Diploid Genome A and D

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  Sequencing Institute and Genome
Assembly- by genome sequencing project A1_WHUnew A2_BGI A2_CRI A2_WHUnew D1_ISU D5_BGI D5_JGI D5_NSF D10_NSF
FASTA Files                  
     * Chromosomes + Scaffolds 13+719 13+75,581 13+4,503 13+1256 13 13+4434 13+1020 13 13
GFF3 | EXCEL | TXT  Files                  
     * Chromosomes + Scaffolds   13+75,581       13+4434 13+1020 13  
Annotation - by genome sequencing project A1_WHUnew A2_BGI A2_CRI A2_WHUnew D1_ISU D5_BGI D5_JGI D5_NSF D10_NSF
FASTA Files                  
    * Predicted coding sequences 43,952 40,134 40,960 43,278 31,520 40,976 77,267   38,871
    * Predicted protein sequences 43,952 40,134 40,960 43,278 31,520 40,976 77,267 41,030 38,871
    * Predicted gene sequences             37,505   39,692
GFF3 | EXCEL | TXT  Files                  
    * Predicted gene alignments FTP FTP FTP FTP   FTP FTP   FTP
    * Predicted gene with exon alignments         FTP   FTP FTP  
Annotation - by CottonGen Team A1_WHUnew A2_BGI A2_CRI A2_WHUnew D1_ISU D5_BGI D5_JGI D5_NSF D10_NSF
GFF3 | EXCEL | TXT  files                  
    * Functional                  
          - GO assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - IPR assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - Genes in KEGG Pathways FTP FTP FTP FTP FTP FTP   FTP FTP
          - Genes mapped to KEGG orthologs FTP FTP FTP FTP FTP FTP FTP FTP FTP
    * Marker Alignments                  
          - CottonGen RFLP-RAD markers (v. 11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - CottonGen SSR markers (v.11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - CottonGen SNP markers (v. 11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - CottonGen InDel markers (v.11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
    * Protein Homologies                
          - Arabidopsis thaliana Araport11 FTP FTP FTP(tair10) FTP FTP FTP FTP FTP FTP
          - NCBI nr-all (v. m/yy = 5/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - Uniprot swissprot-all (v.1/19) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - Uniprot trembl-all (v.1/19) FTP FTP FTP FTP FTP FTP FTP FTP FTP
    * Unigene & Transcript Alignments                   
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP