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Marker Overview
| Name | BNL0686 |
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| Alias | BNL686
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL0686_orig
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| Source Type | genomic |
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| Repeat Motif | (GA)22 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL0686_F: ATTTTTCCCTTGGTGGTCCT |
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| Primer 2 | BNL0686_R: ACATGATAGAAATATAAACCAAACACG |
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| Polymorphism | P_ BNL0686 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch23_Dt.09 | N/A | 178.9 | BNL686a | View |
| 2 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch09_At.09 | N/A | 0 | BNL686a | View |
| 3 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch09_At.09 | N/A | 9.9 | BNL686a | View |
| 4 | Emian-22 x 3-79, BC1 (2011) | AD_ch23_Dt.09 | N/A | 17.15 | BNL686 | View |
| 5 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch23_Dt.09 | N/A | 24.2 | BNL686 | View |
| 6 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch09_At.09 | N/A | 0 | BNL686 | View |
| 7 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch23_Dt.09 | N/A | 23.8 | BNL686 | View |
| 8 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch23_Dt.09 | N/A | 3.1 | BNL686 | View |
| 9 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch23_Dt.09 | N/A | 51.3 | BNL686b | View |
| 10 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch23_Dt.09 | N/A | 5.2 | BNL686b | View |
| 11 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch09_At.09 | N/A | 0 | BNL686b | View |
| 12 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch09_At.09 | N/A | 19.5 | BNL0686 | View |
| 13 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch23_Dt.09 | N/A | 2.64 | BNL0686 | View |
| 14 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch09_At.09 | N/A | 3.29 | BNL0686 | View |
| 15 | AD-genome wide Reference Map (2009) | AD_ch23_Dt.09 | N/A | 24 | BNL0686 | View |
| 16 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 1 | BNL0686 | View |
| 17 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch23_Dt.09 | N/A | 5.35 | BNL0686 | View |
| 18 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch23_Dt.09 | N/A | 34.3 | BNL686b* | View |
| 19 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch23_Dt.09 | N/A | 0 | BNL686-156 | View |
| 20 | TM-1 x 3-79, RIL (2012) | AD_ch23_Dt.09 | N/A | 141.35 | BNL0686a | View |
| 21 | TM-1 x 3-79, RIL (2014) | AD_ch09_At.09 | N/A | 1.8 | BNL0686a | View |
| 22 | TM-1 x 3-79, RIL (2014) | AD_ch23_Dt.09 | N/A | 4.2 | BNL0686a | View |
| 23 | Monsanto SSR Bin Map, (2009) | AD_ch09_At.09 | N/A | 161 | BNL0686a | View |
| 24 | TM-1 x 3-79, RIL (2012) | AD_ch09_At.09 | N/A | 139.43 | BNL0686b | View |
| 25 | Monsanto SSR Bin Map, (2009) | AD_ch23_Dt.09 | N/A | 121 | BNL0686b | View |
| 26 | TM-1 x Hai-7124, BC1 (2007) | AD_ch09_At.09 | N/A | 0 | BNL686-180 | View |
| 27 | TM-1 x Hai-7124, BC1 (2008) | AD_ch09_At.09 | N/A | 0 | BNL686-180 | View |
| 28 | TM-1 x Hai-7124, BC1 (2012) | AD_ch09_At.09 | N/A | 0 | BNL686-180 | View |
| 29 | TM-1 x Hai-7124, BC1 (2007) | AD_ch23_Dt.09 | N/A | 25.4 | BNL686-155 | View |
| 30 | TM-1 x Hai-7124, BC1 (2008) | AD_ch23_Dt.09 | N/A | 24.31 | BNL686-155 | View |
| 31 | TM-1 x Hai-7124, BC1 (2012) | AD_ch23_Dt.09 | N/A | 24.5 | BNL686-155 | View |
| 32 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch09_At.09 | N/A | 0 | BNL686-153 | View |
| 33 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch09_At.09 | N/A | 10 | BNL686-183 | View |
| 34 | TM-1 x 3-79, RIL (2012.v3) | AD_ch09_At.09 | N/A | 1.81 | BNL0686b | View |
| 35 | TM-1 x 3-79, RIL (2012.v3) | AD_ch23_Dt.09 | N/A | 4.24 | BNL0686a | View |
| 36 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch23_Dt.09 | N/A | 32.1 | BNL686a | View |
Sequence
>BNL0686 ID=BNL0686; Name=BNL0686; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
ATTTTTCCCTTGGTGGTCCTTGTTGCTGGATGAATATGGTTAATTTGTGT
CAAAAAACAAGGTGAGAAAAAGAGAAAATAATTATGGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGTGTTTGGTTTATATTTC
TATCATGT
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