Gbic_01G007700.1

Transcript Overview
NameGbic_01G007700.1
Unique NameGbic_01G007700.1_G1_HAU_v1
TypemRNA
OrganismGossypium bickii (Cotton (G. bickii))
Sequence length663
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:12723149..12723811 -Gossypium bickii (G1) genome HAU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
d8ig1hL0306Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d8ig1hL0393Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d8ig1hL0815Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d8ig1hL1040Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d8ig1hL1048Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
dtog1hL0084Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dttg1hL0077Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
d9ig1hL0305Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dtog1hL0498Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
d9ig1hL0380Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dttg1hL0523Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtog1hL0708Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtog1hL0714Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dttg1hL0751Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dttg1hL0753Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
d9ig1hL0839Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dtog1hL1043Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dttg1hL0967Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
d9ig1hL1084Gossypium laxum (D9) genome ISU_v1Gossypium laxum
d9ig1hL1093Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dttg1hL1099Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
g1hg1hR005Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hg1hR016Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hg1hR032Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hg1hR042Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hg1hR086Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hgauR0001Gossypium australe (G2) genome CRI_v1.1Gossypium australe
g1hgauR0025Gossypium australe (G2) genome CRI_v1.1Gossypium australe
g1hgauR0031Gossypium australe (G2) genome CRI_v1.1Gossypium australe
g1hgauR0049Gossypium australe (G2) genome CRI_v1.1Gossypium australe
g1hgauR0052Gossypium australe (G2) genome CRI_v1.1Gossypium australe
g1hgauR0081Gossypium australe (G2) genome CRI_v1.1Gossypium australe
g1hgbiR0008Gossypium bickii (G1) genome JZU_v1Gossypium bickii
doog1hL0175Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
g1hgbiR0019Gossypium bickii (G1) genome JZU_v1Gossypium bickii
g1hgbiR0030Gossypium bickii (G1) genome JZU_v1Gossypium bickii
g1hgbiR0045Gossypium bickii (G1) genome JZU_v1Gossypium bickii
g1hgbiR0050Gossypium bickii (G1) genome JZU_v1Gossypium bickii
g1hgbiR0094Gossypium bickii (G1) genome JZU_v1Gossypium bickii
doog1hL0315Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
doog1hL0398Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
doog1hL0862Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
doog1hL1109Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
doog1hL1113Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
g1hgrbR0000Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
g1hgrbR0026Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
g1hgrbR0031Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
g1hgrbR0049Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
g1hgrhR0000Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
g1hgdR0000Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
g1hgrbR0085Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
g1hgrbR0093Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
g1hgrhR0021Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
g1hgdR0033Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
g1hgdR0036Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
g1hgrhR0047Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
g1hgrhR0084Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
g1hgrhR0086Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
g1hgdR0073Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
g1hgdR0101Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
g1hgdR0115Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
g1hgtiR0008Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
g1hgtiR0028Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
g1hgtiR0032Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
g1hgroR0006Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
g1hgroR0020Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
g1hgroR0035Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
g1hgroR0039Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
g1hgtiR0095Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
g1hgtiR0106Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
g1hgroR0060Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
g1hgtiR0109Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
g1hgroR0067Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
g1hgroR0106Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
g1hhwR0000Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
g1hhwR0031Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
g1hhwR0040Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
g1hhwR0054Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
g1hhwR0093Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
g1hhwR0096Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
g1htoR0000Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
g1htoR0030Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
g1htoR0033Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
g1huhR0000Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
g1hhnR0001Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
g1htoR0068Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
g1htoR0087Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
g1htoR0094Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
g1huhR0033Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
g1huhR0036Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
g1hhnR0028Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
g1hhnR0039Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
g1hhnR0044Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
g1huhR0073Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
g1hhnR0084Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
g1huhR0094Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
g1huhR0103Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
g1hhnR0113Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
g1huhR0117Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
g1hhnR0127Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
g1hhnR0147Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gbic_01G007700Gbic_01G007700_G1_HAU_v1Gossypium bickiigene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gbic_01G007700.1_G1_HAU_v1-cdsGbic_01G007700.1_G1_HAU_v1-cds-Chr01_G1_HAU_v1:12723149..12723811Gossypium bickiiCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gbic_01G007700.1_G1_HAU_v1-exonGbic_01G007700.1_G1_HAU_v1-exon-Chr01_G1_HAU_v1:12723149..12723811Gossypium bickiiexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Gbic_01G007700.1_G1_HAU_v1Gbic_01G007700.1_G1_HAU_v1Gossypium bickiipolypeptide
Gbic_01G007700.1_G1_HAU_v1Gbic_01G007700.1_G1_HAU_v1-proteinGossypium bickiipolypeptide


Homology
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A5B6WX63_9ROSI (227 kDa spindle and centromere-associated protein-like protein OS=Gossypium australe OX=47621 GN=EPI10_007463 PE=4 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.523e-115
Identity = 183/220 (83.18%), Postives = 201/220 (91.36%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220
            MTTP YD W SQ+INDNIPT DQED RSLEE+L+V+PSELEIIKQDFE +NREL KRIEQLEEEKMQLGLDVDIQKLEAEK RKGK KAEEDLD LKTDYKKLRRSM+T  +GKTSEQWRQEIKEEK+ ASQWER+LR+T EREDALK++L+ESQNEK+ LK RVSELE+SLYQYRSRNS+ EL+ASLSKIEEMKARIEELESALHG ELR ELFEANE+
Sbjct:  118 MTTPEYDWWGSQKINDNIPTPDQEDIRSLEEHLQVVPSELEIIKQDFERKNRELGKRIEQLEEEKMQLGLDVDIQKLEAEKLRKGKNKAEEDLDSLKTDYKKLRRSMKTAGLGKTSEQWRQEIKEEKHKASQWERKLRETQEREDALKRSLVESQNEKESLKARVSELEKSLYQYRSRNSVVELRASLSKIEEMKARIEELESALHGWELRAELFEANED 337          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8JK41_GOSHI (Vimentin-like OS=Gossypium hirsutum OX=3635 GN=LOC107907861 PE=4 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.518e-97
Identity = 154/218 (70.64%), Postives = 183/218 (83.94%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEAN 218
            MTTP Y+RW +QR+NDNIPTSDQ + +S+EE+L+VIPSELEII+QDFE ++ EL KRIEQLEEEKMQLG+DVD+QKLEAEK RKGK KAEEDLD LKTDYKKLRRSMRT  +GKT EQWR E+KEEK+ A++WE + RD   RE ALK++L+ESQNEKK LK RVSELERSLYQYRSRNS  ELKAS ++I+E+K  IEEL++ L   EL+ EL E N
Sbjct:   88 MTTPEYNRWWNQRLNDNIPTSDQGNPQSIEEHLKVIPSELEIIRQDFERKSLELEKRIEQLEEEKMQLGVDVDVQKLEAEKLRKGKNKAEEDLDSLKTDYKKLRRSMRTAGLGKTFEQWRHEVKEEKSKANKWEEKFRDAQAREGALKRSLVESQNEKKGLKTRVSELERSLYQYRSRNSAIELKASQNRIKELKENIEELKTVLQNRELQIELLEVN 305          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8PQM0_GOSHI (Myosin heavy chain, clone 203-like OS=Gossypium hirsutum OX=3635 GN=LOC107960906 PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.743e-95
Identity = 153/220 (69.55%), Postives = 185/220 (84.09%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220
            MTTP YDRW +QRINDNIPTSDQ + +S+EE+L+VI SELEII+QDFE ++ EL KRIEQLEEEK+QLGLDV++QKLEAEK RKGK KAEEDLD LKTDYKKLR+S+RT  + KTSEQWR E+KEE++ A+QWE + RD   RE AL++ L+ESQNEK+ L++RVSELERSLYQYRSRNS+ ELKAS S+IEE+K  IEEL++AL   EL+ EL E N E
Sbjct:    9 MTTPEYDRWWNQRINDNIPTSDQGNPQSIEEHLKVILSELEIIRQDFERKSLELEKRIEQLEEEKIQLGLDVNVQKLEAEKLRKGKNKAEEDLDSLKTDYKKLRKSIRTAGLRKTSEQWRHEVKEEQSKANQWEEKFRDAQAREGALERCLVESQNEKEGLRIRVSELERSLYQYRSRNSVIELKASQSRIEELKENIEELKTALQNRELQIELLEVNNE 228          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8PB30_GOSHI (Myosin heavy chain, clone 203-like OS=Gossypium hirsutum OX=3635 GN=LOC107957370 PE=4 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 2.904e-94
Identity = 150/218 (68.81%), Postives = 181/218 (83.03%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEAN 218
            MTTP YDRW ++R+N+NIPTSDQ + +S+EE+L+VIPS+LEII+QDFE ++ EL K+IEQLEEEKMQL LDVD+QKLEAEK RKGK K EEDLD LK DYKKLRRSMRT  +GKTSEQWR E+KEE++ A+QWE + RD   RE ALK++L+ESQNEK+ LK RVSELERSLYQYRSRNS  ELKAS ++IEE+K  IEEL++ L   EL+ EL E N
Sbjct:    9 MTTPEYDRWWNRRLNNNIPTSDQGNPQSIEEHLKVIPSDLEIIRQDFERKSLELEKKIEQLEEEKMQLRLDVDVQKLEAEKLRKGKNKVEEDLDSLKMDYKKLRRSMRTAGLGKTSEQWRHEVKEEQSKANQWEEKFRDAQAREVALKRSLVESQNEKEGLKTRVSELERSLYQYRSRNSAIELKASQNRIEELKENIEELKTVLQNRELQIELLEVN 226          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8PAQ9_GOSHI (Myosin heavy chain, clone 203-like OS=Gossypium hirsutum OX=3635 GN=LOC107957297 PE=4 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.820e-92
Identity = 142/201 (70.65%), Postives = 171/201 (85.07%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEEL 201
            MTTP YDRWR  RIN+NIP+ DQ + RS+EE+L+VIPSELEII+QDFE ++ EL KRIEQLEEEKMQLGLDVD+QKLEAE+ RKG+  AEEDLD LKTDYKKLRRSMRT  +GKTSEQW+QE+KEE++ A+QWE + RD   RE ALK++L+E QNEK+ L++RVSELERSLYQY SRNS  ELK+S ++IEE+K  IEEL
Sbjct:    9 MTTPEYDRWRDHRINNNIPSLDQGNLRSIEEHLKVIPSELEIIRQDFERKSLELEKRIEQLEEEKMQLGLDVDVQKLEAERLRKGENNAEEDLDSLKTDYKKLRRSMRTAGLGKTSEQWQQEVKEEQSKANQWEEKFRDAQAREGALKRSLVEVQNEKEGLRIRVSELERSLYQYHSRNSAIELKSSQNRIEELKENIEEL 209          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A5B6WUI4_9ROSI (Coiled-coil domain-containing protein 102A-like protein OS=Gossypium australe OX=47621 GN=EPI10_007101 PE=4 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 8.347e-92
Identity = 142/220 (64.55%), Postives = 177/220 (80.45%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220
            M TP YDRWRSQ +NDNIP +   + + +EE+LRV+PSELEIIKQDF +R+ EL K+IEQLEEEKM+LGLDVDI KLEA+K RKGK KAE+ LD LKTDYKKL  S+RT  +GKTSEQWRQEIKEEK  A QWE++ +D   RED LK++L+ESQNEK++L+ RV ELE+SL+ +RS NS+ EL+AS +KIEE+K R+EELE+AL   ++  EL EAN E
Sbjct:   39 MATPEYDRWRSQSVNDNIPITSLRNAQPIEEHLRVVPSELEIIKQDFAKRSSELGKKIEQLEEEKMKLGLDVDIHKLEAQKLRKGKNKAEKYLDSLKTDYKKLHMSIRTAGLGKTSEQWRQEIKEEKTRADQWEKKFQDARVREDVLKKSLLESQNEKERLRGRVGELEKSLHLHRSHNSVIELRASQNKIEELKGRMEELETALRDSKIGVELLEANNE 258          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A8J5YI53_9ROSI (Aminotransferase-like plant mobile domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_015981 PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.754e-91
Identity = 155/220 (70.45%), Postives = 178/220 (80.91%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220
            M T  YD+WR QRINDNIPT DQE  RS+EE LR IPSELEI++ DFE ++ EL KRIEQLEEEKMQLGLDVD+QKLEAE+ RKGK KAEEDLD LKTDYKKLRRSMRT  +GKTSEQWRQEIKEE+  ASQWE   RD   RED LK++L+ESQNEK+ L+MRV+ELE+SLYQ R+RNS+ ELKAS SKIEE+K  IEEL+ AL   EL+ E  E N +
Sbjct:  401 MATLEYDQWRIQRINDNIPTPDQEGPRSMEECLRPIPSELEIVRHDFERKSLELEKRIEQLEEEKMQLGLDVDVQKLEAERLRKGKNKAEEDLDSLKTDYKKLRRSMRTAGLGKTSEQWRQEIKEEQRKASQWEERFRDAQAREDTLKESLVESQNEKEGLRMRVTELEKSLYQQRARNSVIELKASQSKIEELKGNIEELKVALQDRELQLEFLEINND 620          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A7J8WCD0_9ROSI (Aminotransferase-like plant mobile domain-containing protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_007363 PE=4 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.317e-90
Identity = 151/219 (68.95%), Postives = 176/219 (80.37%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANE 219
            MTTP Y+ W ++RINDNIP S+Q D +SLEE+LRV+PS+LEIIKQDFE+ N EL K+IEQLEEEKM LGLDVD+ KLE EK RKGK KAEEDLD LKTDYKKLR S+RT  +GKTSEQWRQEI+EEK  A  WE++ ++   R  AL+++L E Q EK KLK RV+ELERSL+QYRSRNS  +LKASLSKIEEMK RIEELES L  CE+R E  E NE
Sbjct:  345 MTTPEYNEWWARRINDNIPRSNQGDGQSLEEHLRVVPSKLEIIKQDFEKMNAELEKKIEQLEEEKMHLGLDVDVHKLETEKLRKGKNKAEEDLDSLKTDYKKLRLSIRTAGLGKTSEQWRQEIREEKIKADGWEKKFQEVQTRNGALEKSLSEYQKEKGKLKGRVAELERSLHQYRSRNSAMKLKASLSKIEEMKGRIEELESTLRSCEIRTEHLEINE 563          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A5B6W4D1_9ROSI (Coiled-coil domain-containing protein 102A-like protein OS=Gossypium australe OX=47621 GN=EPI10_010479 PE=4 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.608e-90
Identity = 144/220 (65.45%), Postives = 176/220 (80.00%), Query Frame = 0
Query:    1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220
            MTTP YD+W   +INDNIPT DQE+ RS++E+L+VI SEL+IIKQDFE+++ EL KRIEQLE+EKMQLGLDVD+QKLEAEK RKG  K E+DLD  KTDYKKLRRSMRT  +GKTSE+WRQEIKEEKN   QWE E +D   R + L+++L E QN+K +LK RV+ELE+S +Q  +RNS  +LKAS+ KIEE+K +IEELE  L  CELR ELFEA+ E
Sbjct:   94 MTTPEYDQWWGHKINDNIPTLDQENTRSIKEHLQVISSELDIIKQDFEKKSLELGKRIEQLEDEKMQLGLDVDVQKLEAEKLRKGMNKVEKDLDSFKTDYKKLRRSMRTAGLGKTSEKWRQEIKEEKNRTDQWENECQDAQVRGNTLERDLSECQNKKIRLKARVTELEKSFHQCCNRNSTIQLKASIKKIEELKWKIEELEITLQNCELRVELFEASNE 313          
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8KHM2_GOSHI (Puff II/9-2 protein-like OS=Gossypium hirsutum OX=3635 GN=LOC107917186 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.355e-90
Identity = 148/215 (68.84%), Postives = 173/215 (80.47%), Query Frame = 0
Query:    2 TTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFE 216
            TTP Y  WR +RINDNIP S ++  RS+EE+LRV+PSELEIIKQDFE+R+ E  K IEQLEEEKM+LGLDVDI K+EAE+ RKGK KAEEDLD LKTDYKKLR SMRT  +GKTSEQWRQEIKEEK  A Q E++ +D   R+ AL+Q+L E QNE+ +LK RV+ELERSL+  RSRNS+ ELKASLS+IEE+K RIEELE AL   ELR EL E
Sbjct:   20 TTPEYHGWRIERINDNIPKSREDYGRSIEEHLRVVPSELEIIKQDFEKRSSEYGKMIEQLEEEKMRLGLDVDIHKMEAERLRKGKNKAEEDLDSLKTDYKKLRLSMRTAGLGKTSEQWRQEIKEEKTKAEQLEKKFQDAQARKSALEQSLSECQNEEARLKDRVAELERSLHLCRSRNSVIELKASLSRIEELKERIEELEDALQNSELRVELLE 234          
The following BLAST results are available for this feature:
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Analysis Date: 2023-09-20 (BLASTP of HAU v1.0 Gossypium bickii (G1) proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5B6WX63_9ROSI4.523e-11583.18227 kDa spindle and centromere-associated protein-... [more]
A0A1U8JK41_GOSHI1.518e-9770.64Vimentin-like OS=Gossypium hirsutum OX=3635 GN=LOC... [more]
A0A1U8PQM0_GOSHI3.743e-9569.55Myosin heavy chain, clone 203-like OS=Gossypium hi... [more]
A0A1U8PB30_GOSHI2.904e-9468.81Myosin heavy chain, clone 203-like OS=Gossypium hi... [more]
A0A1U8PAQ9_GOSHI2.820e-9270.65Myosin heavy chain, clone 203-like OS=Gossypium hi... [more]
A0A5B6WUI4_9ROSI8.347e-9264.55Coiled-coil domain-containing protein 102A-like pr... [more]
A0A8J5YI53_9ROSI2.754e-9170.45Aminotransferase-like plant mobile domain-containi... [more]
A0A7J8WCD0_9ROSI1.317e-9068.95Aminotransferase-like plant mobile domain-containi... [more]
A0A5B6W4D1_9ROSI1.608e-9065.45Coiled-coil domain-containing protein 102A-like pr... [more]
A0A1U8KHM2_GOSHI6.355e-9068.84Puff II/9-2 protein-like OS=Gossypium hirsutum OX=... [more]
back to top
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Analysis Date: 2023-09-20 (BLASTP of HAU v1.0 Gossypium bickii (G1) proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Analysis Date: 2023-09-20 (BLASTP of HAU v1.0 Gossypium bickii (G1) proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan Analysis for HAU v1.0 Gossypium bickii (G1) proteins
Date Performed: 2023-09-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePIRSRPIRSR002855-1PIRSR002855-1coord: 51..102
e-value: 0.0068
score: 9.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR48200PROTEIN, PUTATIVE-RELATEDcoord: 1..200

Sequences
The following sequences are available for this feature:

mRNA sequence

>Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1; organism=Gossypium bickii; type=mRNA; length=663bp
ATGACGACCCCTGCGTATGACCGATGGCGAAGTCAAAGAATCAATGATAA
CATCCCCACATCAGACCAAGAAGACAACCGATCACTAGAAGAGTACTTAC
GAGTGATCCCTTCCGAGCTTGAAATCATCAAACAAGACTTCGAAGAAAGG
AACCGGGAATTAAGGAAAAGGATAGAACAGCTAGAGGAAGAGAAAATGCA
GCTAGGTTTGGATGTCGATATCCAAAAACTAGAAGCTGAGAAGTGGAGAA
AAGGGAAGACTAAAGCTGAAGAAGATTTGGATGGTTTGAAGACTGACTAC
AAGAAGCTACGAAGGTCGATGAGAACTACGAGAATTGGAAAAACGTCAGA
GCAATGGCGTCAAGAAATTAAAGAAGAAAAGAACATAGCGAGTCAGTGGG
AAAGGGAACTCCGAGATACCTATGAGCGAGAAGATGCCCTAAAACAGAAT
TTGATGGAAAGTCAAAATGAGAAGAAGAAATTAAAAATGCGGGTGTCAGA
ATTGGAAAGATCACTATATCAGTATCGTAGCCGTAATTCCATAGCCGAAT
TAAAGGCTAGTCTGAGCAAAATTGAAGAAATGAAAGCAAGAATTGAAGAG
CTAGAATCTGCCTTACATGGCTGCGAGCTACGGGAAGAACTTTTTGAAGC
CAATGAGGAGTGA
back to top

protein sequence of Gbic_01G007700.1_G1_HAU_v1

>Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1_G1_HAU_v1; organism=Gossypium bickii; type=polypeptide; length=221bp
MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEER
NRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDY
KKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQN
LMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEE
LESALHGCELREELFEANEE.
back to top

mRNA from alignment at Chr01:12723149..12723811-

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1; organism=Gossypium bickii; type=mRNA; length=663bp; location=Sequence derived from: Chr01:12723149..12723811- (Gossypium bickii
ATGACGACCCCTGCGTATGACCGATGGCGAAGTCAAAGAATCAATGATAA CATCCCCACATCAGACCAAGAAGACAACCGATCACTAGAAGAGTACTTAC GAGTGATCCCTTCCGAGCTTGAAATCATCAAACAAGACTTCGAAGAAAGG AACCGGGAATTAAGGAAAAGGATAGAACAGCTAGAGGAAGAGAAAATGCA GCTAGGTTTGGATGTCGATATCCAAAAACTAGAAGCTGAGAAGTGGAGAA AAGGGAAGACTAAAGCTGAAGAAGATTTGGATGGTTTGAAGACTGACTAC AAGAAGCTACGAAGGTCGATGAGAACTACGAGAATTGGAAAAACGTCAGA GCAATGGCGTCAAGAAATTAAAGAAGAAAAGAACATAGCGAGTCAGTGGG AAAGGGAACTCCGAGATACCTATGAGCGAGAAGATGCCCTAAAACAGAAT TTGATGGAAAGTCAAAATGAGAAGAAGAAATTAAAAATGCGGGTGTCAGA ATTGGAAAGATCACTATATCAGTATCGTAGCCGTAATTCCATAGCCGAAT TAAAGGCTAGTCTGAGCAAAATTGAAGAAATGAAAGCAAGAATTGAAGAG CTAGAATCTGCCTTACATGGCTGCGAGCTACGGGAAGAACTTTTTGAAGC CAATGAGGAGTGA
back to top

Coding sequence (CDS) from alignment at Chr01:12723149..12723811-

>Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1; organism=Gossypium bickii; type=CDS; length=663bp; location=Sequence derived from: Chr01:12723149..12723811- (Gossypium bickii
ATGACGACCCCTGCGTATGACCGATGGCGAAGTCAAAGAATCAATGATAA
CATCCCCACATCAGACCAAGAAGACAACCGATCACTAGAAGAGTACTTAC
GAGTGATCCCTTCCGAGCTTGAAATCATCAAACAAGACTTCGAAGAAAGG
AACCGGGAATTAAGGAAAAGGATAGAACAGCTAGAGGAAGAGAAAATGCA
GCTAGGTTTGGATGTCGATATCCAAAAACTAGAAGCTGAGAAGTGGAGAA
AAGGGAAGACTAAAGCTGAAGAAGATTTGGATGGTTTGAAGACTGACTAC
AAGAAGCTACGAAGGTCGATGAGAACTACGAGAATTGGAAAAACGTCAGA
GCAATGGCGTCAAGAAATTAAAGAAGAAAAGAACATAGCGAGTCAGTGGG
AAAGGGAACTCCGAGATACCTATGAGCGAGAAGATGCCCTAAAACAGAAT
TTGATGGAAAGTCAAAATGAGAAGAAGAAATTAAAAATGCGGGTGTCAGA
ATTGGAAAGATCACTATATCAGTATCGTAGCCGTAATTCCATAGCCGAAT
TAAAGGCTAGTCTGAGCAAAATTGAAGAAATGAAAGCAAGAATTGAAGAG
CTAGAATCTGCCTTACATGGCTGCGAGCTACGGGAAGAACTTTTTGAAGC
CAATGAGGAGTGA
back to top