Diploid Genome D5

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Assembly - by genome sequencing project
Annotation - by genome sequencing project
CottonGen Annotation

	Sequencing Institute and Genome
Assembly- by sequencing project	D5_BGI	D5_JGI	D5_NSF	D5_ISU	D5_HAU	D5lz_HAU^new
FASTA Files
* Chromosomes + Scaffolds	13+4434 13+4434.md5	13+1020 13+1020.md5	13 13.md5	13+94504 13+94504.md5	13+274 13+274.md5	13+274 13+274.md5
GFF3 \| EXCEL \| TXT Files
* Chromosomes + Scaffolds	13+4434 13+4434.md5	13+1020 13+1020.md5	13			13+274 13+274.md5
Annotation - by sequencing project	D5_BGI	D5_JGI	D5_NSF	D5_ISU	D5_HAU	D5lz_HAU^new
FASTA Files
* Predicted coding sequences	40,976	77,267	41.030	26,065	40,820	50,451
* Predicted protein sequences	40,976	77,267	41,030	26,065	40,820	50,451
* Predicted gene sequences		37,505
GFF3 \| EXCEL \| TXT Files
* Predicted gene alignments	FTP	FTP
* Predicted gene with exon alignments		FTP	FTP	FTP	FTP	FTP
Annotation - by CottonGen Team	D5_BGI	D5_JGI	D5_NSF	D5_ISU	D5_HAU	D5lz_HAU^new
GFF3 \| EXCEL \| TXT files
* Functional
- GO from InterProScan	FTP	FTP	FTP	FTP	FTP	FTP
- IPR from InterProScan	FTP	FTP	FTP	FTP	FTP	FTP
- Genes in KEGG Pathways	FTP		FTP	FTP	FTP	FTP
- Genes mapped to KEGG orthologs	FTP	FTP	FTP	FTP	FTP	FTP
* Marker Alignments
- RFLP-RAD (v. 11/18)	FTP	FTP	FTP	FTP	FTP	FTP
- SSR (v.11/18)	FTP	FTP	FTP	FTP	FTP	FTP
- SNP (v. 11/18)	FTP	FTP	FTP	FTP	FTP	FTP
- InDel (v.11/18)	FTP	FTP	FTP	FTP	FTP	FTP
* Protein Homologies
- Arabidopsis thaliana Araport11	FTP	FTP	FTP	FTP	FTP	FTP
- NCBI nr-all (m/yy = 5/18)	FTP	FTP	FTP	FTP	FTP	FTP (9/21)
- Uniprot swissprot-all (1/19)	FTP	FTP	FTP	FTP	FTP	FTP (9/21)
- Uniprot trembl-all (1/19)	FTP	FTP	FTP	FTP	FTP	FTP (9/21)
* Unigene & Transcript Alignments
- G.arboreum RefTrans v1	FTP	FTP	FTP	FTP	FTP	FTP
- G.barbadense RefTrans v1	FTP	FTP	FTP	FTP	FTP	FTP
- G.hirsutum RefTrans v1	FTP	FTP	FTP	FTP	FTP	FTP
- G.raimondii RefTrans v1	FTP	FTP	FTP	FTP	FTP	FTP

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