Gbic_01G007700.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A5B6WX63_9ROSI (227 kDa spindle and centromere-associated protein-like protein OS=Gossypium australe OX=47621 GN=EPI10_007463 PE=4 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 4.523e-115 Identity = 183/220 (83.18%), Postives = 201/220 (91.36%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220 MTTP YD W SQ+INDNIPT DQED RSLEE+L+V+PSELEIIKQDFE +NREL KRIEQLEEEKMQLGLDVDIQKLEAEK RKGK KAEEDLD LKTDYKKLRRSM+T +GKTSEQWRQEIKEEK+ ASQWER+LR+T EREDALK++L+ESQNEK+ LK RVSELE+SLYQYRSRNS+ EL+ASLSKIEEMKARIEELESALHG ELR ELFEANE+ Sbjct: 118 MTTPEYDWWGSQKINDNIPTPDQEDIRSLEEHLQVVPSELEIIKQDFERKNRELGKRIEQLEEEKMQLGLDVDIQKLEAEKLRKGKNKAEEDLDSLKTDYKKLRRSMKTAGLGKTSEQWRQEIKEEKHKASQWERKLRETQEREDALKRSLVESQNEKESLKARVSELEKSLYQYRSRNSVVELRASLSKIEEMKARIEELESALHGWELRAELFEANED 337
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8JK41_GOSHI (Vimentin-like OS=Gossypium hirsutum OX=3635 GN=LOC107907861 PE=4 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.518e-97 Identity = 154/218 (70.64%), Postives = 183/218 (83.94%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEAN 218 MTTP Y+RW +QR+NDNIPTSDQ + +S+EE+L+VIPSELEII+QDFE ++ EL KRIEQLEEEKMQLG+DVD+QKLEAEK RKGK KAEEDLD LKTDYKKLRRSMRT +GKT EQWR E+KEEK+ A++WE + RD RE ALK++L+ESQNEKK LK RVSELERSLYQYRSRNS ELKAS ++I+E+K IEEL++ L EL+ EL E N Sbjct: 88 MTTPEYNRWWNQRLNDNIPTSDQGNPQSIEEHLKVIPSELEIIRQDFERKSLELEKRIEQLEEEKMQLGVDVDVQKLEAEKLRKGKNKAEEDLDSLKTDYKKLRRSMRTAGLGKTFEQWRHEVKEEKSKANKWEEKFRDAQAREGALKRSLVESQNEKKGLKTRVSELERSLYQYRSRNSAIELKASQNRIKELKENIEELKTVLQNRELQIELLEVN 305
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8PQM0_GOSHI (Myosin heavy chain, clone 203-like OS=Gossypium hirsutum OX=3635 GN=LOC107960906 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 3.743e-95 Identity = 153/220 (69.55%), Postives = 185/220 (84.09%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220 MTTP YDRW +QRINDNIPTSDQ + +S+EE+L+VI SELEII+QDFE ++ EL KRIEQLEEEK+QLGLDV++QKLEAEK RKGK KAEEDLD LKTDYKKLR+S+RT + KTSEQWR E+KEE++ A+QWE + RD RE AL++ L+ESQNEK+ L++RVSELERSLYQYRSRNS+ ELKAS S+IEE+K IEEL++AL EL+ EL E N E Sbjct: 9 MTTPEYDRWWNQRINDNIPTSDQGNPQSIEEHLKVILSELEIIRQDFERKSLELEKRIEQLEEEKIQLGLDVNVQKLEAEKLRKGKNKAEEDLDSLKTDYKKLRKSIRTAGLRKTSEQWRHEVKEEQSKANQWEEKFRDAQAREGALERCLVESQNEKEGLRIRVSELERSLYQYRSRNSVIELKASQSRIEELKENIEELKTALQNRELQIELLEVNNE 228
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8PB30_GOSHI (Myosin heavy chain, clone 203-like OS=Gossypium hirsutum OX=3635 GN=LOC107957370 PE=4 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 2.904e-94 Identity = 150/218 (68.81%), Postives = 181/218 (83.03%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEAN 218 MTTP YDRW ++R+N+NIPTSDQ + +S+EE+L+VIPS+LEII+QDFE ++ EL K+IEQLEEEKMQL LDVD+QKLEAEK RKGK K EEDLD LK DYKKLRRSMRT +GKTSEQWR E+KEE++ A+QWE + RD RE ALK++L+ESQNEK+ LK RVSELERSLYQYRSRNS ELKAS ++IEE+K IEEL++ L EL+ EL E N Sbjct: 9 MTTPEYDRWWNRRLNNNIPTSDQGNPQSIEEHLKVIPSDLEIIRQDFERKSLELEKKIEQLEEEKMQLRLDVDVQKLEAEKLRKGKNKVEEDLDSLKMDYKKLRRSMRTAGLGKTSEQWRHEVKEEQSKANQWEEKFRDAQAREVALKRSLVESQNEKEGLKTRVSELERSLYQYRSRNSAIELKASQNRIEELKENIEELKTVLQNRELQIELLEVN 226
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8PAQ9_GOSHI (Myosin heavy chain, clone 203-like OS=Gossypium hirsutum OX=3635 GN=LOC107957297 PE=4 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 2.820e-92 Identity = 142/201 (70.65%), Postives = 171/201 (85.07%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEEL 201 MTTP YDRWR RIN+NIP+ DQ + RS+EE+L+VIPSELEII+QDFE ++ EL KRIEQLEEEKMQLGLDVD+QKLEAE+ RKG+ AEEDLD LKTDYKKLRRSMRT +GKTSEQW+QE+KEE++ A+QWE + RD RE ALK++L+E QNEK+ L++RVSELERSLYQY SRNS ELK+S ++IEE+K IEEL Sbjct: 9 MTTPEYDRWRDHRINNNIPSLDQGNLRSIEEHLKVIPSELEIIRQDFERKSLELEKRIEQLEEEKMQLGLDVDVQKLEAERLRKGENNAEEDLDSLKTDYKKLRRSMRTAGLGKTSEQWQQEVKEEQSKANQWEEKFRDAQAREGALKRSLVEVQNEKEGLRIRVSELERSLYQYHSRNSAIELKSSQNRIEELKENIEEL 209
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A5B6WUI4_9ROSI (Coiled-coil domain-containing protein 102A-like protein OS=Gossypium australe OX=47621 GN=EPI10_007101 PE=4 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 8.347e-92 Identity = 142/220 (64.55%), Postives = 177/220 (80.45%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220 M TP YDRWRSQ +NDNIP + + + +EE+LRV+PSELEIIKQDF +R+ EL K+IEQLEEEKM+LGLDVDI KLEA+K RKGK KAE+ LD LKTDYKKL S+RT +GKTSEQWRQEIKEEK A QWE++ +D RED LK++L+ESQNEK++L+ RV ELE+SL+ +RS NS+ EL+AS +KIEE+K R+EELE+AL ++ EL EAN E Sbjct: 39 MATPEYDRWRSQSVNDNIPITSLRNAQPIEEHLRVVPSELEIIKQDFAKRSSELGKKIEQLEEEKMKLGLDVDIHKLEAQKLRKGKNKAEKYLDSLKTDYKKLHMSIRTAGLGKTSEQWRQEIKEEKTRADQWEKKFQDARVREDVLKKSLLESQNEKERLRGRVGELEKSLHLHRSHNSVIELRASQNKIEELKGRMEELETALRDSKIGVELLEANNE 258
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A8J5YI53_9ROSI (Aminotransferase-like plant mobile domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_015981 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 2.754e-91 Identity = 155/220 (70.45%), Postives = 178/220 (80.91%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220 M T YD+WR QRINDNIPT DQE RS+EE LR IPSELEI++ DFE ++ EL KRIEQLEEEKMQLGLDVD+QKLEAE+ RKGK KAEEDLD LKTDYKKLRRSMRT +GKTSEQWRQEIKEE+ ASQWE RD RED LK++L+ESQNEK+ L+MRV+ELE+SLYQ R+RNS+ ELKAS SKIEE+K IEEL+ AL EL+ E E N + Sbjct: 401 MATLEYDQWRIQRINDNIPTPDQEGPRSMEECLRPIPSELEIVRHDFERKSLELEKRIEQLEEEKMQLGLDVDVQKLEAERLRKGKNKAEEDLDSLKTDYKKLRRSMRTAGLGKTSEQWRQEIKEEQRKASQWEERFRDAQAREDTLKESLVESQNEKEGLRMRVTELEKSLYQQRARNSVIELKASQSKIEELKGNIEELKVALQDRELQLEFLEINND 620
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A7J8WCD0_9ROSI (Aminotransferase-like plant mobile domain-containing protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_007363 PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.317e-90 Identity = 151/219 (68.95%), Postives = 176/219 (80.37%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANE 219 MTTP Y+ W ++RINDNIP S+Q D +SLEE+LRV+PS+LEIIKQDFE+ N EL K+IEQLEEEKM LGLDVD+ KLE EK RKGK KAEEDLD LKTDYKKLR S+RT +GKTSEQWRQEI+EEK A WE++ ++ R AL+++L E Q EK KLK RV+ELERSL+QYRSRNS +LKASLSKIEEMK RIEELES L CE+R E E NE Sbjct: 345 MTTPEYNEWWARRINDNIPRSNQGDGQSLEEHLRVVPSKLEIIKQDFEKMNAELEKKIEQLEEEKMHLGLDVDVHKLETEKLRKGKNKAEEDLDSLKTDYKKLRLSIRTAGLGKTSEQWRQEIREEKIKADGWEKKFQEVQTRNGALEKSLSEYQKEKGKLKGRVAELERSLHQYRSRNSAMKLKASLSKIEEMKGRIEELESTLRSCEIRTEHLEINE 563
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A5B6W4D1_9ROSI (Coiled-coil domain-containing protein 102A-like protein OS=Gossypium australe OX=47621 GN=EPI10_010479 PE=4 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 1.608e-90 Identity = 144/220 (65.45%), Postives = 176/220 (80.00%), Query Frame = 0 Query: 1 MTTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFEANEE 220 MTTP YD+W +INDNIPT DQE+ RS++E+L+VI SEL+IIKQDFE+++ EL KRIEQLE+EKMQLGLDVD+QKLEAEK RKG K E+DLD KTDYKKLRRSMRT +GKTSE+WRQEIKEEKN QWE E +D R + L+++L E QN+K +LK RV+ELE+S +Q +RNS +LKAS+ KIEE+K +IEELE L CELR ELFEA+ E Sbjct: 94 MTTPEYDQWWGHKINDNIPTLDQENTRSIKEHLQVISSELDIIKQDFEKKSLELGKRIEQLEDEKMQLGLDVDVQKLEAEKLRKGMNKVEKDLDSFKTDYKKLRRSMRTAGLGKTSEKWRQEIKEEKNRTDQWENECQDAQVRGNTLERDLSECQNKKIRLKARVTELEKSFHQCCNRNSTIQLKASIKKIEELKWKIEELEITLQNCELRVELFEASNE 313
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Match: A0A1U8KHM2_GOSHI (Puff II/9-2 protein-like OS=Gossypium hirsutum OX=3635 GN=LOC107917186 PE=4 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 6.355e-90 Identity = 148/215 (68.84%), Postives = 173/215 (80.47%), Query Frame = 0 Query: 2 TTPAYDRWRSQRINDNIPTSDQEDNRSLEEYLRVIPSELEIIKQDFEERNRELRKRIEQLEEEKMQLGLDVDIQKLEAEKWRKGKTKAEEDLDGLKTDYKKLRRSMRTTRIGKTSEQWRQEIKEEKNIASQWERELRDTYEREDALKQNLMESQNEKKKLKMRVSELERSLYQYRSRNSIAELKASLSKIEEMKARIEELESALHGCELREELFE 216 TTP Y WR +RINDNIP S ++ RS+EE+LRV+PSELEIIKQDFE+R+ E K IEQLEEEKM+LGLDVDI K+EAE+ RKGK KAEEDLD LKTDYKKLR SMRT +GKTSEQWRQEIKEEK A Q E++ +D R+ AL+Q+L E QNE+ +LK RV+ELERSL+ RSRNS+ ELKASLS+IEE+K RIEELE AL ELR EL E Sbjct: 20 TTPEYHGWRIERINDNIPKSREDYGRSIEEHLRVVPSELEIIKQDFEKRSSEYGKMIEQLEEEKMRLGLDVDIHKMEAERLRKGKNKAEEDLDSLKTDYKKLRLSMRTAGLGKTSEQWRQEIKEEKTKAEQLEKKFQDAQARKSALEQSLSECQNEEARLKDRVAELERSLHLCRSRNSVIELKASLSRIEELKERIEELEDALQNSELRVELLE 234 The following BLAST results are available for this feature:
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Analysis Date: 2023-09-20 (BLASTP of HAU v1.0 Gossypium bickii (G1) proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Analysis Date: 2023-09-20 (BLASTP of HAU v1.0 Gossypium bickii (G1) proteins vs UniProt Swissprot) Total hits: 0
BLAST of Gbic_01G007700.1 vs. ExPASy TrEMBL
Analysis Date: 2023-09-20 (BLASTP of HAU v1.0 Gossypium bickii (G1) proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for HAU v1.0 Gossypium bickii (G1) proteins
Date Performed: 2023-09-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1; organism=Gossypium bickii; type=mRNA; length=663bpback to top protein sequence of Gbic_01G007700.1_G1_HAU_v1 >Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1_G1_HAU_v1; organism=Gossypium bickii; type=polypeptide; length=221bpback to top mRNA from alignment at Chr01:12723149..12723811- Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1; organism=Gossypium bickii; type=mRNA; length=663bp; location=Sequence derived from: Chr01:12723149..12723811- (Gossypium bickiiback to top Coding sequence (CDS) from alignment at Chr01:12723149..12723811- >Gbic_01G007700.1_G1_HAU_v1 ID=Gbic_01G007700.1_G1_HAU_v1; Name=Gbic_01G007700.1; organism=Gossypium bickii; type=CDS; length=663bp; location=Sequence derived from: Chr01:12723149..12723811- (Gossypium bickiiback to top |