CGR5250, CGR5250 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5250
Genbank IDGQ393363
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0328
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5250_F: TATTCCGAATTCGACCTGCT
Primer 2CGR5250_R: TTGAGGCTTAGAATTGCAGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393363
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:3952279..3952434 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:3701257..3701400 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:4086187..4086330 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold5440.1supercontigscaffold5440.1:1939..2091 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:3581908..3582066 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:3713792..3713944 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:3580284..3580442 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:3829067..3829219 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:3722814..3722972 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6469supercontigscaffold6469:10060..10203 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:3627658..3627801 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:3624368..3624520 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:3716162..3716335 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:3756280..3756446 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:3694615..3694770 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:3867964..3868119 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:127887671..127887805 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:126963186..126963329 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:103051638..103051785 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_05chromosomeChr_05:3897700..3897922 -Gossypium harknessii (D2-2) genome ISU_v1n/a
F03chromosomeF03:3720093..3720226 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0328MONCS0328Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A16.2CGR5250View
2W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A78.1CGR5250View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A85.1CGR5250View
4CCRI-36 x G2005, RIL (2016)AD_ch02_At.02N/A0CGR5250View
5Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A61CGR5250View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A24.68CGR5250View
Sequence
>CGR5250 ID=CGR5250; Name=CGR5250; organism=Gossypium hirsutum; type=genetic_marker; length=150bp
TATTCCGAATTCGACCTGCTTAAGGATATAAAATTTGTAACATTAATCCA
TGGTAGAATCACAAGAAAAAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAACTCTAACCTTCTTTATCTGCAATTCTAAGCCTCAA