genemark-Dt_09_GB713-gene-23.125-mRNA-1

Transcript Overview
Namegenemark-Dt_09_GB713-gene-23.125-mRNA-1
Unique Namegenemark-Dt_09_GB713-gene-23.125_NSF_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length2598
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Dt_09_GB713chromosomeDt_09_GB713:23817045..23821794 +Gossypium hirsutum (AD1) 'B713' genome NSF_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
adbbarR1923Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbbarR1979Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbd3dR1619Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
adbd3dR1658Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
adbadbR1687Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbawR1583Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
adbawR1640Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
adbawR1692Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
adbd9iR1119Gossypium laxum (D9) genome ISU_v1Gossypium laxum
adbdfiR1097Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adbd9iR1159Gossypium laxum (D9) genome ISU_v1Gossypium laxum
adbdfiR1131Gossypium aridum (D4) genome ISU_v1Gossypium aridum
adbd8iR1117Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adbd8iR1137Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
adbdsiR0960Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
adbdtoR1064Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
adbdtoR1073Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
adbd3kR1161Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
adbd3kR1200Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
adbdooR1166Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adbdqiR1128Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
adbdooR1207Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
adbdqiR1178Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
adbdttR1082Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
adbdttR1105Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
adbganR1510Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
adbganR1564Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
adbganR1614Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
adbfnR1507Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adbfnR1603Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adbgauR1340Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adbgauR1364Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adbgauR1368Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adbgdR1735Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adbgdR1795Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
adbgkR1287Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adbgkR1360Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adbgkR1362Gossypioides kirkii genome ISU_v3Gossypioides kirkii
adbghR1412Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adbghR1453Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adbghzR1640Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adbghzR1692Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adbghtR1821Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adbghtR1883Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adbgosR1523Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adbgosR1586Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adbgosR1620Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
adbgroR1711Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adbgrbR1448Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adbgroR1825Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adbgrbR1547Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adbgrhR1555Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adbgtbR1510Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
adbgrhR1662Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adbgtbR1611Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
adbgtiR1601Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adbgtiR1638Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adbhgsR1602Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adbhgsR1651Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adbhwR1600Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
adbhwR1648Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
adbhwR1700Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
adbhjR1989Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adbhjR2049Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adbhnR2143Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adbhnR2149Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adbhnR2198Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adbtwR1890Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
adbuhR1531Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
adbtoR1566Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adbtwR1918Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
adbtwR1930Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
adbtoR1613Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adbuhR1580Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
adbtwR1994Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
adbhzR1903Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
adbhzR1962Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
adbjmbR1957Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
adbjmbR2019Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
adbpscR1908Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adbpscR1963Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adbadyR1859Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adbadyR1901Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adbadyR1956Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adbhpfR1735Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
adbhpfR1806Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
adbhpfR1857Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
genemark-Dt_09-proG-23.244-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
genemark-Dt_09-g-23.244-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Gh_D09G068100.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghicr24_D09G066800.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
genemark-Dt_09_GB713-gene-23.125genemark-Dt_09_GB713-gene-23.125_NSF_v1Gossypium hirsutumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
genemark-Dt_09_GB713-gene-23.125_NSF_v1genemark-Dt_09_GB713-gene-23.125_NSF_v1Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8482395.1| (hypothetical protein CXB51_027330 [Gossypium anomalum])

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 343/657 (52.21%), Postives = 425/657 (64.69%), Query Frame = 0 
Query:  298 YASLGEDVNYNGPVVANVWGPAPIFSNGFRYYVAFADAYSRYT-----------LGI-------VQRVM-CPYTSEQN--GLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHLINRLLSSPLGRHHAHFWGILRVIKDIDVKLMMGGYMSHAMLLVVPPARPAHVVVTAPVPVVN----STVAPHVSNLVATHMSPPPPSAPVNSHAMVTRSKA----------------NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVF 864
            Y SL   +     +V++VWGPAP+ S+GF YYVAF D Y+RYT           L +       V+RV+ C   + Q+  G   H  +QI+E  LSML HA+M ++YW D FS+A++LINRL SSPL +  +     L          M  GY    +   + P        ++P P+ +    +T  PH S  +             N+   V R KA                +TFSPVV+A TIRTVL++AVMKGWSLRQVDVNNAFLN  LTE++YM QPP F++   NGQ+L+                                                 LLLM  V+DI++T SS  ++D V+QQLH +F LKDMG+L FFLG+ V H ++G++LSQKKY+ DILHKT + GA+  PTPMV T KLV S+DSPPFADGPLYRS+VGMLQY+CITRPDL+F V KLSQ+MN+PS+ HWK VKRVLRY + T+DHGLF + G FELV YSDADW + V+DRRSTTGYV+YL SNPIAWCSKKQ VVSRSSSEAEYRSLANCV+ELLW+KQL+DE+G++PCQ  VVWCDNTST++MAANPTHHAR+KH+EIDHHF+REKVLD  L VNFVPS KQVADVLTK I+PKQF  F
Sbjct:   10 YESLTTHIAPLQLIVSDVWGPAPVTSDGFCYYVAFTDVYTRYTWVYVLKQKSKVLTVFPQFHRQVERVLGCRLQALQSDRGGEFHALKQIVETGLSMLVHATMPLSYWRDTFSTAVYLINRLPSSPLNQFRSTPCTFL------GYSPMHKGYRCQDVNSSLSPPSSNLPDPSSPQPLPDQNPSTTFLPHNSYAMVKR----------NADGTVDRYKARLVAKGFSQHAGLDFRDTFSPVVRAVTIRTVLALAVMKGWSLRQVDVNNAFLNGVLTEKVYMSQPPGFDMVAPNGQQLVCKLNKALYGLRQAPRAWFQTLKHYLVAQLGFRASKADLSLFIRATIESSLLLMAYVNDIIITGSSTNEIDTVVQQLHRQFTLKDMGQLYFFLGVSVHHTSQGLLLSQKKYITDILHKTGMSGASTTPTPMVSTPKLVASDDSPPFADGPLYRSIVGMLQYVCITRPDLSFCVNKLSQYMNAPSEAHWKAVKRVLRYLLGTLDHGLFFSKGQFELVGYSDADWASSVEDRRSTTGYVIYLGSNPIAWCSKKQPVVSRSSSEAEYRSLANCVAELLWVKQLLDELGMSPCQFPVVWCDNTSTMSMAANPTHHARVKHIEIDHHFIREKVLDGTLLVNFVPSDKQVADVLTKPITPKQFATF 650
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8493453.1| (hypothetical protein CXB51_010754 [Gossypium anomalum])

HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 269/401 (67.08%), Postives = 318/401 (79.30%), Query Frame = 0 
Query:  492 NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL---------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            +TFSPVV+A TIRT+L+V VMKGWSLRQVDVNNAFLN ELTEEIYM QP RFE +G NGQ+ +                           LLLM  VDDIV+T SS  ++D V+QQLH++FALKDMG+L+FFLGI V H ++G+ L++KKY+ +IL+KT + GA+  PTPMV   KLV ++DSP FADG LYRSVVGMLQY+CI RPDL+F V KLSQ+MNSPS+ HWK +KRVLRY + TIDHGL+L+ G F LVCYSDADW + V+DRR TTGYVV+L +NP+AWCSKKQ VVSRSSSEAEYRSLAN VSELLW+KQL+DE+GL+  Q  VVWCDNTS V+MAANPTHHA++KHVEIDHHFVREKVLD  LQVNF+PS KQVADVLTK I+PKQF  FR
Sbjct:  308 DTFSPVVQATTIRTILAVTVMKGWSLRQVDVNNAFLNGELTEEIYMTQPHRFEASGPNGQQFVCKLNKALYGLRQAHRAWALLVAYGLCRLLLMAYVDDIVLTGSSNEEIDSVVQQLHHKFALKDMGQLNFFLGITVHHTSQGLFLNKKKYITEILNKTEMSGASATPTPMVSFPKLVAADDSPSFADGHLYRSVVGMLQYVCIIRPDLSFCVNKLSQYMNSPSELHWKAIKRVLRYLLGTIDHGLYLSKGQFALVCYSDADWASSVEDRRFTTGYVVFLGANPVAWCSKKQPVVSRSSSEAEYRSLANYVSELLWVKQLLDELGLSLSQPPVVWCDNTSAVSMAANPTHHAKVKHVEIDHHFVREKVLDGTLQVNFIPSDKQVADVLTKPITPKQFATFR 708
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8487591.1| (hypothetical protein CXB51_018005 [Gossypium anomalum])

HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 267/423 (63.12%), Postives = 313/423 (74.00%), Query Frame = 0 
Query:  492 NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKL-------------------------------------------------LLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            +TFSPVV+A TIR VL++AV+KGWSLRQ+DVNNAFLN +LTEEIYM QPP FE  G NGQ+L                                                 ++LLM  VDDIV+T SS  ++D V+ QLH++FALKDMG+L FFLGIEVQH  +G+ LSQKKY+L+ILHKT +  AT  PTPMV T KL  S+ SPPFAD  LYRS VGMLQYLCITRP+L+F V KLSQ+MN PS+THW+ VKRVLRY V T+D+GL  + G  E++CYSDADW + ++DRRSTTGYVVYL  NP+AWCS+KQ VVSRSSSEAEYRSLANCVSELLW+KQL+ EIGL+     VVWCDNTSTV++A NPTHHAR+KHVEIDHHFVREKVLD  LQVNFVPS +QVADVLTK I+PKQF  FR
Sbjct:   73 DTFSPVVRAATIRVVLALAVIKGWSLRQIDVNNAFLNGDLTEEIYMAQPPGFEKQGSNGQQLVCKLNKALYGLRQAPRAWFITLKQYLVTNLGFTASKADTSLFVRVSSDHIVLLMVYVDDIVITGSSTEEIDRVVHQLHSKFALKDMGQLHFFLGIEVQHTLQGLFLSQKKYILEILHKTGMADATATPTPMVTTPKLTTSDSSPPFADVHLYRSTVGMLQYLCITRPELSFCVNKLSQYMNLPSETHWRAVKRVLRYLVGTVDYGLHFSKGQAEVICYSDADWASSMEDRRSTTGYVVYLGPNPVAWCSRKQPVVSRSSSEAEYRSLANCVSELLWVKQLIGEIGLSNIPPPVVWCDNTSTVSIAENPTHHARIKHVEIDHHFVREKVLDGTLQVNFVPSAEQVADVLTKPIAPKQFESFR 495
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: ref|XP_017632665.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Gossypium arboreum])

HSP 1 Score: 511.531 bits (1316), Expect = 1.914e-171
Identity = 249/368 (67.66%), Postives = 286/368 (77.72%), Query Frame = 0 
Query:  512 MKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL--------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            MKGWSLRQVDVNNAFLN  LTEE+Y+ QPP FEV   NGQ+L+              LLLM  VDDI++T SS  ++D V+QQLH +FALKDMG+L FFL                    DILHKT + GA+  PTPMV T KLV S+DSPPFADGPLYRS+VGMLQY+CITRPDL+F V KLSQ+MN+PS+ HW  VKRVLRY + T+DHGLFL+ G FELV YS+ADW + V+DRRSTTGYV+YL SNPI WCSKKQ VVSRSSSEAEYRSLANCV+ELLW+KQL+DE+G+ PCQ+ VVWCDNTSTV++A NPTHHAR+KHVEIDHHFVR KVLD  L VNFVPS KQVADVLTK I+PKQF  FR
Sbjct:    1 MKGWSLRQVDVNNAFLNGVLTEEVYISQPPGFEVVDPNGQQLVSDHSLFIRATTESSLLLMAYVDDIIITGSSTNEIDTVVQQLHRQFALKDMGQLHFFL--------------------DILHKTGMPGASTTPTPMVSTPKLVASDDSPPFADGPLYRSIVGMLQYVCITRPDLSFCVNKLSQYMNAPSEAHWTAVKRVLRYLLGTLDHGLFLSKGQFELVGYSNADWASSVEDRRSTTGYVIYLGSNPITWCSKKQLVVSRSSSEAEYRSLANCVAELLWVKQLLDELGMPPCQSPVVWCDNTSTVSIAVNPTHHARVKHVEIDHHFVRGKVLDGTLLVNFVPSDKQVADVLTKPITPKQFVTFR 348
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8487951.1| (hypothetical protein CXB51_018012 [Gossypium anomalum])

HSP 1 Score: 528.865 bits (1361), Expect = 2.698e-170
Identity = 264/423 (62.41%), Postives = 311/423 (73.52%), Query Frame = 0 
Query:  492 NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            +TFSPVV+A TIR+VL+ AVMK W LRQVDVNNAFLN ELTEEI+M+QPP FEV    GQKL+                                                 LLLM  VDDIV+T SS V +D V++QLHN+FALKDMGRL+FFLGIEV+   +G+ LSQ+KY  +IL K  +IGA   PTPMV   KLV S++S  F DG LYRS VGMLQYLCITRPDL+F V KLSQ+MNSPSDTHW+ VKRVLRY + T+++GL  + G  +LV YSDADW + V+DRRSTTGYV+YL  NPIAWCSKKQ+VVSRSSSEAEYRSLANCVSE+LW+KQL++EIG+   QT V+WCDNTSTV+M+ANPTHHA++KHVEIDHHFVREKVLD  LQVN+VPS  QVADVLTK + PKQF +FR
Sbjct:  493 DTFSPVVRAVTIRSVLATAVMKQWQLRQVDVNNAFLNGELTEEIFMDQPPGFEVFDSAGQKLVCRLNKALYGLRQAPRAWFHTLKQYLTDMLGFHASKADPSLFIRTSSDSQLLLMAYVDDIVITGSSDVAIDDVVRQLHNKFALKDMGRLNFFLGIEVRTTPQGLYLSQRKYAQEILTKAGMIGAAATPTPMVCMPKLVASDESQAFPDGHLYRSTVGMLQYLCITRPDLSFCVNKLSQYMNSPSDTHWRAVKRVLRYLIGTLEYGLHYSQGQCKLVGYSDADWASSVEDRRSTTGYVIYLGENPIAWCSKKQSVVSRSSSEAEYRSLANCVSEVLWVKQLLEEIGVGLKQTPVIWCDNTSTVSMSANPTHHAKVKHVEIDHHFVREKVLDGTLQVNYVPSANQVADVLTKPVPPKQFAMFR 915

HSP 2 Score: 134.035 bits (336), Expect = 7.809e-28
Identity = 76/172 (44.19%), Postives = 91/172 (52.91%), Query Frame = 0 
Query:  288 SCAAHHLTNSYA-SLGEDVN-YNGP---VVANVWGPAPIFSNGFRYYVAFADAYSRYTL--------------------------------------------------GIVQRVMCPYTSEQNGLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHLINRLLSSPLG 404
            +C A HL   +     + V+ Y+ P   VVA+VWGPAP+ SNGFRYYVAF DAY+RYT                                                   GI QR  CPYTS QNGLVE KHRQI+E  LSMLAHASM + YWNDAFS A++L+NRL ++PL 
Sbjct:   39 ACVACHLGKEHRLPFSKSVSAYSAPLQLVVADVWGPAPVTSNGFRYYVAFTDAYTRYTWVYFLHRKSEVLTIFPQFHKQAERVLGVSLRTLQTDGGGEFQVLKQYLTQHGITQRFTCPYTSAQNGLVERKHRQIVETGLSMLAHASMPITYWNDAFSCAVYLLNRLPTAPLA 210
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8497686.1| (hypothetical protein CXB51_007144 [Gossypium anomalum])

HSP 1 Score: 530.791 bits (1366), Expect = 6.630e-168
Identity = 268/424 (63.21%), Postives = 316/424 (74.53%), Query Frame = 0 
Query:  492 NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKG-IVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            +TFSPVV+A TIR VL++AVMKGW+LRQVDVNNAFLN EL+EEIYM QPP FE  G +GQKL+                                                 LLLM  VDDIV+T SS  D+D V+ QLH +FALKDMG+L+FFLGI V   ++G ++L+QKKYV ++LHK  + GA+  PTPMV T KLV  + SP FAD  L+RS+VGMLQY+CITRPDL+F V KLSQ+MNSPSDTHWK +KRVLRY + TID+GL L+ G FELVCYSDADW + V+DRRST+GYVVYL S+PI WCSKKQ VVSRSSSEAEYRSLANCVSELLW+KQL++E+GL  C+  V+WCDNTSTV+MAANPTHHA++KHVEIDHHFVREKVLD  LQVNFVPS KQ+ADVLTK I+PK F  FR
Sbjct:  769 DTFSPVVRAATIRIVLAIAVMKGWALRQVDVNNAFLNGELSEEIYMTQPPGFEEVGSSGQKLVCKLHKALYGLRQAPRAWFQTLRQYLECHLGFHASKVDPSLFIRSTSGSYLLLMAYVDDIVITGSSRNDIDDVVLQLHQKFALKDMGQLNFFLGIAVHRTSQGGLLLTQKKYVAELLHKAGMSGASATPTPMVSTPKLVAIDGSPSFADQHLFRSIVGMLQYVCITRPDLSFCVNKLSQYMNSPSDTHWKALKRVLRYLIGTIDYGLLLSKGKFELVCYSDADWASSVEDRRSTSGYVVYLGSSPIVWCSKKQPVVSRSSSEAEYRSLANCVSELLWVKQLLNELGLLLCRPPVIWCDNTSTVSMAANPTHHAKVKHVEIDHHFVREKVLDGTLQVNFVPSEKQIADVLTKPITPKAFASFR 1192

HSP 2 Score: 123.635 bits (309), Expect = 1.577e-24
Identity = 87/236 (36.86%), Postives = 115/236 (48.73%), Query Frame = 0 
Query:   87 GVVDSRFFSTK-RGYCDNLASCGEVISDHEHVTIILNELSPEYESVITIVTASQVPYNVQGVTTI------------LLDAKARQQMTVLETPSSTNLVSHQSQSLVVDNGSVPEYQCTTPARGRGRGRSYGSRVQCQLCGKPVLPWMSSVASAPSTNFGPSLGWSCPSLPITSWSNLFFHNASQS-SSSSSSTPSSQACLATPTTVANSAWYPDSCAAHHLTNSYASLGEDVNYN 308
            G +  R F  K +G+C NLASCGEVISDHEHVT ILN L PEYESV+TI+TAS VPYN QG                  DA  +        PS  N+  + + S +V   S P                              +P+ ++ +S PS       GW  P  P+ +W +     +S   S++  +T   QA +ATP  V ++AWYPDS A HHLT+S +S+GE   YN
Sbjct:   13 GSLSMREFLVKIKGFCANLASCGEVISDHEHVTAILNSLPPEYESVVTIITASPVPYNAQGCQLCGKQGHLVDRCYYRFDASYKSTGYKPPPPSQANICMYGTGSSMVHWVSSP------------------------------VPFSNAASSTPS-------GWYFP--PVPNWPHPVLATSSPPVSATPPATTPPQALIATPEIVDDNAWYPDSGATHHLTHSASSVGESTTYN 209

HSP 3 Score: 113.62 bits (283), Expect = 2.040e-21
Identity = 61/137 (44.53%), Postives = 73/137 (53.28%), Query Frame = 0 
Query:  314 NVWGPAPIFSNGFRYYVAFADAYSRYTL--------------------------------------------------GIVQRVMCPYTSEQNGLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHLINRLLS 400
            N  GPAPI SNGFRYYVAF DA++RYT                                                   GIV R+ CPY+S QNG+VE KHRQI+EA LSMLAH +M + YW+DAFS+A++LINRL S
Sbjct:  347 NTSGPAPICSNGFRYYVAFTDAFTRYTWVYFLTKKSEVLTVFPLFHRRVERTLGCKLKTLQTDGGGEFQVLRSYLSLQGIVHRLSCPYSSAQNGIVERKHRQIVEAGLSMLAHTAMPLTYWHDAFSTAVYLINRLPS 483
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAA3476825.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Gossypium australe])

HSP 1 Score: 498.049 bits (1281), Expect = 1.450e-163
Identity = 240/366 (65.57%), Postives = 284/366 (77.60%), Query Frame = 0 
Query:  520 VDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL--------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            +DVNNAFLN +LT++IYMEQPP FEV G NGQ+LL                    +LLM  VDDIV+T SS V+V+ V+Q LHN+F LKDM +LSFFLG+EVQH + G+ L+QKKY+L+IL K  ++GA   PTPMV T KL  S+  PPF D  LYRS VGMLQYLCITRPDL+FYV KLSQ+MN PS+ HW  V RVLRY + T DHGL+ + G  ELVCYS+ DW + V+DR STTGYVVYL  NPIAW SKKQ+VVSRSSSEAEYRSLANCVSELLW+KQ++DEIG++ C   V+WC NTSTV++AANPTHH+R+KHVEIDHHFVREKVLD  LQVNFVPS++QV DVLTK I+PKQF  FR
Sbjct:  182 IDVNNAFLNGDLTDDIYMEQPPGFEVPGANGQQLLNFNASKADPSLFIRTSSENVVLLMVYVDDIVITGSSNVEVNSVVQHLHNKFNLKDMWQLSFFLGLEVQHTSLGVFLNQKKYILEILTKIGMVGAAATPTPMVNTPKLTASDSIPPFIDVHLYRSTVGMLQYLCITRPDLSFYVNKLSQYMNLPSEMHWLAVNRVLRYLIGTFDHGLYFSKGRIELVCYSNVDWASSVEDRLSTTGYVVYLGPNPIAWSSKKQSVVSRSSSEAEYRSLANCVSELLWVKQMIDEIGVSSCPPPVIWCHNTSTVSIAANPTHHSRIKHVEIDHHFVREKVLDGTLQVNFVPSSEQVIDVLTKPITPKQFESFR 547
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8492160.1| (hypothetical protein CXB51_009604 [Gossypium anomalum])

HSP 1 Score: 515.768 bits (1327), Expect = 6.928e-162
Identity = 259/417 (62.11%), Postives = 303/417 (72.66%), Query Frame = 0 
Query:  492 NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPK 859
            +TFSPVV+A TIR+VL+ AVMK W LRQVDVNNAFLN ELTEEI+M+Q P FEV    GQKL+                                                 LLLM  VDDIV+T SS   +D V++QLHN+FALKDMGRL+FFLGIEV+   +G+ LSQ+KY  +IL K  +IGA   PTPMV   KLV S++S  F DG LYRS VGMLQYLCITRPDL+F V KLSQ+MNSPSDTHW+ VKRVLRY + T+++GL  + G  +LV YSDADW + V+DRRSTTGYV+YL  NPIAWCSKKQAVVSRSSSEAEYRSL NCVSE+LW+KQL++EIG+   QT V+WCDNTSTV+M+ANPTHHA++KHVEIDHHFVREKVLD  LQVN+VPS  QVADVLTK I PK
Sbjct:  842 DTFSPVVRAVTIRSVLATAVMKQWQLRQVDVNNAFLNGELTEEIFMDQAPGFEVFDSAGQKLVCRLNKALYGLRQAPRAWFHTLKQYLTDMLGFHASKADPSLFIRTSSDSQLLLMAYVDDIVITGSSDAAIDDVVRQLHNKFALKDMGRLNFFLGIEVRTTPQGLYLSQRKYAQEILTKAGMIGAAATPTPMVCMPKLVASDESQAFPDGHLYRSTVGMLQYLCITRPDLSFCVNKLSQYMNSPSDTHWRAVKRVLRYLIGTLEYGLHYSQGQCKLVGYSDADWASSVEDRRSTTGYVIYLGENPIAWCSKKQAVVSRSSSEAEYRSLTNCVSEVLWVKQLLEEIGVGLKQTPVIWCDNTSTVSMSANPTHHAKVKHVEIDHHFVREKVLDGTLQVNYVPSANQVADVLTKPIPPK 1258

HSP 2 Score: 133.265 bits (334), Expect = 1.537e-27
Identity = 69/144 (47.92%), Postives = 79/144 (54.86%), Query Frame = 0 
Query:  311 VVANVWGPAPIFSNGFRYYVAFADAYSRYTL--------------------------------------------------GIVQRVMCPYTSEQNGLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHLINRLLSSPLG 404
            VVA+VWGPAP+ SNGFRYYVAF DAY+RYT                                                   GI QR  CPYTS QNGLVE KHRQI+E  LSMLAHASM + YWNDAFS A++L+NRL ++PL 
Sbjct:  416 VVADVWGPAPVTSNGFRYYVAFTDAYTRYTWVYFLHRKSEVLTIFPQFHKQAERVLGVSLQTLQTDGGGEFQVLKQYLTQHGITQRFTCPYTSAQNGLVERKHRQIVETGLSMLAHASMPITYWNDAFSCAVYLLNRLATAPLA 559
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8475425.1| (hypothetical protein CXB51_032251 [Gossypium anomalum])

HSP 1 Score: 497.278 bits (1279), Expect = 7.857e-157
Identity = 249/423 (58.87%), Postives = 297/423 (70.21%), Query Frame = 0 
Query:  492 NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            +TFSPVV+A TIR VL+VAVM+ W LRQ+DV N FLN +L E+IYM QPP F+V G  GQ L+                                                 L LM  VDDIV+T ++   +D V+ QLH++FALKDMG L+FFLGIEVQ  ++ + L+QKKY+L+IL K  ++GA    TPMV T KLV S+ SP F D  LYRSVVGMLQYLCITRPDL+F V KLSQFMNSPS+ HWK VKRVLRY + T++HGL  + G F+L CY D DW + ++DR ST GYVVYL  NPIAWCSKKQAVVSRSSSE EYRSL NCVSELLW++QL++E+G+    + VVWCDNTSTV+MAANPTHH R+KHVEIDHHFVREKVLD  LQ+NFVPST QVADVLT+ I+ K FT FR
Sbjct:  559 DTFSPVVRAVTIRIVLAVAVMQRWPLRQIDVKNTFLNGKLIEDIYMVQPPGFKVVGHAGQPLVCKLKKALYGLRQAPPAWFHTLRQFLVDQLGFHASKADPSLFVRTSSSDCLFLMVYVDDIVITSNATTAIDNVVMQLHHKFALKDMGHLNFFLGIEVQRKSQELFLNQKKYILEILKKAGMLGAAVTFTPMVSTPKLVTSDGSPSFIDSHLYRSVVGMLQYLCITRPDLSFCVNKLSQFMNSPSELHWKAVKRVLRYLIGTMEHGLCFSKGQFKLECYCDVDWASSLEDRLSTIGYVVYLGPNPIAWCSKKQAVVSRSSSEVEYRSLTNCVSELLWVRQLLEELGIQVSSSSVVWCDNTSTVSMAANPTHHTRVKHVEIDHHFVREKVLDGSLQINFVPSTNQVADVLTQPITSKHFTEFR 981

HSP 2 Score: 113.235 bits (282), Expect = 2.705e-21
Identity = 57/99 (57.58%), Postives = 65/99 (65.66%), Query Frame = 0 
Query:  311 VVANVWGPAPIFSNGFRYYVAFADAYSRYTL---------------GIVQRVMCPYTSEQNGLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHL 394
            VVANVWGP  I SNGF YY+AF D  +RYT                GI+ R  CPYTS QN LVE KHRQ++E  LSMLAHASM ++YWNDAF+S  HL
Sbjct:  235 VVANVWGPTLISSNGFLYYMAFTDTCTRYTWVYFMRQKSEVYLSQHGILHRFSCPYTSAQNVLVERKHRQLVEVGLSMLAHASMPLSYWNDAFASYSHL 333
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Match: gb|KAG8496501.1| (hypothetical protein CXB51_008983 [Gossypium anomalum])

HSP 1 Score: 480.715 bits (1236), Expect = 2.941e-155
Identity = 240/392 (61.22%), Postives = 281/392 (71.68%), Query Frame = 0 
Query:  492 NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLD 834
            +TFSPVV+A TIRTVL VAVMK W LRQVDVNNAFLN ELTEEI+M+QPPRFEV    GQKL+                                                 LLLM  VDDIV+T SS   +D V++QLH++FALKDMGRL+FFLGIEV   ++G+ L+Q+KYV +IL K  I GA   PTPMV   KLV + +S PF D  LYRS VGMLQY CITRPDL+F V KLSQ+MNSPSD HW+ VKRVLRY + T+++GL  + G F+LV YSD DW + V+DRRSTTGYV+YL  NPIAWCSKKQAVVSRSSSEAEYRSLANCVSE+LW+KQL+ EIG+   QT + WCDNTSTV+M+ANPTHHAR+KHVEIDHHFVREK L+
Sbjct:  213 DTFSPVVRAVTIRTVLVVAVMKKWKLRQVDVNNAFLNGELTEEIFMDQPPRFEVFDSAGQKLVCRLNKSLYGLCQTPRAWFHTLKQYLTDMLGFHASKADPSLFIRTSSDSQLLLMAYVDDIVITGSSGTAIDTVVRQLHSKFALKDMGRLNFFLGIEVHTTSQGMYLAQRKYVQEILTKAGITGAAATPTPMVCMPKLVAAGESQPFPDSYLYRSTVGMLQYFCITRPDLSFCVNKLSQYMNSPSDNHWRAVKRVLRYLIGTLEYGLHYSQGQFKLVGYSDTDWASSVEDRRSTTGYVLYLGENPIAWCSKKQAVVSRSSSEAEYRSLANCVSEVLWVKQLLKEIGIDLEQTPMAWCDNTSTVSMSANPTHHARVKHVEIDHHFVREKCLN 604
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A1U8I4S4_GOSHI (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium hirsutum OX=3635 GN=LOC107892647 PE=4 SV=1)

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0 
Query:  558 MTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            MTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR
Sbjct:    1 MTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 308
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6P4PQ15_GOSAR (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium arboreum OX=29729 GN=LOC108475189 PE=4 SV=1)

HSP 1 Score: 511.531 bits (1316), Expect = 9.209e-172
Identity = 249/368 (67.66%), Postives = 286/368 (77.72%), Query Frame = 0 
Query:  512 MKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL--------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            MKGWSLRQVDVNNAFLN  LTEE+Y+ QPP FEV   NGQ+L+              LLLM  VDDI++T SS  ++D V+QQLH +FALKDMG+L FFL                    DILHKT + GA+  PTPMV T KLV S+DSPPFADGPLYRS+VGMLQY+CITRPDL+F V KLSQ+MN+PS+ HW  VKRVLRY + T+DHGLFL+ G FELV YS+ADW + V+DRRSTTGYV+YL SNPI WCSKKQ VVSRSSSEAEYRSLANCV+ELLW+KQL+DE+G+ PCQ+ VVWCDNTSTV++A NPTHHAR+KHVEIDHHFVR KVLD  L VNFVPS KQVADVLTK I+PKQF  FR
Sbjct:    1 MKGWSLRQVDVNNAFLNGVLTEEVYISQPPGFEVVDPNGQQLVSDHSLFIRATTESSLLLMAYVDDIIITGSSTNEIDTVVQQLHRQFALKDMGQLHFFL--------------------DILHKTGMPGASTTPTPMVSTPKLVASDDSPPFADGPLYRSIVGMLQYVCITRPDLSFCVNKLSQYMNAPSEAHWTAVKRVLRYLLGTLDHGLFLSKGQFELVGYSNADWASSVEDRRSTTGYVIYLGSNPITWCSKKQLVVSRSSSEAEYRSLANCVAELLWVKQLLDELGMPPCQSPVVWCDNTSTVSIAVNPTHHARVKHVEIDHHFVRGKVLDGTLLVNFVPSDKQVADVLTKPITPKQFVTFR 348
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6W6C1_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium australe OX=47621 GN=EPI10_010763 PE=4 SV=1)

HSP 1 Score: 498.049 bits (1281), Expect = 6.976e-164
Identity = 240/366 (65.57%), Postives = 284/366 (77.60%), Query Frame = 0 
Query:  520 VDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL--------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            +DVNNAFLN +LT++IYMEQPP FEV G NGQ+LL                    +LLM  VDDIV+T SS V+V+ V+Q LHN+F LKDM +LSFFLG+EVQH + G+ L+QKKY+L+IL K  ++GA   PTPMV T KL  S+  PPF D  LYRS VGMLQYLCITRPDL+FYV KLSQ+MN PS+ HW  V RVLRY + T DHGL+ + G  ELVCYS+ DW + V+DR STTGYVVYL  NPIAW SKKQ+VVSRSSSEAEYRSLANCVSELLW+KQ++DEIG++ C   V+WC NTSTV++AANPTHH+R+KHVEIDHHFVREKVLD  LQVNFVPS++QV DVLTK I+PKQF  FR
Sbjct:  182 IDVNNAFLNGDLTDDIYMEQPPGFEVPGANGQQLLNFNASKADPSLFIRTSSENVVLLMVYVDDIVITGSSNVEVNSVVQHLHNKFNLKDMWQLSFFLGLEVQHTSLGVFLNQKKYILEILTKIGMVGAAATPTPMVNTPKLTASDSIPPFIDVHLYRSTVGMLQYLCITRPDLSFYVNKLSQYMNLPSEMHWLAVNRVLRYLIGTFDHGLYFSKGRIELVCYSNVDWASSVEDRLSTTGYVVYLGPNPIAWSSKKQSVVSRSSSEAEYRSLANCVSELLWVKQMIDEIGVSSCPPPVIWCHNTSTVSIAANPTHHSRIKHVEIDHHFVREKVLDGTLQVNFVPSSEQVIDVLTKPITPKQFESFR 547
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A1U8MEC4_GOSHI (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium hirsutum OX=3635 GN=LOC107936935 PE=4 SV=1)

HSP 1 Score: 464.537 bits (1194), Expect = 5.018e-153
Identity = 229/396 (57.83%), Postives = 282/396 (71.21%), Query Frame = 0 
Query:  491 ANTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVL 837
            A  F P+    TIRT+L++AVM+ W+LRQVD+NNAFLN EL+EEIYMEQPP FEV+G  GQ+L+                                                 LLLM  VDDIV+T S + DVD V++ LHN+FALKDMG LSFFLGI+VQ  A G+ LSQKKYV+++L K  + GATP PT MV T KLV+S+ S  F D  LYRS+VGMLQY+CI RPDL+F V KLSQ+M+SPSDTHWK +KRVLRY   TID+GL  T    +LVCY+DADW + VDDRRST+GYVVYL +NP+AWCSKKQ++VSRSS+EAEYRSLANCVSELLWI+QL++E+G+   +  ++WCDN+S V +A NPTHHA+MKHVEIDHHFVREK +  +L
Sbjct:   11 AQLFEPL--PSTIRTILALAVMQKWALRQVDINNAFLNGELSEEIYMEQPPGFEVSGAGGQQLVCKLNKALYGLRQAPRAWFHTLKKYLVTQLDFHASKADSSLFIRQSTGNYLLLMVYVDDIVITGSRMQDVDAVVRCLHNKFALKDMGDLSFFLGIDVQRTAHGMHLSQKKYVMELLQKVGMTGATPTPTAMVSTPKLVISDGSSLFPDVHLYRSIVGMLQYVCIARPDLSFCVNKLSQYMSSPSDTHWKAIKRVLRYLAGTIDYGLCFTASSLDLVCYADADWASSVDDRRSTSGYVVYLGANPVAWCSKKQSMVSRSSAEAEYRSLANCVSELLWIQQLLNEVGIPQSKIPIIWCDNSSAVAVAENPTHHAKMKHVEIDHHFVREKAVAGLL 404
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A1U8MG77_GOSHI (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium hirsutum OX=3635 GN=LOC107937473 PE=4 SV=1)

HSP 1 Score: 455.292 bits (1170), Expect = 1.339e-149
Identity = 226/378 (59.79%), Postives = 269/378 (71.16%), Query Frame = 0 
Query:  537 MEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            MEQPP FEV   +GQKL+                                                 LLLM  VDDIV+T SS  ++  VI  LH++FALKDMG L+FFLGI+VQH  +GI+LSQKKY++D+L KT ++ ATP PTPMV   KL  S DSPP  D  LYRSVVGMLQY+CITRPDL+F V KLSQFMN+P + HW+ +KRVLRY   TIDHGLFLT    +LVCYSDADW + ++DRRST+GYVV+L SNP+AWCSKKQ VVSRSS+EAEYRSLANCVSELLW++QL+ EIG+ P +  VVWCDN+S V++A NPTHHARMKHVEIDHHFVREK+L   LQVNFVPS +Q+ADVLTK I+PK F+ FR
Sbjct:    1 MEQPPGFEVCDSSGQKLVCKLHKALYGLRQAPRAWFQTLKQYLVDQLGFQASKADSSLFIRESDGKKLLLMVYVDDIVLTGSSDQEMADVILHLHSKFALKDMGELNFFLGIDVQHTKQGILLSQKKYIVDLLKKTGLVEATPTPTPMVSNPKLAASVDSPPLVDVHLYRSVVGMLQYVCITRPDLSFSVNKLSQFMNAPREAHWRALKRVLRYLAGTIDHGLFLTPSQLKLVCYSDADWASSIEDRRSTSGYVVFLGSNPVAWCSKKQPVVSRSSAEAEYRSLANCVSELLWLQQLLAEIGIFPSKVPVVWCDNSSAVSVAENPTHHARMKHVEIDHHFVREKILAGHLQVNFVPSDQQIADVLTKPITPKMFSTFR 378
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6P4QLI7_GOSAR (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium arboreum OX=29729 GN=LOC108488006 PE=4 SV=1)

HSP 1 Score: 443.736 bits (1140), Expect = 1.552e-146
Identity = 206/276 (74.64%), Postives = 237/276 (85.87%), Query Frame = 0 
Query:  590 MGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            MG+L FFLGI V H ++G++LSQKKY+ DILHKT + GA+  PTPMV T KLV  +DSPPFADGPLYRS+VGMLQY+CITRPDL+F V KLSQ+MN+PS+ HW  VKRVLRY + T+DHGLFL+ G FELV YSDADW + V+D RSTTGYV+YL  NPI WCSKKQ VVSRSSSEAEYRSLANCV+ELLW+KQL+DE+G+ PCQ+ VVWCDNTSTV+MAANPTHHAR+KHVEIDHHFVREKV+D  L VNFVPS KQVADVLTK I+PKQF  FR
Sbjct:    1 MGQLHFFLGISVHHTSQGLLLSQKKYITDILHKTGMSGASTTPTPMVSTPKLVAFDDSPPFADGPLYRSIVGMLQYVCITRPDLSFCVDKLSQYMNAPSEAHWTAVKRVLRYLLGTLDHGLFLSKGQFELVGYSDADWASSVEDWRSTTGYVIYLGLNPITWCSKKQPVVSRSSSEAEYRSLANCVAELLWVKQLLDELGMPPCQSPVVWCDNTSTVSMAANPTHHARVKHVEIDHHFVREKVVDGTLLVNFVPSEKQVADVLTKPITPKQFATFR 276
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A1U8NIN8_GOSHI (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium hirsutum OX=3635 GN=LOC107948774 PE=4 SV=1)

HSP 1 Score: 439.499 bits (1129), Expect = 2.066e-143
Identity = 214/378 (56.61%), Postives = 269/378 (71.16%), Query Frame = 0 
Query:  537 MEQPPRFEVAGDNGQKLL-------------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            MEQPP FEV+   GQ+L+                                                 L+LM  VDDIV+T +S  D+  V++QLH++FALKDMG LSFFLG++V+   +G++LSQKKY++++L K  ++ A   PTPM+ T KL VS++SP F D  LYRSVVGMLQY+C+TRPD++F V KLSQFMNSPSD HW+ VKRVLRY   T+DHGL+ + G  +LVCYSDADW + VDDRRS +GYVVY+  N IAWCSKKQ+VVSRSS+EAEY SLANCVSELLWIKQL+DE+G+A  +T V+WCDN+S V++A NPTHHARMKHV+IDHHF REK+L  +LQVNFVPS +Q+ADVLTK ++PK F  FR
Sbjct:    1 MEQPPGFEVSNGTGQRLVCKLNKALYGLRQAPRAWFQTLKNYLVAQLGFQVSKADSSLFIRVSAGTCLVLMVYVDDIVLTRTSAHDIGEVVRQLHSKFALKDMGHLSFFLGVDVKRTTQGLLLSQKKYIMELLQKAGMVEAAMTPTPMLNTPKLTVSDNSPLFFDIHLYRSVVGMLQYVCVTRPDISFCVNKLSQFMNSPSDNHWRAVKRVLRYLAGTLDHGLYFSKGQPDLVCYSDADWASSVDDRRSISGYVVYIGPNLIAWCSKKQSVVSRSSAEAEYHSLANCVSELLWIKQLMDEVGIAVAKTPVIWCDNSSAVSVAENPTHHARMKHVDIDHHFEREKILAGLLQVNFVPSDQQIADVLTKPVTPKNFAWFR 378
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A1U8JSX0_GOSHI (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium hirsutum OX=3635 GN=LOC107910121 PE=4 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 2.316e-141
Identity = 200/308 (64.94%), Postives = 249/308 (80.84%), Query Frame = 0 
Query:  558 MTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            M  VDDIV+T SS  D+  V+ QLH +FALKDMG L+FFLGIEVQ   +G++LSQKKYV ++L K  ++GATP PTPMV T KLV S+ SP   D  LYRSVVGMLQY+CITRP+L+F V KLSQFMNSPS+THWK +KRVLRY + T+D+  FL+ G  ELVCYSDADW + V+DRRST+GYVV+L  NPIAW SKKQ VVSRSS+EAEYRSLANCV+ELLW++QL+ E+G++  +  V+WCDN++ V++A NPT +A+MKHVEIDH FVREK+   +LQVNF+PS +Q+ADVLTK I+PK F+ FR
Sbjct:    1 MVYVDDIVLTGSSDHDMADVVLQLHKKFALKDMGELNFFLGIEVQRTTQGLLLSQKKYVSELLQKAGMVGATPTPTPMVSTPKLVTSDGSPQLVDAHLYRSVVGMLQYVCITRPELSFSVNKLSQFMNSPSETHWKAIKRVLRYLIGTMDYRRFLSTGQLELVCYSDADWASSVEDRRSTSGYVVFLGPNPIAWSSKKQPVVSRSSAEAEYRSLANCVAELLWLQQLLKEVGISSSKLPVIWCDNSAAVSVAENPTQNAKMKHVEIDHQFVREKIHAGLLQVNFIPSEQQIADVLTKPITPKMFSAFR 308
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A6P4MAU3_GOSAR (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium arboreum OX=29729 GN=LOC108462494 PE=4 SV=1)

HSP 1 Score: 432.18 bits (1110), Expect = 1.685e-140
Identity = 209/311 (67.20%), Postives = 250/311 (80.39%), Query Frame = 0 
Query:  555 LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            LLLM  VDDIV+T SS   +D V++QLH++FALKDMGRL+FFLGIEV    +G+ L Q+KY  +IL K  +IGA   PTPMV   KLVVS++S  F DG LYRS VGMLQYLCITRPDL+F V KLSQ++ SPSD HW+ VK VLRY + T+++GL  + G  +L  YSDADW + V+DRRSTTGYV+YL  NPIAWCSKKQ VVS+SSSEAEYRSLAN VSE+LW+KQL++EI +   QT ++WCDNTSTV+M+ANPTHHAR+KHVEIDHHFVREKVLD  LQVN+VPST QVADV+TK I P+QF VFR
Sbjct:   68 LLLMAYVDDIVITGSSDEAIDDVVRQLHSKFALKDMGRLNFFLGIEVHTTPQGLYLCQRKYAQEILTKAGMIGAAATPTPMVCMPKLVVSDESQAFPDGHLYRSTVGMLQYLCITRPDLSFCVNKLSQYVKSPSDNHWRAVKHVLRYLIGTLEYGLRYSQGQCKLFGYSDADWASSVEDRRSTTGYVLYLGENPIAWCSKKQVVVSKSSSEAEYRSLANYVSEVLWVKQLLEEIRVDLEQTPMIWCDNTSTVSMSANPTHHARVKHVEIDHHFVREKVLDGTLQVNYVPSTNQVADVITKPIPPRQFAVFR 378
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Match: A0A1U8HV13_GOSHI (uncharacterized mitochondrial protein AtMg00810-like OS=Gossypium hirsutum OX=3635 GN=LOC107889801 PE=4 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 9.472e-138
Identity = 200/309 (64.72%), Postives = 245/309 (79.29%), Query Frame = 0 
Query:  558 MTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKL-VVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            M  VDDI++T +S   VD V+ QLH +FALKD+G+LSFFLGIEVQH+  G++L+Q+KYV DIL KT + GA   PTPMV   KL + ++DS    D  LYRS +GMLQYLC+TRPD++F V KLSQ+MN P + HWK VKRVLRY   TIDHGLF + G F+LVCYSDADW + V+DRRSTTGYV+ L  NPIAWCSKKQ V+SRSS+EAEYRSLA+CVSE+LW++QL++E+G+       VWCDNTSTV+M+ANPT+HAR+KH+EIDHHFVREKV D  LQVNFVPS  Q+ADVLTK ++PKQF   R
Sbjct:    1 MAYVDDIILTGNSTQAVDDVVCQLHKQFALKDLGQLSFFLGIEVQHMPHGMLLTQRKYVQDILKKTGMEGAANTPTPMVSYPKLKLATSDSDQTVDERLYRSTIGMLQYLCVTRPDISFSVNKLSQYMNPPGEAHWKAVKRVLRYLAGTIDHGLFFSRGQFKLVCYSDADWASSVEDRRSTTGYVILLGPNPIAWCSKKQPVMSRSSTEAEYRSLASCVSEILWVRQLLNEVGVCMAHAPTVWCDNTSTVSMSANPTNHARVKHIEIDHHFVREKVADGSLQVNFVPSANQIADVLTKPLAPKQFVGLR 309
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. Araport11
Match: gnl|BL_ORD_ID|33807 (AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606)

HSP 1 Score: 253.447 bits (646), Expect = 9.392e-71
Identity = 147/418 (35.17%), Postives = 226/418 (54.07%), Query Frame = 0 
Query:  493 TFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEV-AGDN--------------GQK-----------------------------------LLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTN-GLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREK-VLDDVLQVNFVPSTKQVADVLTKSISP 858
            TFSPV K  +++ +L+++ +  ++L Q+D++NAFLN +L EEIYM+ PP +    GD+              G K                                   L L ++  VDDI++  ++   VD +  QL + F L+D+G L +FLG+E+   A GI + Q+KY LD+L +T ++G  P   PM   S    ++    F D   YR ++G L YL ITR D++F V KLSQF  +P   H + V ++L Y   T+  GLF ++    +L  +SDA + +  D RRST GY ++L ++ I+W SKKQ VVS+SS+EAEYR+L+    E++W+ Q   E+ L   +  +++CDNT+ + +A N   H R KH+E D H VRE+ V    L  +F    +Q  D  T+ +SP
Sbjct:  166 TFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMD-PSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQ--DGFTEYLSP 580
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. Araport11
Match: gnl|BL_ORD_ID|33806 (AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606)

HSP 1 Score: 253.447 bits (646), Expect = 9.392e-71
Identity = 147/418 (35.17%), Postives = 226/418 (54.07%), Query Frame = 0 
Query:  493 TFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEV-AGDN--------------GQK-----------------------------------LLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTN-GLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREK-VLDDVLQVNFVPSTKQVADVLTKSISP 858
            TFSPV K  +++ +L+++ +  ++L Q+D++NAFLN +L EEIYM+ PP +    GD+              G K                                   L L ++  VDDI++  ++   VD +  QL + F L+D+G L +FLG+E+   A GI + Q+KY LD+L +T ++G  P   PM   S    ++    F D   YR ++G L YL ITR D++F V KLSQF  +P   H + V ++L Y   T+  GLF ++    +L  +SDA + +  D RRST GY ++L ++ I+W SKKQ VVS+SS+EAEYR+L+    E++W+ Q   E+ L   +  +++CDNT+ + +A N   H R KH+E D H VRE+ V    L  +F    +Q  D  T+ +SP
Sbjct:  166 TFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMD-PSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQ--DGFTEYLSP 580
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. Araport11
Match: gnl|BL_ORD_ID|48304 (ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227709-228431 REVERSE LENGTH=240 | 201606)

HSP 1 Score: 177.178 bits (448), Expect = 4.070e-50
Identity = 92/227 (40.53%), Postives = 142/227 (62.56%), Query Frame = 0 
Query:  555 LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFL-TNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLW 780
            + L+  VDDI++T SS   ++++I QL + F++KD+G + +FLGI+++    G+ LSQ KY   IL+   ++   PM TP+ +  KL  S  +  + D   +RS+VG LQYL +TRPD+++ V  + Q M+ P+   + ++KRVLRY   TI HGL++  N    +  + D+DW      RRSTTG+  +L  N I+W +K+Q  VSRSS+E EYR+LA   +EL W
Sbjct:    1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. Araport11
Match: gnl|BL_ORD_ID|48256 (ATMG00240.1 | Gag-Pol-related retrotransposon family protein | ChrM:68918-69253 REVERSE LENGTH=111 | 201606)

HSP 1 Score: 63.5438 bits (153), Expect = 5.589e-12
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:  665 YLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLT-NGLFELVCYSDADWVAFVDDRRSTTGY 740
            YL ITRPDL F V +LSQF ++      + V +VL Y   T+  GLF +     +L  ++D+DW +  D RRS TG+
Sbjct:    2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGF 78
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 6.906e-96
Identity = 190/485 (39.18%), Postives = 263/485 (54.23%), Query Frame = 0 
Query:  455 VNSTVAPHVSNLVATHMSPPPPSAPV-----------NSHAMVTRSKA----------------NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRF--------------EVAG---------------------------------DNGQKLLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNG-LFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVF 864
            +N+ +  H  +LV     PPPPS  +           NS   + R KA                 TFSPV+K+ +IR VL VAV + W +RQ+DVNNAFL   LT+E+YM QPP F               + G                                   G+ ++ +L+  VDDI++T +  V +   +  L  RF++K+   L +FLGIE + V +G+ LSQ++Y LD+L +T ++ A P+ TPM  + KL + + +    D   YR +VG LQYL  TRPDL++ V +LSQ+M+ P+D HW  +KRVLRY   T DHG+FL  G    L  YSDADW    DD  ST GY+VYL  +PI+W SKKQ  V RSS+EAEYRS+AN  SEL WI  L+ E+G+      V++CDN     + ANP  H+RMKH+ +D+HF+R +V    L+V  V +  Q+AD LTK +S   F  F
Sbjct:  959 INAQIGNHTWDLVP----PPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVY-VDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTK-LPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNF 1437

HSP 2 Score: 67.0106 bits (162), Expect = 6.685e-10
Identity = 44/139 (31.65%), Postives = 60/139 (43.17%), Query Frame = 0 
Query:  311 VVANVWGPAPIFS-NGFRYYVAFADAYSRYTL--------------------------------------------------GIVQRVMCPYTSEQNGLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHLINRL 398
            + ++VW  +PI S + +RYYV F D ++RYT                                                   GI      P+T E NGL E KHR I+E  L++L+HAS+   YW  AFS A++LINRL
Sbjct:  506 IYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRL 643
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 9.296e-92
Identity = 186/486 (38.27%), Postives = 262/486 (53.91%), Query Frame = 0 
Query:  455 VNSTVAPHVSNLVATHMSPPPPS------------APVNSHAMVTRSKA----------------NTFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPP--------------RFEVAG---------------------------------DNGQKLLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNG-LFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVF 864
            +N+ +  H  +LV     PPPPS               NS   + R KA                 TFSPV+K+ +IR VL VAV + W +RQ+DVNNAFL   LT+++YM QPP              R  + G                                   G+ ++ +L+  VDDI++T +    +   +  L  RF++KD   L +FLGIE + V  G+ LSQ++Y+LD+L +T +I A P+ TPM  + KL + + +    D   YR +VG LQYL  TRPD+++ V +LSQFM+ P++ H + +KR+LRY   T +HG+FL  G    L  YSDADW    DD  ST GY+VYL  +PI+W SKKQ  V RSS+EAEYRS+AN  SE+ WI  L+ E+G+   +  V++CDN     + ANP  H+RMKH+ ID+HF+R +V    L+V  V +  Q+AD LTK +S   F  F
Sbjct:  976 INAQIGNHTWDLV-----PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVY-VDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTK-LTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNF 1454

HSP 2 Score: 67.0106 bits (162), Expect = 6.363e-10
Identity = 48/168 (28.57%), Postives = 71/168 (42.26%), Query Frame = 0 
Query:  311 VVANVWGPAPIFS-NGFRYYVAFADAYSRYTL--------------------------------------------------GIVQRVMCPYTSEQNGLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHLINRLLSSPLGRHHAHFWGILRVIKDIDVKLMMG 427
            + ++VW  +PI S + +RYYV F D ++RYT                                                   GI      P+T E NGL E KHR I+E  L++L+HAS+   YW  AF+ A++LINR L +PL +  + F  +     + D   + G
Sbjct:  527 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINR-LPTPLLQLESPFQKLFGTSPNYDKLRVFG 692
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.610e-55
Identity = 133/426 (31.22%), Postives = 213/426 (50.00%), Query Frame = 0 
Query:  494 FSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDN-----------------------------------------------GQKLLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEV--QHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKL------VVSNDSPPFADGPLYRSVVGMLQY-LCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTV 863
            FSPVVK  +IRT+LS+A      + Q+DV  AFL+ +L EEIYMEQP  FEVAG                                                  +   ++L+  VDD+++       +  +   L   F +KD+G     LG+++  +  ++ + LSQ+KY+  +L +  +  A P+ TP+    KL          +    A  P Y S VG L Y +  TRPD+A  V  +S+F+ +P   HW+ VK +LRY   T    L        L  Y+DAD    +D+R+S+TGY+       I+W SK Q  V+ S++EAEY +      E++W+K+ + E+GL   +  VV+CD+ S + ++ N  +HAR KH+++ +H++RE V D+ L+V  + + +  AD+LTK +   +F +
Sbjct:  895 FSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP-YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFEL 1318
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 2.433e-52
Identity = 133/426 (31.22%), Postives = 210/426 (49.30%), Query Frame = 0 
Query:  493 TFSPVVKAKTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNGQKLL----------------------------------------------LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWI--IGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCI-TRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGL-FLTNGLFE--LVCYSDADWVAFVDDRRSTTGYVVYLRS-NPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVFR 865
            TF+PV +  + R +LS+ +     + Q+DV  AFLN  L EEIYM  P       DN  KL                                               + ++  VDD+V+    +  ++   + L  +F + D+  +  F+GI ++     I LSQ  YV  IL K  +    A   P P  +  +L+ S++     + P  RS++G L Y+ + TRPDL   V  LS++ +  +   W+ +KRVLRY   TID  L F  N  FE  ++ Y D+DW     DR+STTGY+  +   N I W +K+Q  V+ SS+EAEY +L   V E LW+K L+  I +     + ++ DN   +++A NP+ H R KH++I +HF RE+V ++V+ + ++P+  Q+AD+ TK +   +F   R
Sbjct:  974 TFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDED---CNTPC-RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELR 1395
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.978e-49
Identity = 92/227 (40.53%), Postives = 142/227 (62.56%), Query Frame = 0 
Query:  555 LLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFL-TNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLW 780
            + L+  VDDI++T SS   ++++I QL + F++KD+G + +FLGI+++    G+ LSQ KY   IL+   ++   PM TP+ +  KL  S  +  + D   +RS+VG LQYL +TRPD+++ V  + Q M+ P+   + ++KRVLRY   TI HGL++  N    +  + D+DW      RRSTTG+  +L  N I+W +K+Q  VSRSS+E EYR+LA   +EL W
Sbjct:    1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: RL161_PLAVT (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.057e-29
Identity = 62/128 (48.44%), Postives = 80/128 (62.50%), Query Frame = 0 
Query:  656 YRSVVGMLQYL-CITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGL-FLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWI 781
            Y S VG + YL  +TRPDLA  V  LSQF + P  THW+ +KRVLRY   T  +GL F   G  +LV YSDADW   V+ RRST+GY+  L    ++W SKKQ  V+ SS+E EY +L+    E +W+
Sbjct:    6 YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 4.020e-25
Identity = 94/309 (30.42%), Postives = 137/309 (44.34%), Query Frame = 0 
Query:  520 VDVNNAFLNRELTEEIYMEQPPRF----------EVAGD---------------------------NGQKLLLLLMTD---------VDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIEVQHVAKG-IVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPFADGPLYRSVVGMLQYLCIT-RPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNG-LFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIAWCSKK-QAVVSRSSSEAEYRSLANCVSEL 778
            +DV+ AFLN  + E IY++QPP F          E+ G                             G+  L    T          VDD++V   S    D V Q+L   +++KD+G++  FLG+ +   + G I LS + Y+     ++ I       TP+   SK +    SP   D   Y+S+VG L +   T RPD+++ V  LS+F+  P   H +  +RVLRY   T    L   +G    L  Y DA   A  D   ST GYV  L   P+ W SKK + V+   S+EAEY + +  V E+
Sbjct:    1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPL-CNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVMEI 308
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.463e-11
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:  665 YLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLT-NGLFELVCYSDADWVAFVDDRRSTTGY 740
            YL ITRPDL F V +LSQF ++      + V +VL Y   T+  GLF +     +L  ++D+DW +  D RRS TG+
Sbjct:    2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGF 78
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 3.489e-7
Identity = 94/426 (22.07%), Postives = 178/426 (41.78%), Query Frame = 0 
Query:  503 IRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIY-------------------MEQPP-------RFEVAG----DNG--------QKLLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRL------SFFLGIEVQHVAK--GIVLSQKKYV--LDILHKTWIIGATPMPTPMVVTSKL-----VVSNDSPPFADGPL-YRSVVGMLQYL---CITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVD-------DRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVF 864
            I+  L +A  +   ++ +D+N+AFL  +L EEIY                   ++Q P       R  + G    DN         +   L++   VDD V+  S+   +D  I +L + F LK  G L      +  LG+++ +  +   I L+ K ++  +D  +   +        P + T K+     V+      F  G L  + ++G L Y+   C  R D+ F VKK+++ +N P +  + ++ ++++Y V   D G+      ++  C  D   +A  D       D +S  G +++   N     S K      SS+EAE  ++    ++   +K  + E+G      +V+  D+   +          + K   I    ++EK+ +  +++  +     +AD+LTK +S   F  F
Sbjct: 1366 IKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKC--RYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIH-----YDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRF 1784
[Close]
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.653e-7
Identity = 94/426 (22.07%), Postives = 178/426 (41.78%), Query Frame = 0 
Query:  503 IRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIY-------------------MEQPP-------RFEVAG----DNG--------QKLLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRL------SFFLGIEVQHVAK--GIVLSQKKYV--LDILHKTWIIGATPMPTPMVVTSKL-----VVSNDSPPFADGPL-YRSVVGMLQYL---CITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLRYPVETIDHGLFLTNGLFELVCYSDADWVAFVD-------DRRSTTGYVVYLRSNPIAWCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWCDNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVADVLTKSISPKQFTVF 864
            I+  L +A  +   ++ +D+N+AFL  +L EEIY                   ++Q P       R  + G    DN         +   L++   VDD V+  S+   +D  I +L + F LK  G L      +  LG+++ +  +   I L+ K ++  +D  +   +        P + T K+     V+      F  G L  + ++G L Y+   C  R D+ F VKK+++ +N P +  + ++ ++++Y V   D G+      ++  C  D   +A  D       D +S  G +++   N     S K      SS+EAE  ++    ++   +K  + E+G      +V+  D+   +          + K   I    ++EK+ +  +++  +     +AD+LTK +S   F  F
Sbjct: 1365 IKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKC--RYDINFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIH-----YDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRF 1783
The following BLAST results are available for this feature:
BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. NCBI nr
Analysis Date: 2022-08-11 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'B713' proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gb|KAG8482395.1|0.000e+052.21hypothetical protein CXB51_027330 [Gossypium anoma... [more]
gb|KAG8493453.1|0.000e+067.08hypothetical protein CXB51_010754 [Gossypium anoma... [more]
gb|KAG8487591.1|0.000e+063.12hypothetical protein CXB51_018005 [Gossypium anoma... [more]
ref|XP_017632665.1|1.914e-17167.66PREDICTED: uncharacterized mitochondrial protein A... [more]
gb|KAG8487951.1|2.698e-17062.41hypothetical protein CXB51_018012 [Gossypium anoma... [more]
gb|KAG8497686.1|6.630e-16863.21hypothetical protein CXB51_007144 [Gossypium anoma... [more]
gb|KAA3476825.1|1.450e-16365.57Retrovirus-related Pol polyprotein from transposon... [more]
gb|KAG8492160.1|6.928e-16262.11hypothetical protein CXB51_009604 [Gossypium anoma... [more]
gb|KAG8475425.1|7.857e-15758.87hypothetical protein CXB51_032251 [Gossypium anoma... [more]
gb|KAG8496501.1|2.941e-15561.22hypothetical protein CXB51_008983 [Gossypium anoma... [more]
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BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-11 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'B713' proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8I4S4_GOSHI0.000e+0100.00uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6P4PQ15_GOSAR9.209e-17267.66uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A5B6W6C1_9ROSI6.976e-16465.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A1U8MEC4_GOSHI5.018e-15357.83uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1U8MG77_GOSHI1.339e-14959.79uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6P4QLI7_GOSAR1.552e-14674.64uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1U8NIN8_GOSHI2.066e-14356.61uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1U8JSX0_GOSHI2.316e-14164.94uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6P4MAU3_GOSAR1.685e-14067.20uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1U8HV13_GOSHI9.472e-13864.72uncharacterized mitochondrial protein AtMg00810-li... [more]
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BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. Araport11
Analysis Date: 2022-08-11 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'B713' proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
gnl|BL_ORD_ID|338079.392e-7135.17AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |... [more]
gnl|BL_ORD_ID|338069.392e-7135.17AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |... [more]
gnl|BL_ORD_ID|483044.070e-5040.53ATMG00810.1 | DNA/RNA polymerases superfamily prot... [more]
gnl|BL_ORD_ID|482565.589e-1241.56ATMG00240.1 | Gag-Pol-related retrotransposon fami... [more]
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BLAST of genemark-Dt_09_GB713-gene-23.125-mRNA-1 vs. ExPASy Swiss-Prot
Analysis Date: 2022-08-11 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'B713' proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
POLR2_ARATH6.906e-9639.18Retrovirus-related Pol polyprotein from transposon... [more]
POLR1_ARATH9.296e-9238.27Retrovirus-related Pol polyprotein from transposon... [more]
POLX_TOBAC6.610e-5531.22Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME2.433e-5231.22Copia protein OS=Drosophila melanogaster OX=7227 G... [more]
M810_ARATH3.978e-4940.53Uncharacterized mitochondrial protein AtMg00810 OS... [more]
RL161_PLAVT4.057e-2948.44Secreted RxLR effector protein 161 OS=Plasmopara v... [more]
YCH4_YEAST4.020e-2530.42Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
M240_ARATH5.463e-1141.56Uncharacterized mitochondrial protein AtMg00240 OS... [more]
YJ41B_YEAST3.489e-722.07Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomy... [more]
YH41B_YEAST4.653e-722.07Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomy... [more]
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InterPro
Analysis Name: InterProScan Analysis for NSF v1.0 Gossypium hirsutum (AD1) 'B713' proteins
Date Performed: 2022-08-11
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 339..410
e-value: 1.4E-7
score: 33.3
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 555..635
e-value: 1.3E-12
score: 47.9
coord: 492..550
e-value: 3.0E-12
score: 46.7
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 93..301
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 93..301
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 720..859
e-value: 1.20963E-67
score: 219.262
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 491..825
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 312..404

Sequences
The following sequences are available for this feature:

mRNA sequence

>genemark-Dt_09_GB713-gene-23.125_NSF_v1 ID=genemark-Dt_09_GB713-gene-23.125_NSF_v1; Name=genemark-Dt_09_GB713-gene-23.125-mRNA-1; organism=Gossypium hirsutum; type=mRNA; length=2598bp
ATGGCAAAAGGAAATTTAAACTGCATGACATTGGCGGGTCCAGGAAATAT
GATGACAAGTCAAAAGGAAAAGGGCTACATGGCAAGAGCTTGCTGGTCGG
AGAAAAATCCTATGGAAAGTAATATTATTACTTCCAACAATGAAGAAGCT
TGGGATCTAGAGGCATTATTTGGTAGTGAAGAGAATGTTAGAGCCTTGCC
TTCTAGTTCGTCTGCTATGCAATCCACTACACCAGTAGTGGCTTTGAGTT
TCTTTGATGGTGTTGTAGATAGTCGTTTCTTTTCGACTAAAAGAGGGTAT
TGCGACAACTTGGCTAGCTGTGGAGAGGTTATCAGTGATCATGAGCACGT
TACTATTATTCTTAATGAACTGTCACCAGAATATGAATCAGTGATTACAA
TTGTTACTGCTAGCCAGGTACCTTATAATGTGCAAGGGGTCACTACTATA
CTTCTTGATGCGAAAGCTAGACAACAGATGACTGTTCTTGAGACTCCTAG
TTCAACTAATTTAGTATCTCATCAGTCTCAATCTTTGGTGGTTGACAATG
GTTCTGTACCAGAGTATCAATGTACCACACCAGCTCGAGGACGGGGACGT
GGTCGCTCGTATGGATCTCGTGTCCAGTGTCAGCTATGTGGGAAGCCTGT
TTTACCTTGGATGTCTTCCGTGGCTAGTGCACCCTCTACTAATTTCGGTC
CTTCATTAGGTTGGTCTTGTCCTTCTCTACCTATTACCAGCTGGTCTAAC
CTATTTTTTCATAATGCTTCACAGTCTAGCAGTTCTTCTTCATCAACTCC
CTCGTCTCAGGCGTGTCTTGCAACTCCTACAACAGTGGCTAACAGTGCAT
GGTATCCTGACTCGTGTGCTGCTCATCATCTCACAAATTCTTATGCTTCT
TTAGGTGAAGATGTGAATTACAATGGTCCAGTGGTTGCTAATGTTTGGGG
ACCAGCCCCGATTTTCTCAAATGGTTTTCGTTATTATGTTGCCTTTGCCG
ATGCTTATTCTAGATATACCTTGGGAATTGTTCAGCGTGTTATGTGTCCA
TATACCTCAGAGCAAAATGGACTGGTCGAGCACAAGCATCGACAAATCAT
TGAAGCTAGTCTCTCTATGCTGGCTCACGCGTCCATGCTTGTCAACTACT
GGAATGATGCTTTTAGTAGTGCAATTCATTTGATAAATCGGCTACTATCC
TCTCCCTTAGGTCGACACCATGCACATTTTTGGGGTATTCTTCGTGTCAT
AAAGGATATTGATGTCAAGCTAATGATGGGCGGATATATGTCTCATGCCA
TGCTACTTGTCGTGCCACCAGCTCGTCCAGCACATGTTGTTGTGACTGCT
CCTGTACCTGTAGTTAATTCTACTGTTGCACCACACGTTTCTAATTTGGT
TGCAACACACATGTCACCTCCACCACCGTCTGCTCCTGTTAATTCACATG
CAATGGTTACACGTAGCAAGGCGAACACTTTTAGCCCTGTAGTTAAAGCA
AAAACTATACGAACGGTTCTCTCCGTCGCTGTCATGAAAGGCTGGTCATT
GAGACAAGTTGATGTGAATAATGCGTTTCTTAATAGGGAGTTAACAGAAG
AAATATATATGGAACAACCACCCAGGTTCGAAGTAGCTGGTGACAATGGT
CAGAAACTGCTACTTTTACTCATGACTGATGTGGATGATATAGTTGTCAC
AGACAGCTCCGTTGTAGATGTAGACATAGTGATTCAACAACTTCACAATA
GGTTTGCTCTTAAAGACATGGGTAGACTTAGTTTTTTCTTGGGTATTGAA
GTACAACATGTGGCAAAGGGAATTGTGCTTAGTCAAAAGAAGTATGTTTT
AGATATACTTCATAAGACATGGATAATAGGTGCAACGCCCATGCCTACGC
CCATGGTCGTTACTTCCAAACTGGTTGTGTCAAACGATAGTCCACCATTT
GCTGATGGTCCTTTGTATCGGAGTGTTGTTGGCATGCTTCAATATTTGTG
TATTACACGACCAGACTTAGCTTTTTATGTTAAAAAACTAAGTCAGTTTA
TGAATTCCCCTAGTGATACTCATTGGAAAGTTGTTAAGCGAGTATTGAGG
TATCCTGTAGAGACTATAGATCATGGTTTGTTTCTCACGAATGGACTGTT
TGAGCTGGTATGTTATTCTGATGCTGACTGGGTTGCTTTTGTTGACGATC
GACGGTCAACCACAGGATATGTTGTTTACCTAAGGTCCAATCCAATTGCT
TGGTGTTCCAAGAAGCAAGCTGTTGTGTCTCGGTCTTCATCTGAAGCAGA
ATATCGTAGCTTAGCTAATTGTGTGTCAGAGTTGTTGTGGATAAAACAAC
TGGTAGATGAAATTGGTCTGGCACCATGTCAGACACTAGTGGTCTGGTGT
GATAATACGTCTACAGTCACCATGGCTGCCAACCCCACACATCATGCTAG
AATGAAACATGTGGAGATTGATCATCATTTTGTTCGTGAGAAGGTTCTGG
ATGATGTTTTACAGGTCAATTTTGTACCGTCTACAAAGCAAGTTGCTGAT
GTCCTCACCAAGTCGATTTCGCCAAAACAGTTCACTGTTTTTAGATAA
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protein sequence of genemark-Dt_09_GB713-gene-23.125_NSF_v1

>genemark-Dt_09_GB713-gene-23.125_NSF_v1 ID=genemark-Dt_09_GB713-gene-23.125_NSF_v1; Name=genemark-Dt_09_GB713-gene-23.125_NSF_v1; organism=Gossypium hirsutum; type=polypeptide; length=865bp
MAKGNLNCMTLAGPGNMMTSQKEKGYMARACWSEKNPMESNIITSNNEEA
WDLEALFGSEENVRALPSSSSAMQSTTPVVALSFFDGVVDSRFFSTKRGY
CDNLASCGEVISDHEHVTIILNELSPEYESVITIVTASQVPYNVQGVTTI
LLDAKARQQMTVLETPSSTNLVSHQSQSLVVDNGSVPEYQCTTPARGRGR
GRSYGSRVQCQLCGKPVLPWMSSVASAPSTNFGPSLGWSCPSLPITSWSN
LFFHNASQSSSSSSSTPSSQACLATPTTVANSAWYPDSCAAHHLTNSYAS
LGEDVNYNGPVVANVWGPAPIFSNGFRYYVAFADAYSRYTLGIVQRVMCP
YTSEQNGLVEHKHRQIIEASLSMLAHASMLVNYWNDAFSSAIHLINRLLS
SPLGRHHAHFWGILRVIKDIDVKLMMGGYMSHAMLLVVPPARPAHVVVTA
PVPVVNSTVAPHVSNLVATHMSPPPPSAPVNSHAMVTRSKANTFSPVVKA
KTIRTVLSVAVMKGWSLRQVDVNNAFLNRELTEEIYMEQPPRFEVAGDNG
QKLLLLLMTDVDDIVVTDSSVVDVDIVIQQLHNRFALKDMGRLSFFLGIE
VQHVAKGIVLSQKKYVLDILHKTWIIGATPMPTPMVVTSKLVVSNDSPPF
ADGPLYRSVVGMLQYLCITRPDLAFYVKKLSQFMNSPSDTHWKVVKRVLR
YPVETIDHGLFLTNGLFELVCYSDADWVAFVDDRRSTTGYVVYLRSNPIA
WCSKKQAVVSRSSSEAEYRSLANCVSELLWIKQLVDEIGLAPCQTLVVWC
DNTSTVTMAANPTHHARMKHVEIDHHFVREKVLDDVLQVNFVPSTKQVAD
VLTKSISPKQFTVFR
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR013103RVT_2
IPR043502DNA/RNA_pol_sf
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding