G. arboreum WHU_v1_a1 Genome (13 chrom. and 1,256 scaffolds)

Human-Readable NameG. arboreum WHU_v1_a1 Genome (13 chrom. and 1,256 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.arboreum_WHU_v1_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for A2_WHU_v1_a1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. arboreum WHU_v1_a1 CDs (43,278)

Human-Readable Name-- G. arboreum WHU_v1_a1 CDs (43,278)
Database Path/mainlab/web/temp/db/cottongen/G.arboreum_WHU_v1.transcripts.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. arboreum WHU_v1_a1 proteins (43,278)

Human-Readable Name-- G. arboreum WHU_v1_a1 proteins (43,278)
Database Path/mainlab/web/temp/db/cottongen/G.arboreum_WHU_v1.pep.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. herbaceum WHU_v1_a1 CDs (43,952)

Human-Readable Name-- G. herbaceum WHU_v1_a1 CDs (43,952)
Database Path/mainlab/web/temp/db/cottongen/G.herbaceum_WHU_v1.transcripts.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. herbaceum WHU_v1_a1 proteins (43,952)

Human-Readable Name-- G. herbaceum WHU_v1_a1 proteins (43,952)
Database Path/mainlab/web/temp/db/cottongen/G.herbaceum_WHU_v1.pep.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. herbaceum WHU_v1_a1 Genome (13 chrom. and 719 scaffolds)

Human-Readable NameG. herbaceum WHU_v1_a1 Genome (13 chrom. and 719 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.herbaceum_WHU_v1_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for A1_WHU_v1_a1
RegEx/^(\S+).*/
Link-out Typejbrowse

Five tetraploid cotton genomes (Chen et al, 2020) available (4/20)

Five tetraploid Gossypium species genomes and comparisons, the results effort led by Dr. Z. Jeffrey Chen from UT-Austin and Drs. Jane Grimwood and Jeremy Schmutz from the HudsonAlpha Institute for Biotechnology, published in Nature Genetics on Apr 21, 2020 (Chen et al. 2020) and available at CottonGen Data Download.

For detailed information, go to pages listed at below:

G. arboreum and G. hirsutum genome updated data available (4/20)

Gossypium arboreum 'Shi Xi Ya 1' and Gossypium hirsutum 'TM-1' genome WHU updated assembly and annotation data (Huamg et al., 2020) available.

The data can be accessed or downloaded from:

Postpone holding 2020 ICGI Research Conference (3/25/20)

Greetings to All ICGI members!

We hope everyone is going well.

I am sorry. After ICGI Steering Committee voted and discussed with the local organizer, we have to make a difficult determination to postpone holding our 2020 International Cotton Genome Initiative (ICGI) Research Conference (originally to be held in August 3-6, 2020) at the Robert H. Smith Faculty of Agriculture, Food and Environment, Rehovot, Israel due to the present epidemic condition. When will we hold the conference remains to be determined depending on epidemic condition.

Sincerely,