium hirsutum; type=genetic_marker; length=198bp ATATTTTATTCTTTTAATAGCTTTATTCCCACTTATTAACTACTGCTACA CACACACACACACACACACACACACACACATAGTATTCCCCAATAGTTTA CACTTAGGACTAACACAAACTTAGCTCCAGAATATATAACCATGCTTATT TATATCTATATTTCTTTCACTTTGTCAGATCACCATGGGTTTTTCCAA
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