genemark-At_01-g-70.52-mRNA-1

Transcript Overview
Namegenemark-At_01-g-70.52-mRNA-1
Unique Namegenemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length912
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At01chromosomeAt01:70166656..70170936 +Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
barbarR0024Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bard3dR0029Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
bard3dR0030Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
bard3dR0040Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
bardfiR0028Gossypium aridum (D4) genome ISU_v1Gossypium aridum
bardfiR0037Gossypium aridum (D4) genome ISU_v1Gossypium aridum
bargauR0003Gossypium australe (G2) genome CRI_v1.1Gossypium australe
barganR0004Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
barganR0011Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
barghR0000Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
barghtR0000Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
barghtR0017Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
bargosR0002Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
barghzR0000Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
bargrbR0003Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
bargroR0006Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
bargroR0069Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
bargrhR0002Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
bargrhR0088Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
bargtiR0032Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
barhwR0003Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
barhnR0004Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
barhnR0028Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
bartoR0000Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
barhzR0000Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
barhzR0016Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
barndmR0000Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
barndmR0016Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwR0002Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
bartwR0021Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
barjmbR0000Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
barpscR0002Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
barpscR0018Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
genemark-At_01-proG-70.52-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
genemark-At_01-g-70.52genemark-At_01-g-70.52_NSF-Bar32_v1Gossypium hirsutumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
genemark-At_01-g-70.52-mRNA-1:exon:1793_NSF-Bar32_v1genemark-At_01-g-70.52-mRNA-1:exon:1793_NSF-Bar32_v1Gossypium hirsutumexon
genemark-At_01-g-70.52-mRNA-1:exon:1794_NSF-Bar32_v1genemark-At_01-g-70.52-mRNA-1:exon:1794_NSF-Bar32_v1Gossypium hirsutumexon
genemark-At_01-g-70.52-mRNA-1:exon:1795_NSF-Bar32_v1genemark-At_01-g-70.52-mRNA-1:exon:1795_NSF-Bar32_v1Gossypium hirsutumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
genemark-At_01-g-70.52-mRNA-1:cds_NSF-Bar32_v1genemark-At_01-g-70.52-mRNA-1:cds_NSF-Bar32_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
genemark-At_01-g-70.52-mRNA-1genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1-proteinGossypium hirsutumpolypeptide
genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAA3487887.1| (reverse transcriptase [Gossypium australe])

HSP 1 Score: 509.605 bits (1311), Expect = 1.450e-173
Identity = 261/348 (75.00%), Postives = 276/348 (79.31%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAIDLRSGYYQLRVKDSDILKTASRT---------------------------------------------SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELKSQLQELTDRGFARPSFSPW  PVLFVKKKDGTMR+CIDYRQLNK  IDLRSGYYQLRVKDSDI KTA RT                                             +KCEFWL  V FLGHIVSAS IRVDP+KI AIL+WKP +NVSEVRSFLGLAGYY+RFVK FS IAT LT+LLQKDV+FEWS+ CQKSFD+LKTL+TEA VLVQPESGKEFV+YSDAS NGLGC LMQEGKV+AYA RQLKPHEKNY THDLELAAIVFALKIW HYL+GEKCH+FSDHK LKYLMTQKDLNLRQRRWLELLKDYE VIDYH  KANVVA ALS
Sbjct:  118 MAPTELKELKSQLQELTDRGFARPSFSPWGAPVLFVKKKDGTMRMCIDYRQLNK--IDLRSGYYQLRVKDSDIPKTAFRTRPYLDRFVVVFIDDILIYSHDENEHAEHLKIVLQTLREKQLYTKFNKCEFWLHKVSFLGHIVSASGIRVDPSKIFAILNWKPPKNVSEVRSFLGLAGYYRRFVKGFSTIATLLTRLLQKDVRFEWSDKCQKSFDQLKTLITEAQVLVQPESGKEFVLYSDASFNGLGCVLMQEGKVIAYALRQLKPHEKNYPTHDLELAAIVFALKIWRHYLYGEKCHIFSDHKSLKYLMTQKDLNLRQRRWLELLKDYEFVIDYHPGKANVVAYALS 463
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAG8485863.1| (hypothetical protein CXB51_019210 [Gossypium anomalum])

HSP 1 Score: 505.753 bits (1301), Expect = 1.307e-163
Identity = 255/358 (71.23%), Postives = 280/358 (78.21%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAI-------------------------DLRSGYYQLRVKDSDILKTASRT------------------------------SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQEL DRGFARPSFSPW  PVLFVKKKDGT+R+CIDYRQLNKV I                         DLRS YYQLRV+DSDI KTA RT                              SKCEFWLR V FLGH+VSAS IRVDP+KI+AIL+WKP RN++EVRSFLGLAGYY+RFVK FS IATP+T+LLQKDVKF WS+ CQ+SFD+LKT LTEAPVLVQPESGKEFV++SDASL GLGC LMQEG+VVAYASRQLKPHEKNY THDLELAAIVFALKIW HYLFGE+CH++SDHK LKYLMTQ++LNLRQRRWLELLKDYELVIDYH  KANVVA+ALS
Sbjct: 1157 MAPTELKELKTQLQELMDRGFARPSFSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIKNIYPLPRIDDLFDQLKGASVFSKIDLRSSYYQLRVRDSDIPKTAFRTRHGHYEFLVMPFGLTNAPAILRDKQLYAKFSKCEFWLREVSFLGHVVSASGIRVDPSKITAILNWKPPRNITEVRSFLGLAGYYRRFVKGFSTIATPMTRLLQKDVKFVWSKKCQRSFDQLKTYLTEAPVLVQPESGKEFVIFSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVYSDHKSLKYLMTQRELNLRQRRWLELLKDYELVIDYHPGKANVVADALS 1514

HSP 2 Score: 168.318 bits (425), Expect = 1.091e-42
Identity = 110/332 (33.13%), Postives = 163/332 (49.10%), Query Frame = 0 
Query:   18 DRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAI-------------------------DLRSGYYQLRVKDSDILKTASRTSKC--EFWLRGVG------------------FLGHIVSASEIRVDPTKISAILDW-KPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            ++G+ R S SP   PVL V KKDGT R+C+D R +NK+ I                         DL+SGY+Q+R+++ D  KTA +T     E+ +   G                  F+G +VSA  + VD  KI AI DW +P                               T + QK+  F W++  +KSF ++K  LT AP+L  P+  K F +  DAS  G+G  L Q+G+ +AY S +L     NY  +D E+ A++  L+ W HYL+ ++  + SDH+ LK++  Q  LN R  +W+E L+ +  VI Y   K N+VA+ALS
Sbjct:    2 EKGYIRESLSPCVVPVLLVPKKDGTWRMCVDCRAVNKITIKYRHPIPRLDDMLDELSGSRVFSKFDLKSGYHQIRMREGDEWKTAFKTKHGLYEWLVMPFGLTNALSTFMRLMNHVLRPFIGFVVSADGLEVDQEKIKAIQDWPRP-------------------------------TSVTQKNSSFIWNDEHEKSFIKIKDCLTNAPLLALPDFSKTFEIECDASGIGIGAVLTQDGRPMAYFSEKLNGAVLNYPVYDKEMYALIRTLETWQHYLWPKEFVIHSDHEALKHIKGQHKLNRRHAKWVEYLESFPYVIKYKKGKDNIVADALS 302
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAG8498362.1| (hypothetical protein CXB51_006995 [Gossypium anomalum])

HSP 1 Score: 494.197 bits (1271), Expect = 1.665e-163
Identity = 252/362 (69.61%), Postives = 275/362 (75.97%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAI-------------------------DLRSGYYQLRVKDSDILKTASRTS----------------------------------KCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQEL DRGFARPSFSPW  PVLFVKKKDGTM++CIDYRQLNK+ I                         DLRSGYYQLRV +SDI K+A RT                                   KCEFWLR V FLGH+VS S IRVDP+K+SAI+DW+P RNV+EVRSFLGLAGYY+RFVK FS+IAT +TKLLQKDVKFEWSE CQKSFDRLKT LTEAPVLVQPESGKEFV+YSD SL GLGC LMQEG+VVAYASRQLKPHEKNY THDLELAAI+FALKI  HYLF E+CH++SDHK LKYLMTQ+DLNLRQR WLELLKDYELVIDYH  KANVVA+ALS
Sbjct:  133 MAPTELKELKTQLQELMDRGFARPSFSPWGAPVLFVKKKDGTMKMCIDYRQLNKMTIKNKYPLPRIDDLFDQLKGASVFSKIDLRSGYYQLRVLESDIPKSAFRTRYGHYEFLVMPFGLTNAPAVFMNMMNRIFRQYLDRKCEFWLREVSFLGHVVSVSSIRVDPSKVSAIIDWRPPRNVTEVRSFLGLAGYYRRFVKGFSMIATLMTKLLQKDVKFEWSEKCQKSFDRLKTYLTEAPVLVQPESGKEFVIYSDTSLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIIFALKIRRHYLFRERCHVYSDHKSLKYLMTQRDLNLRQRPWLELLKDYELVIDYHPGKANVVADALS 494
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAG8502587.1| (hypothetical protein CXB51_000034 [Gossypium anomalum])

HSP 1 Score: 471.085 bits (1211), Expect = 2.399e-162
Identity = 237/298 (79.53%), Postives = 253/298 (84.90%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAIDLRSGYYQLRVKDSDILKTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVV 298
            MAPTELKELKSQLQELTDRGFARPSFSPW  PVLFVKKKDGTMR+CIDY QLNKV          LR K     +  ++ SKCEFWLR VGFLGHIV AS IRVD +KI AI++WKP RNVSEVR+FLGLAGYY+  VK FS+IATPLTKLLQKDVKFEWSE CQ SFD+LK  LTEAPVLVQPESGKEFV+YSDASL GLGC LMQEGKV+AYASRQLKPHEKNY THDLELAAIVF LKIW HYLFGEKCH+FSDHK LKYLM QKDLNLRQRRWLELLKDY+LVIDYH  KAN +
Sbjct:    1 MAPTELKELKSQLQELTDRGFARPSFSPWGTPVLFVKKKDGTMRMCIDYCQLNKVTT--------LRDK-----QLYAKFSKCEFWLREVGFLGHIVLASGIRVDSSKILAIMNWKPPRNVSEVRNFLGLAGYYR--VKGFSMIATPLTKLLQKDVKFEWSEKCQNSFDQLKAFLTEAPVLVQPESGKEFVIYSDASLIGLGCVLMQEGKVIAYASRQLKPHEKNYPTHDLELAAIVFTLKIWRHYLFGEKCHVFSDHKSLKYLMKQKDLNLRQRRWLELLKDYKLVIDYHPGKANQI 283
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAG8502445.1| (hypothetical protein CXB51_000382 [Gossypium anomalum])

HSP 1 Score: 483.797 bits (1244), Expect = 3.445e-161
Identity = 251/369 (68.02%), Postives = 271/369 (73.44%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------------------------IDLRSGYYQLRVKD------------------SDIL-----------------------KTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELKSQLQ+LT+RGFARPSFS W  PVLFVKKKDGTMR+CIDYRQLNKV                          IDLRSGYYQLRV+                    DIL                       +  ++ +KCEFWLR VGFLGHIVSAS IRVDP+KISAI+DWKP RNVSEV SFLGLAGYY+RFVK FS+I TPLTK LQKDVKFEWSE CQ +FD+LK LLTEAP+LVQPESGKEFV+YSDA L GLGC +MQEGKV+AYASR LKPHEKNYLTH LEL AIVFALKIW HYLF EKCH+FSDHK LKYLM QKDLNLRQRRWLELLKDYELVIDYH  K NVVA+ALS
Sbjct:  520 MAPTELKELKSQLQKLTNRGFARPSFSSWGAPVLFVKKKDGTMRMCIDYRQLNKVTVKNKYPLPRIDDLFDQLKGATMFSKIDLRSGYYQLRVRTLTYRKPLLERDQFFVVFIDDILIYSRNEYEHAEHLRLVLQTLRDKQLYAKFNKCEFWLREVGFLGHIVSASGIRVDPSKISAIMDWKPPRNVSEVHSFLGLAGYYRRFVKGFSMIVTPLTKSLQKDVKFEWSEKCQNNFDQLKALLTEAPLLVQPESGKEFVIYSDALLIGLGCVMMQEGKVIAYASRLLKPHEKNYLTHGLELVAIVFALKIWRHYLFSEKCHVFSDHKSLKYLMRQKDLNLRQRRWLELLKDYELVIDYHPGKKNVVADALS 888
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAA3456998.1| (DNA/RNA polymerases superfamily protein [Gossypium australe])

HSP 1 Score: 482.641 bits (1241), Expect = 3.540e-157
Identity = 246/358 (68.72%), Postives = 272/358 (75.98%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------------------------IDLRSGYYQLRVKD-------SDIL-----------------------KTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQEL+D+GF RP FSPW  PVLFVKKKDGT+R+CIDYRQLNK                           IDLRSGYYQLR  D        DIL                       +  ++ SKCEFWLR V FLGH+VSAS IRVDP K+SAILDW P RN+SEVRSFLGLAGYY+RFVK FS+IA+P+TKLLQK+VKFEWS  CQKSFD+LKTLLTEAPVLVQPESGKE+VV+SD SLNGLGC L+QEGKVVAYASRQLKP E+NY  HDLELAAIVFALKIW HYLFGEKCH++SDHK LKYLMTQKDLNLRQRRWLELLKDYELV +YH  KAN+VA+ALS
Sbjct:  504 MAPTELKELKAQLQELSDKGFGRPRFSPWGTPVLFVKKKDGTLRMCIDYRQLNKTTVKNKYPLPCIDDLFDQLKGASVFSKIDLRSGYYQLRYLDRFVVVFIDDILVYSRDETEHDEHLRLVLQIFCDKQLYAKFSKCEFWLREVSFLGHVVSASGIRVDPGKVSAILDWTPPRNISEVRSFLGLAGYYRRFVKGFSMIASPMTKLLQKNVKFEWSGKCQKSFDQLKTLLTEAPVLVQPESGKEYVVFSDVSLNGLGCVLIQEGKVVAYASRQLKPRERNYPFHDLELAAIVFALKIWGHYLFGEKCHIYSDHKSLKYLMTQKDLNLRQRRWLELLKDYELVSNYHPGKANIVADALS 861
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAA3469597.1| (Retrotransposable element Tf2 [Gossypium australe])

HSP 1 Score: 463.766 bits (1192), Expect = 5.714e-156
Identity = 228/303 (75.25%), Postives = 259/303 (85.48%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAIDLRSGYYQLRVKDSDILKTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQELTD+GFARPSFSPW  PVLFVKKKDG+MR+CIDY QLNK           LRVKDS + KT  RT       R VGFLGHIVS   IRVDP+KI AI+DWKP ++V+EVRSFLGLAGYY+RF+K FS+IAT +T+LLQKDVKFEW+E CQ+SF+RLK LLTEAP+LVQPE GKEF+VYSDASLNGLGC LMQ+GKV+AYASRQLKPHEKNY THDLELAAIVFA KIW H+L+GE+C +F+DHK LKYLMTQK+LN RQ RWLEL+KDYELVIDYHLRKAN+VA+ALS
Sbjct:   56 MAPTELKELKAQLQELTDKGFARPSFSPWGAPVLFVKKKDGSMRLCIDYWQLNK-----------LRVKDSYVPKTPFRT-------REVGFLGHIVSGDGIRVDPSKILAIVDWKPPKDVTEVRSFLGLAGYYRRFLKEFSMIATQMTRLLQKDVKFEWTEKCQRSFERLKALLTEAPILVQPELGKEFMVYSDASLNGLGCVLMQKGKVIAYASRQLKPHEKNYPTHDLELAAIVFAPKIWRHHLYGERCRVFTDHKSLKYLMTQKELNFRQWRWLELIKDYELVIDYHLRKANMVADALS 340
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAG8496934.1| (hypothetical protein CXB51_008104 [Gossypium anomalum])

HSP 1 Score: 449.899 bits (1156), Expect = 1.285e-154
Identity = 229/327 (70.03%), Postives = 257/327 (78.59%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAIDLRSGYYQLRVKD-------SDIL-----------------------KTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANV 297
            MAP ELKELK+QL++LTDRGFARPSFSPW  PVLFVKKKDGTMR+CIDYRQLNKV I  ++ Y  L+  D        DIL                       +  ++ SKCEFWLR V FLGH+VSAS IRVDP+KI AILDWKP RN++EV+SFLGL GYY+RFVK FS+IATP+TKLLQKDVKF+WSE CQKSFD       EAPVLVQPESGKEF +YSDASL GLGC LMQEG+VVAYASRQLKPHEKNY  HDLELAA+VFALKIW HYLFGE+CH++SDHK LKYL+TQKDLNLRQ+ WLELLKDYE VI+YH RKANV
Sbjct:  118 MAPMELKELKTQLKKLTDRGFARPSFSPWGAPVLFVKKKDGTMRMCIDYRQLNKVKI--KNKYPLLQYLDRFVVVFIDDILIYSRDETEHAEYLRLVLQILRDKQLYAKFSKCEFWLREVSFLGHVVSASGIRVDPSKILAILDWKPPRNITEVQSFLGLTGYYRRFVKGFSMIATPMTKLLQKDVKFKWSEKCQKSFD-------EAPVLVQPESGKEFFIYSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPNHDLELAALVFALKIWRHYLFGERCHVYSDHKSLKYLITQKDLNLRQKCWLELLKDYEFVINYHPRKANV 435
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAG8490951.1| (hypothetical protein CXB51_014087 [Gossypium anomalum])

HSP 1 Score: 472.241 bits (1214), Expect = 2.375e-154
Identity = 233/316 (73.73%), Postives = 265/316 (83.86%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------IDLRSGYYQLRVKDSDILKTASRTSKCEFWLRGVGF---LGHIVS---ASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAP EL ELKSQLQELTD+GF RPSFSPW  PVLFVKKKDG+MR+C+DYRQLNK+        IDLRSGYYQLRVK+SD+ KTA R S  +    G+G    L H +       I+VDP+KISAI+DWKP +NV+EVRSF+GLAGYY+RFV  FS+IA P+T+LL+KDVKFEW+E CQKSF+ LK LLTEAPVLVQPESGKEFVVYSDASLNGLGC LMQEGKVVAYASRQLKPHE+NY THDLELAA+VFALKIW HYL+GE C +++D K LKYLM+QKDLNLRQRRWLELL+DYELVIDYH  KANVVA+ALS
Sbjct:  359 MAPAELNELKSQLQELTDKGFVRPSFSPWGAPVLFVKKKDGSMRLCVDYRQLNKLKGATWFSKIDLRSGYYQLRVKESDVPKTAFRPSFGQA-SSGIGIGRRLNHTIRKTFGDGIQVDPSKISAIVDWKPPKNVTEVRSFMGLAGYYRRFVNGFSIIAAPITRLLRKDVKFEWTEECQKSFEELKKLLTEAPVLVQPESGKEFVVYSDASLNGLGCVLMQEGKVVAYASRQLKPHERNYPTHDLELAAVVFALKIWRHYLYGETCRVYTDRKSLKYLMSQKDLNLRQRRWLELLEDYELVIDYHPGKANVVADALS 673
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Match: gb|KAA3470642.1| (DNA/RNA polymerases superfamily protein [Gossypium australe])

HSP 1 Score: 463.381 bits (1191), Expect = 3.710e-154
Identity = 237/380 (62.37%), Postives = 277/380 (72.89%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------------------------IDLRSGYYQLRVKDSDILKTA----------------------------------------------------SRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQELTD+GFAR SFSPW   VLFVKKKDG+MR+ ID+RQLNKV                          IDLRSGYYQLRV+DSD+ KTA                                                    ++ SK EFWL+ V FLGHIVS +E+RVDP+KISAI+DWKPL+NV+EVRSFLGLAGYYKRF K FS+IAT +T+LLQKDV+F+W+E CQ+SF+RLK LLTEA +LVQPE G+EFVVYSDAS+NGLGC L+QEGKV+AYA RQLKPH+KNYLTHDLEL AIVFA+KIW H+L+GE+C +F+DHK LKYLMTQK+LNLRQRRWLEL+KDYELVIDYH RKA+VVA+ALS
Sbjct:  400 MAPTELKELKAQLQELTDKGFARLSFSPWGALVLFVKKKDGSMRLYIDHRQLNKVTVKNKYPLPRIDDLFDQLKGATLFSKIDLRSGYYQLRVEDSDVSKTALWTRYGHYEFLPYLDKFVVVFIDDILIYSQGENEHAKHLKTVLQILRDEQLYAKFSKSEFWLKEVIFLGHIVSGNEMRVDPSKISAIVDWKPLKNVTEVRSFLGLAGYYKRFFKRFSMIATSMTRLLQKDVRFDWTEKCQQSFERLKALLTEALILVQPELGREFVVYSDASMNGLGCVLIQEGKVIAYAFRQLKPHKKNYLTHDLELVAIVFAIKIWKHHLYGERCRIFTDHKSLKYLMTQKELNLRQRRWLELIKDYELVIDYHPRKADVVADALS 779
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6X4R5_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_031685 PE=4 SV=1)

HSP 1 Score: 509.605 bits (1311), Expect = 6.977e-174
Identity = 261/348 (75.00%), Postives = 276/348 (79.31%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAIDLRSGYYQLRVKDSDILKTASRT---------------------------------------------SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELKSQLQELTDRGFARPSFSPW  PVLFVKKKDGTMR+CIDYRQLNK  IDLRSGYYQLRVKDSDI KTA RT                                             +KCEFWL  V FLGHIVSAS IRVDP+KI AIL+WKP +NVSEVRSFLGLAGYY+RFVK FS IAT LT+LLQKDV+FEWS+ CQKSFD+LKTL+TEA VLVQPESGKEFV+YSDAS NGLGC LMQEGKV+AYA RQLKPHEKNY THDLELAAIVFALKIW HYL+GEKCH+FSDHK LKYLMTQKDLNLRQRRWLELLKDYE VIDYH  KANVVA ALS
Sbjct:  118 MAPTELKELKSQLQELTDRGFARPSFSPWGAPVLFVKKKDGTMRMCIDYRQLNK--IDLRSGYYQLRVKDSDIPKTAFRTRPYLDRFVVVFIDDILIYSHDENEHAEHLKIVLQTLREKQLYTKFNKCEFWLHKVSFLGHIVSASGIRVDPSKIFAILNWKPPKNVSEVRSFLGLAGYYRRFVKGFSTIATLLTRLLQKDVRFEWSDKCQKSFDQLKTLITEAQVLVQPESGKEFVLYSDASFNGLGCVLMQEGKVIAYALRQLKPHEKNYPTHDLELAAIVFALKIWRHYLYGEKCHIFSDHKSLKYLMTQKDLNLRQRRWLELLKDYEFVIDYHPGKANVVAYALS 463
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6UIF8_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_003733 PE=4 SV=1)

HSP 1 Score: 482.641 bits (1241), Expect = 1.703e-157
Identity = 246/358 (68.72%), Postives = 272/358 (75.98%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------------------------IDLRSGYYQLRVKD-------SDIL-----------------------KTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQEL+D+GF RP FSPW  PVLFVKKKDGT+R+CIDYRQLNK                           IDLRSGYYQLR  D        DIL                       +  ++ SKCEFWLR V FLGH+VSAS IRVDP K+SAILDW P RN+SEVRSFLGLAGYY+RFVK FS+IA+P+TKLLQK+VKFEWS  CQKSFD+LKTLLTEAPVLVQPESGKE+VV+SD SLNGLGC L+QEGKVVAYASRQLKP E+NY  HDLELAAIVFALKIW HYLFGEKCH++SDHK LKYLMTQKDLNLRQRRWLELLKDYELV +YH  KAN+VA+ALS
Sbjct:  504 MAPTELKELKAQLQELSDKGFGRPRFSPWGTPVLFVKKKDGTLRMCIDYRQLNKTTVKNKYPLPCIDDLFDQLKGASVFSKIDLRSGYYQLRYLDRFVVVFIDDILVYSRDETEHDEHLRLVLQIFCDKQLYAKFSKCEFWLREVSFLGHVVSASGIRVDPGKVSAILDWTPPRNISEVRSFLGLAGYYRRFVKGFSMIASPMTKLLQKNVKFEWSGKCQKSFDQLKTLLTEAPVLVQPESGKEYVVFSDVSLNGLGCVLIQEGKVVAYASRQLKPRERNYPFHDLELAAIVFALKIWGHYLFGEKCHIYSDHKSLKYLMTQKDLNLRQRRWLELLKDYELVSNYHPGKANIVADALS 861
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6VKP0_9ROSI (Retrotransposable element Tf2 OS=Gossypium australe OX=47621 GN=EPI10_015368 PE=4 SV=1)

HSP 1 Score: 463.766 bits (1192), Expect = 2.749e-156
Identity = 228/303 (75.25%), Postives = 259/303 (85.48%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAIDLRSGYYQLRVKDSDILKTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQELTD+GFARPSFSPW  PVLFVKKKDG+MR+CIDY QLNK           LRVKDS + KT  RT       R VGFLGHIVS   IRVDP+KI AI+DWKP ++V+EVRSFLGLAGYY+RF+K FS+IAT +T+LLQKDVKFEW+E CQ+SF+RLK LLTEAP+LVQPE GKEF+VYSDASLNGLGC LMQ+GKV+AYASRQLKPHEKNY THDLELAAIVFA KIW H+L+GE+C +F+DHK LKYLMTQK+LN RQ RWLEL+KDYELVIDYHLRKAN+VA+ALS
Sbjct:   56 MAPTELKELKAQLQELTDKGFARPSFSPWGAPVLFVKKKDGSMRLCIDYWQLNK-----------LRVKDSYVPKTPFRT-------REVGFLGHIVSGDGIRVDPSKILAIVDWKPPKDVTEVRSFLGLAGYYRRFLKEFSMIATQMTRLLQKDVKFEWTEKCQRSFERLKALLTEAPILVQPELGKEFMVYSDASLNGLGCVLMQKGKVIAYASRQLKPHEKNYPTHDLELAAIVFAPKIWRHHLYGERCRVFTDHKSLKYLMTQKELNFRQWRWLELIKDYELVIDYHLRKANMVADALS 340
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6VNB3_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_016332 PE=4 SV=1)

HSP 1 Score: 463.381 bits (1191), Expect = 1.785e-154
Identity = 237/380 (62.37%), Postives = 277/380 (72.89%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------------------------IDLRSGYYQLRVKDSDILKTA----------------------------------------------------SRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQELTD+GFAR SFSPW   VLFVKKKDG+MR+ ID+RQLNKV                          IDLRSGYYQLRV+DSD+ KTA                                                    ++ SK EFWL+ V FLGHIVS +E+RVDP+KISAI+DWKPL+NV+EVRSFLGLAGYYKRF K FS+IAT +T+LLQKDV+F+W+E CQ+SF+RLK LLTEA +LVQPE G+EFVVYSDAS+NGLGC L+QEGKV+AYA RQLKPH+KNYLTHDLEL AIVFA+KIW H+L+GE+C +F+DHK LKYLMTQK+LNLRQRRWLEL+KDYELVIDYH RKA+VVA+ALS
Sbjct:  400 MAPTELKELKAQLQELTDKGFARLSFSPWGALVLFVKKKDGSMRLYIDHRQLNKVTVKNKYPLPRIDDLFDQLKGATLFSKIDLRSGYYQLRVEDSDVSKTALWTRYGHYEFLPYLDKFVVVFIDDILIYSQGENEHAKHLKTVLQILRDEQLYAKFSKSEFWLKEVIFLGHIVSGNEMRVDPSKISAIVDWKPLKNVTEVRSFLGLAGYYKRFFKRFSMIATSMTRLLQKDVRFDWTEKCQQSFERLKALLTEALILVQPELGREFVVYSDASMNGLGCVLIQEGKVIAYAFRQLKPHKKNYLTHDLELVAIVFAIKIWKHHLYGERCRIFTDHKSLKYLMTQKELNLRQRRWLELIKDYELVIDYHPRKADVVADALS 779
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6X052_9ROSI (DNA/RNA polymerases superfamily protein OS=Gossypium australe OX=47621 GN=EPI10_031385 PE=4 SV=1)

HSP 1 Score: 466.463 bits (1199), Expect = 2.171e-154
Identity = 234/327 (71.56%), Postives = 265/327 (81.04%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------------------------IDLRSGYYQLRVKDSDILKTASRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEAL 302
            MAPTELKELK+QLQELTD+GFA  SFS W   +LFVKKK G+MR+CIDY+QLNKV                          IDLRSGYYQLRVKD D+ KTA RT K EFWL+ VGFLGHIVS   IRVDP+KISAI+DWK  RNV+EVRSFLGLAGYY+RFVK FS+IAT +T+LLQKDVKF+W+E CQ++F++LK LLT+APV VQPESG+EFVVYSDASLNGLGC LMQEGKV+AYASRQL P EKNY THDLELAAIVFALKIW H+L+ +KC +F+DHK LKYLMTQKDLNLRQR WLEL+KDYELVIDYH  K NVVA+A 
Sbjct:  488 MAPTELKELKAQLQELTDKGFAILSFSLWGALILFVKKKYGSMRLCIDYQQLNKVTVKNKYPLPRINDLFDQLKGVTVFSKIDLRSGYYQLRVKDLDVPKTAFRTRKSEFWLKEVGFLGHIVSGDGIRVDPSKISAIVDWKLPRNVTEVRSFLGLAGYYRRFVKGFSMIATLMTRLLQKDVKFDWTEKCQQNFEKLKALLTKAPVSVQPESGREFVVYSDASLNGLGCVLMQEGKVIAYASRQLMPDEKNYSTHDLELAAIVFALKIWRHHLYRKKCQIFTDHKSLKYLMTQKDLNLRQRMWLELIKDYELVIDYHPGKVNVVADAF 814
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6VX34_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_023980 PE=4 SV=1)

HSP 1 Score: 444.891 bits (1143), Expect = 1.925e-150
Identity = 239/368 (64.95%), Postives = 264/368 (71.74%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAI--------------------DLRSGYYQLRVKDSDILKTASRT--SKCEFWLRGVGFLGH--------------------IVSASEIRV---DPT--------------------KISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPT+LKELKSQLQELTDRGFAR SF PW   VLFVKKK GTMR+CI+YRQLNKV I                    DLRSGYYQLRVK+SD+ KTA RT     EF +   G                        +V   +I +   D T                    KIS IL+WKP RNVSEVRSFLGL+GY +RFVK F +IATPL KLLQKDVKFEWSE C +SF++LK LLTEAPVLVQPESGKEF+VYSDASLNGLGC LMQEGKV+AYASRQLKPH+KNY THDLELAAIVF LK+WHHYLFGEKCH+++DHK LKYLMTQK+LNLRQRRWLELLKDYELVIDYHL KANVVA+ALS
Sbjct:  243 MAPTKLKELKSQLQELTDRGFARQSFLPWGALVLFVKKKYGTMRMCINYRQLNKVTIKNKYPLPHIDDLGATLFSKIDLRSGYYQLRVKESDVPKTAFRTRYGHYEFLVMPFGLTNAPAVFMDLMNRIFRPYLDRFVVVFIDDILIYSCDETVYVRNSCMLSLANVNFGCVSKISTILEWKPPRNVSEVRSFLGLSGYDRRFVKGFLMIATPLMKLLQKDVKFEWSEKCHQSFEQLKALLTEAPVLVQPESGKEFIVYSDASLNGLGCVLMQEGKVIAYASRQLKPHKKNYPTHDLELAAIVFVLKVWHHYLFGEKCHIYTDHKSLKYLMTQKELNLRQRRWLELLKDYELVIDYHLGKANVVADALS 610
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6U6B7_9ROSI (DNA/RNA polymerases superfamily protein OS=Gossypium australe OX=47621 GN=EPI10_009466 PE=4 SV=1)

HSP 1 Score: 447.588 bits (1150), Expect = 1.572e-147
Identity = 231/362 (63.81%), Postives = 267/362 (73.76%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVA-------------------------IDLRSGYYQLRVKDSDILKTA----------------------------------SRTSKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPT+LKELK+QLQEL D+GFAR S+S W  PVLFVKKKDG++R+CIDYRQLNKV                          IDLRSGYYQLRVKDSD+LK                                    ++ SK EFWL+ VGFLG+IVS   IRVDP+KISAI+ WK  R+V+EVRSFLGLAGYY+ FVK FS+IAT + +LLQKDVKFEW+E CQ+SF++LK LLTEAPVLVQ E GKEFVVYSDAS+NGLGC LMQEGKV+ YA RQLK +EKNY THDLELAAIVFALKIW H+L+GE+C +F++HK LKYLMTQK+LNLRQRR LEL+KDYELVIDYH RK NVVA+ALS
Sbjct:  547 MAPTKLKELKAQLQELIDKGFARLSYSSWGAPVLFVKKKDGSIRLCIDYRQLNKVTVKNKYSLPRIDDLFDQWKGATVFSKIDLRSGYYQLRVKDSDVLKMTFQMRCGHYEFLVMPFGLTNAPVVFMNLMNHNQLYAKFSKSEFWLKEVGFLGYIVSRDRIRVDPSKISAIVYWKLPRSVTEVRSFLGLAGYYRHFVKGFSMIATLMMRLLQKDVKFEWTEKCQQSFEKLKALLTEAPVLVQLEPGKEFVVYSDASMNGLGCVLMQEGKVITYAYRQLKLYEKNYPTHDLELAAIVFALKIWRHHLYGERCQIFTNHKSLKYLMTQKELNLRQRRLLELIKDYELVIDYHARKTNVVADALS 908
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6URI9_9ROSI (DNA/RNA polymerases superfamily protein OS=Gossypium australe OX=47621 GN=EPI10_013590 PE=4 SV=1)

HSP 1 Score: 445.277 bits (1144), Expect = 1.504e-144
Identity = 231/341 (67.74%), Postives = 250/341 (73.31%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAIDLRSGYYQLRVKDSDILKTASRT--------------------------------------SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELK+QLQELTDRGFARPSFSP   PVL                          SGYYQLRV++SDILKTA RT                                      SKCEFWL  V FLGH+V AS IRVDP+K+SAILDWKP RN+SE+ SFLGLAGYY+RF+K F +IA P+TKLLQKDVKFEW E CQKSFD+LK LLTEAPVLVQPESGKEFV++SDASLNGLGC  MQEGKVVAYASRQLKPHE+NY THDLELAAIVFALKI  HYLF EKCH++SDHK LKYLMTQKDLNLRQRRWLELLKDYE VIDYH  KANVVA+ALS
Sbjct:  772 MAPTELKELKAQLQELTDRGFARPSFSPLGAPVL--------------------------SGYYQLRVRESDILKTAFRTRYGHYEFLVMPFGLTNAPAIFMDLMNRILRDKQLYAKFSKCEFWLNEVRFLGHVVLASGIRVDPSKVSAILDWKPPRNISEIHSFLGLAGYYRRFMKGFFMIAAPMTKLLQKDVKFEWLERCQKSFDQLKALLTEAPVLVQPESGKEFVIFSDASLNGLGCVFMQEGKVVAYASRQLKPHERNYPTHDLELAAIVFALKIRRHYLFSEKCHVYSDHKSLKYLMTQKDLNLRQRRWLELLKDYEFVIDYHPGKANVVADALS 1086
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6WR31_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_006382 PE=4 SV=1)

HSP 1 Score: 432.565 bits (1111), Expect = 1.390e-141
Identity = 233/337 (69.14%), Postives = 253/337 (75.07%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAI-------------------------DLRSGYYQLRVKDSDILKTA--SRTSKCEFWLRGVGFLGHIVSASEIRVD-------PTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAP ELKELKSQLQEL DRGFARPSFS W  PVLFVKKKDGTMR+CIDYRQLNKV I                         DLRS YYQLRVKDSDI K     R    EF +   G    + +A  I +D       P +   ++  K  +NV EVRSFLGLAGYY+RFVK FS IAT LT+LLQK+V+FEWS+ CQKSFD+LKTLLTE PVLVQP+SGKEFVVYSDASLNGLGC LM+EGKV+AYASRQLK  EKNY THDLELAAIVFALKIW HYLFGEKCH+FSDHK LKYLMTQ DLNLRQRRWLELLKDYELVIDYH  KANVVA+ALS
Sbjct:  247 MAPIELKELKSQLQELADRGFARPSFSSWGAPVLFVKKKDGTMRMCIDYRQLNKVTIKNKYSLPKIDDLFDQLKGATVFSKIDLRSRYYQLRVKDSDIPKITFRPRYRHYEFLVMPFG----LTNAPAIFIDMMNRIFRPYRDQFVV--KSPKNVFEVRSFLGLAGYYRRFVKGFSTIATLLTRLLQKEVRFEWSDKCQKSFDQLKTLLTEGPVLVQPKSGKEFVVYSDASLNGLGCVLMKEGKVIAYASRQLKSREKNYPTHDLELAAIVFALKIWRHYLFGEKCHVFSDHKSLKYLMTQIDLNLRQRRWLELLKDYELVIDYHPGKANVVADALS 577
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6VUV3_9ROSI (DNA/RNA polymerases superfamily protein OS=Gossypium australe OX=47621 GN=EPI10_023445 PE=4 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 3.431e-139
Identity = 227/372 (61.02%), Postives = 254/372 (68.28%), Query Frame = 0 
Query:    1 MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYRQLNKVAI-------------------------DLRSGYYQLRVKDSDILKTASRTSKCEF---------------------WLR-------GVGFLGHIV--------SASEIRVDPTKI--------SAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            MAPTELKELKSQLQELTDRGFARPSFSPW  PVLFVKKK GTMR+CI+YRQLNKV I                         D RS YYQLRVK+SD+ KT  RT    +                     W+        GV F+  I+         A  +R+    +        S IL+WKPLRNVSEVRSFLGL GYY+RF+K  S+IATPLTKLLQKDVKFEWSE CQ+          +APVLVQPESGKEF+VYSDASLNGLGC LMQEGKV+AY SRQLKPHEKNY T+DL+LAAIVFALKI  HYL GE CH+++DHK LKYLMTQK+LNLRQRRWLELL+DYELVIDYH  KANVVA+ALS
Sbjct:  118 MAPTELKELKSQLQELTDRGFARPSFSPWGAPVLFVKKKYGTMRMCINYRQLNKVTIKNKYPLPHIDDFFDQLKGATVFSKIDFRSSYYQLRVKESDVPKTTFRTRYGHYEFLFMPFGLTNAPAVFMDLMNWIFKPYLDRFGVVFIDGILIYSCDEMQHAEHLRIVLQILREKQLYAKSTILEWKPLRNVSEVRSFLGLVGYYRRFLKGSSMIATPLTKLLQKDVKFEWSEKCQQ----------KAPVLVQPESGKEFIVYSDASLNGLGCVLMQEGKVIAYVSRQLKPHEKNYPTYDLKLAAIVFALKISRHYLVGEICHVYTDHKSLKYLMTQKELNLRQRRWLELLEDYELVIDYHPGKANVVADALS 479
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.917e-44
Identity = 88/223 (39.46%), Postives = 133/223 (59.64%), Query Frame = 0 
Query:   82 KCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQ-KSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            KCEF  +   FLGHIV+   I+ +P K+ AI+ +       E+R+FLGL GYY++F+  ++ IA P+T  L+K  K +  ++   ++F++LK L+   P+L  P+  K+FV+ +DAS   LG  L Q G  +++ SR L  HE NY   + EL AIV+A K + HYL G +  + SDH+ L++L   K+   +  RW   L +Y+  IDY   K N VA+ALS
Sbjct:  399 KCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALS 621
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.510e-43
Identity = 90/223 (40.36%), Postives = 133/223 (59.64%), Query Frame = 0 
Query:   82 KCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSE-MCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            KCEF  +   FLGH+++   I+ +P KI AI  +       E+++FLGL GYY++F+  F+ IA P+TK L+K++K + +      +F +LK L++E P+L  P+  K+F + +DAS   LG  L Q+G  ++Y SR L  HE NY T + EL AIV+A K + HYL G    + SDH+ L +L   KD N +  RW   L +++  I Y   K N VA+ALS
Sbjct:  400 KCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALS 622
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.550e-39
Identity = 84/235 (35.74%), Postives = 136/235 (57.87%), Query Frame = 0 
Query:   82 KCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQ-----------KDVKFEWSEMCQKSFDRLKTLLTEAPVLVQ-PESGKEFVVYSDASLNGLGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEK-CHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            K  F+   V +LG IVS    + DP K+ AI ++     V +VRSFLGLA YY+ F+K F+ IA P+T +L+           K +  E++E  + +F RL+ +L    V+++ P+  K F + +DAS +G+G  L QEG+ +   SR LK  E+NY T++ EL AIV+AL    ++L+G +  ++F+DH+ L + +  ++ N + +RW   +  +   + Y   K N VA+ALS
Sbjct:  375 KTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALS 609
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.740e-33
Identity = 78/226 (34.51%), Postives = 120/226 (53.10%), Query Frame = 0 
Query:   82 KCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGK----VVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGEKCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            KC F++  V FLGH  +   I  D  K   I ++    +    R F+    YY+RF+K F+  +  +T+L +K+V FEW++ CQK+F  LK+ L    +L  P+  KEF + +DAS    G  L Q        VAYASR     E N  T + ELAAI +A+  +  Y++G+   + +DH+ L YL +  + + +  R    L++Y   ++Y   K N VA+ALS
Sbjct:  508 KCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALS 733
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.680e-33
Identity = 78/238 (32.77%), Postives = 130/238 (54.62%), Query Frame = 0 
Query:   82 KCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQ-----------KDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQE----GKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGE-KCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            K  F    V FLG+IV+A  I+ DP K+ AI +  P  +V E++ FLG+  YY++F++ ++ +A PLT L +             V     E   +SF+ LK++L  + +L  P   K F + +DAS   +G  L Q+     + +AY SR L   E+NY T + E+ AI+++L     YL+G     +++DH+ L + +  ++ N + +RW   +++Y   + Y   K+NVVA+ALS
Sbjct:  316 KSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALS 553
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.177e-28
Identity = 75/232 (32.33%), Postives = 118/232 (50.86%), Query Frame = 0 
Query:   81 SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGK-----VVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFG--EKCHMFSDHKILKYLMTQKD--LNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            +KCEF    V F+G+ +S          I  +L WK  +N  E+R FLG   Y ++F+   S +  PL  LL+KDV+++W+    ++ + +K  L   PVL   +  K+ ++ +DAS   +G  L Q+        V Y S ++   + NY   D E+ AI+ +LK W HYL    E   + +DH+ L   +T +    N R  RW   L+D+   I+Y    AN +A+ALS
Sbjct:  599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALS 830
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.177e-28
Identity = 75/232 (32.33%), Postives = 118/232 (50.86%), Query Frame = 0 
Query:   81 SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGK-----VVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFG--EKCHMFSDHKILKYLMTQKD--LNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            +KCEF    V F+G+ +S          I  +L WK  +N  E+R FLG   Y ++F+   S +  PL  LL+KDV+++W+    ++ + +K  L   PVL   +  K+ ++ +DAS   +G  L Q+        V Y S ++   + NY   D E+ AI+ +LK W HYL    E   + +DH+ L   +T +    N R  RW   L+D+   I+Y    AN +A+ALS
Sbjct:  599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALS 830
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.177e-28
Identity = 75/232 (32.33%), Postives = 118/232 (50.86%), Query Frame = 0 
Query:   81 SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGK-----VVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFG--EKCHMFSDHKILKYLMTQKD--LNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            +KCEF    V F+G+ +S          I  +L WK  +N  E+R FLG   Y ++F+   S +  PL  LL+KDV+++W+    ++ + +K  L   PVL   +  K+ ++ +DAS   +G  L Q+        V Y S ++   + NY   D E+ AI+ +LK W HYL    E   + +DH+ L   +T +    N R  RW   L+D+   I+Y    AN +A+ALS
Sbjct:  599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALS 830
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.177e-28
Identity = 75/232 (32.33%), Postives = 118/232 (50.86%), Query Frame = 0 
Query:   81 SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGK-----VVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFG--EKCHMFSDHKILKYLMTQKD--LNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            +KCEF    V F+G+ +S          I  +L WK  +N  E+R FLG   Y ++F+   S +  PL  LL+KDV+++W+    ++ + +K  L   PVL   +  K+ ++ +DAS   +G  L Q+        V Y S ++   + NY   D E+ AI+ +LK W HYL    E   + +DH+ L   +T +    N R  RW   L+D+   I+Y    AN +A+ALS
Sbjct:  599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALS 830
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.188e-28
Identity = 75/232 (32.33%), Postives = 118/232 (50.86%), Query Frame = 0 
Query:   81 SKCEFWLRGVGFLGHIVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQEGK-----VVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFG--EKCHMFSDHKILKYLMTQKD--LNLRQRRWLELLKDYELVIDYHLRKANVVAEALS 303
            +KCEF    V F+G+ +S          I  +L WK  +N  E+R FLG   Y ++F+   S +  PL  LL+KDV+++W+    ++ + +K  L   PVL   +  K+ ++ +DAS   +G  L Q+        V Y S ++   + NY   D E+ AI+ +LK W HYL    E   + +DH+ L   +T +    N R  RW   L+D+   I+Y    AN +A+ALS
Sbjct:  599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALS 830
[Close]
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. Araport11
Match: gnl|BL_ORD_ID|48309 (ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235916-236392 FORWARD LENGTH=158 | 201606)

HSP 1 Score: 94.3597 bits (233), Expect = 2.448e-23
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 0 
Query:   82 KCEFWLRGVGFLGH--IVSASEIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTKLLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNGLGCFLMQE 208
            KC F    + +LGH  I+S   +  DP K+ A++ W   +N +E+R FLGL GYY+RFVK +  I  PLT+LL+K+   +W+EM   +F  LK  +T  PVL  P+    FV  +        CF+ +E
Sbjct:   22 KCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV--TRVGKWNWSCFITRE 147
The following BLAST results are available for this feature:
BLAST of genemark-At_01-g-70.52-mRNA-1 vs. NCBI nr
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gb|KAA3487887.1|1.450e-17375.00reverse transcriptase [Gossypium australe][more]
gb|KAG8485863.1|1.307e-16371.23hypothetical protein CXB51_019210 [Gossypium anoma... [more]
gb|KAG8498362.1|1.665e-16369.61hypothetical protein CXB51_006995 [Gossypium anoma... [more]
gb|KAG8502587.1|2.399e-16279.53hypothetical protein CXB51_000034 [Gossypium anoma... [more]
gb|KAG8502445.1|3.445e-16168.02hypothetical protein CXB51_000382 [Gossypium anoma... [more]
gb|KAA3456998.1|3.540e-15768.72DNA/RNA polymerases superfamily protein [Gossypium... [more]
gb|KAA3469597.1|5.714e-15675.25Retrotransposable element Tf2 [Gossypium australe][more]
gb|KAG8496934.1|1.285e-15470.03hypothetical protein CXB51_008104 [Gossypium anoma... [more]
gb|KAG8490951.1|2.375e-15473.73hypothetical protein CXB51_014087 [Gossypium anoma... [more]
gb|KAA3470642.1|3.710e-15462.37DNA/RNA polymerases superfamily protein [Gossypium... [more]
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5B6X4R5_9ROSI6.977e-17475.00Reverse transcriptase OS=Gossypium australe OX=476... [more]
A0A5B6UIF8_9ROSI1.703e-15768.72Reverse transcriptase OS=Gossypium australe OX=476... [more]
A0A5B6VKP0_9ROSI2.749e-15675.25Retrotransposable element Tf2 OS=Gossypium austral... [more]
A0A5B6VNB3_9ROSI1.785e-15462.37Reverse transcriptase OS=Gossypium australe OX=476... [more]
A0A5B6X052_9ROSI2.171e-15471.56DNA/RNA polymerases superfamily protein OS=Gossypi... [more]
A0A5B6VX34_9ROSI1.925e-15064.95Reverse transcriptase OS=Gossypium australe OX=476... [more]
A0A5B6U6B7_9ROSI1.572e-14763.81DNA/RNA polymerases superfamily protein OS=Gossypi... [more]
A0A5B6URI9_9ROSI1.504e-14467.74DNA/RNA polymerases superfamily protein OS=Gossypi... [more]
A0A5B6WR31_9ROSI1.390e-14169.14Reverse transcriptase OS=Gossypium australe OX=476... [more]
A0A5B6VUV3_9ROSI3.431e-13961.02DNA/RNA polymerases superfamily protein OS=Gossypi... [more]
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. ExPASy Swiss-Prot
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
POL2_DROME8.917e-4439.46Retrovirus-related Pol polyprotein from transposon... [more]
POL3_DROME1.510e-4340.36Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME4.550e-3935.74Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME1.740e-3334.51Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME2.680e-3332.77Retrovirus-related Pol polyprotein from transposon... [more]
TF29_SCHPO1.177e-2832.33Transposon Tf2-9 polyprotein OS=Schizosaccharomyce... [more]
TF24_SCHPO1.177e-2832.33Transposon Tf2-4 polyprotein OS=Schizosaccharomyce... [more]
TF22_SCHPO1.177e-2832.33Transposon Tf2-2 polyprotein OS=Schizosaccharomyce... [more]
TF21_SCHPO1.177e-2832.33Transposon Tf2-1 polyprotein OS=Schizosaccharomyce... [more]
TF26_SCHPO1.188e-2832.33Transposon Tf2-6 polyprotein OS=Schizosaccharomyce... [more]
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BLAST of genemark-At_01-g-70.52-mRNA-1 vs. Araport11
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
gnl|BL_ORD_ID|483092.448e-2338.76ATMG00860.1 | DNA/RNA polymerases superfamily prot... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-70.52-mRNA-1; organism=Gossypium hirsutum; type=mRNA; length=912bp
ATGGCTCCGACCGAATTAAAGGAATTGAAATCTCAGTTGCAAGAATTGAC
CGATCGAGGATTTGCTAGACCGAGTTTTTCACCATGGTGTGATCCTGTTC
TGTTTGTGAAAAAGAAAGATGGCACAATGAGAATTTGTATTGATTACCGT
CAACTTAATAAAGTGGCTATAGATCTGAGATCGGGTTACTATCAGTTGCG
GGTAAAGGACTCTGATATTTTGAAAACTGCTTCTAGAACGAGTAAATGTG
AATTCTGGTTGCGAGGTGTTGGCTTTCTGGGCCATATTGTATCAGCCTCC
GAAATCCGAGTTGATCCGACCAAAATTTCAGCTATTTTGGATTGGAAACC
TCTTAGGAATGTTTCTGAAGTCCGTAGTTTTTTGGGCCTTGCTGGTTACT
ACAAACGATTTGTAAAATATTTCTCTGTGATAGCAACTCCATTGACAAAG
TTGCTTCAAAAAGATGTAAAATTTGAATGGTCTGAAATGTGTCAGAAAAG
TTTTGATCGGTTAAAAACTCTGTTAACTGAAGCTCCCGTACTTGTGCAAC
CTGAATCAGGTAAAGAATTCGTTGTTTATAGTGATGCTTCGTTGAACGGA
CTCGGTTGTTTTTTAATGCAAGAAGGAAAAGTTGTTGCTTATGCTTCGAG
ACAATTAAAGCCACATGAGAAGAACTATCTGACACACGACCTTGAGTTAG
CTGCCATTGTGTTTGCTTTGAAGATCTGGCATCACTATCTATTTGGTGAG
AAATGTCACATGTTTTCTGATCATAAAATTCTAAAGTACTTAATGACGCA
AAAAGACTTGAATCTGCGACAGAGAAGATGGTTAGAACTGTTAAAAGATT
ATGAACTTGTGATTGATTATCATCTGAGAAAAGCAAATGTTGTTGCTGAG
GCTTTGAGTTGA
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protein sequence of genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1

>genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1; organism=Gossypium hirsutum; type=polypeptide; length=303bp
MAPTELKELKSQLQELTDRGFARPSFSPWCDPVLFVKKKDGTMRICIDYR
QLNKVAIDLRSGYYQLRVKDSDILKTASRTSKCEFWLRGVGFLGHIVSAS
EIRVDPTKISAILDWKPLRNVSEVRSFLGLAGYYKRFVKYFSVIATPLTK
LLQKDVKFEWSEMCQKSFDRLKTLLTEAPVLVQPESGKEFVVYSDASLNG
LGCFLMQEGKVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWHHYLFGE
KCHMFSDHKILKYLMTQKDLNLRQRRWLELLKDYELVIDYHLRKANVVAE
ALS
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mRNA from alignment at At01:70166656..70170936+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-70.52-mRNA-1; organism=Gossypium hirsutum; type=mRNA; length=4281bp; location=Sequence derived from: At01:70166656..70170936+ (Gossypium hirsutum
ATGGCTCCGACCGAATTAAAGGAATTGAAATCTCAGTTGCAAGAATTGAC
CGATCGAGGATTTGCTAGACCGAGTTTTTCACCATGGTGTGATCCTGTTC
TGTTTGTGAAAAAGAAAGATGGCACAATGAGAATTTGTATTGATTACCGT
CAACTTAATAAAGTGGCTGTATAGAAAAAATACCCTCTGCCTAGAATTGA
TGGCTTATTTGATCAGTTGAAATGTGCTACTGTGTTTTCTAAGATAGATC
TGAGATCGGGTTACTATCAGTTGCGGGTAAAGGACTCTGATATTTTGAAA
ACTGCTTCTAGAACGAGGTACGGGCGTTATGAATTTTTAGTTATGCCTTT
TGGTTTAACGAATGCACCTGTTGTATTTATGGATTTAATGATGTAACTCC
CCTTACCCGTATCCAAGGCTGGAGCAGAGTACAACGCATTACCAGACTTA
ACAATACACATAGACGAAAATCGGGCCATAAAATTTCATTTAATTCAAAA
CTTTTCGAACACATGCATAACAAACAAAGCTAACTATATCATCACATCAA
AACATAGGACATGGCACGATTAATTAAACTTATAAACCATAATGGATAAG
GACCACATCTCATGATTTTATACGATAACTCAATGCAGACTGATACGTAT
GGTCAAAATCATAATAAAAATACATATCACAAACCAACTTCCTATACATG
CCACTCACTTGATATTTCTAATATTTGAATTAATTTTCCCAAAAATGATA
GTTTGATAGTGTGATTTTGCCTACGACGATCTCCAACCCCGAGCCGACCT
GCCAATACTAAAGAAATGGAGAGGATGGGTAAGCTTTACGCTTAGTAAGT
TCATATGAAAATAATAAGCAATTACTACCATGCTTTTCAAGATAAAACAC
TATAATTGTACAATTACACATATTCAGGACAGGCTGTTTTCTGGAGTCCC
AGTGTTAAAAAAATCATATCTCAACTCGAAATCCAATTTCGTAAAATTTC
CATGAAACTAAACTCATATGTCTACTTACTAATTTTTTTCTAGAATTTTT
GGTCGGGCCATTTAGTACAGTTTATTAGTTAAAGCCTCCCCTGTTTCAGG
GTATGACTACTCTGACCCCTGTGCACTACGAACCGAATTTCTCCCTGTAC
AGAATTCCAACAACCATGCCATTTGTTTCCACTAAAATTAGATTAAATAA
GGAATCCATGCATGTAAGGTATGACTCTCAAAATTTTTTTTACAATTTAT
GGTGAATTTCTAAAGTCAGAACAGGGGATCTCGAATTCATTCAGACCCTA
TTTCACAAGAATTCAAATATCATACAATATAGAATTCTTTTGCTTCCCCT
ATTTCTTTCATGTGAAAATAGACTCATTAAGCTTTATTTTCATATATCAT
TTGCATTTTTAATGAACTTCCACAATTTTTAGTGAATTTTCAAAGTCATG
CAACTGCTGCTGTCCAACACTGTTTTACCACTAAAATTCATTCTTACATA
ATTCCACTTAATCCATTTTGTCTTATCGAAATTCACCCAATTATCGAGCA
CATTGCTCATAATTTTTCATAAACATATACCTACACTTATTCATCATATA
ATTATGTTCAATTGTATTTTTACTTAATCGATTTTCCCATTGAATTCTTC
GGAATAATAATTGATACTCAATTGCCTGCACATATTTTCACACTTGTAGC
CAAAGCTATCTGGTACGCATAGTAGCCTACACATAGTACTACACATGCGA
CTAATTATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACGCCTGCA
CTTAGTACTACATGCCTGCACTTAGTACTACACACGTGACCAATTATCCG
GTACACGTAGTAGCTTGCACTTAGTACTACACACGTGATCACAGTTTTCG
GGTACGCATTGTAGCATGCACTTAGTACTACACATGCGACCTCACAATAG
ATCATTCTTATCATTTTTATTCCGAAGGTTCAATCGGGAAATTCCTCACT
TTTCAACATTTTACTAAATTGTCCGTAATCAATTTAAATTCATAATTTAC
ATCAAGTAACCATTTGATAGGCAGCCACATTTCATATGATATCAAAATAT
AATAACATAAAAAGAATCGATAGATTATTTATGTACGAATTTACTCGAAG
TGTCGATCTCACTATCCATAGTACCAATTGTCCATTCATAGTATAATAAG
ACACAACTCAAATATCAAATCAGCTTTTAAGAATTTACATAACTTATATC
ACATATTTCATATATCACTTGTCATGTATCTTCATTTTCTTGCATTTCAT
GTAACATTCTTTCATGTCATATTTCCACAACATAAACACCATTCCATCAA
CTTTTCCAATATATTAAATCATAAAATATATGCAATAATAGTAAGAAATA
AAATTCAAACATAACATTGCATTATTATTATCATACGAACTTACCTCGAT
CCAGAAACAGCAATTTACCATTTTAGTCCATAACCTTGTATTTTCCCGAT
TTAAGCCCGAATATCGATTTCCTTCATCTATAATATCACATTTATCCTAA
TAATTAGTTACACTATTCATACGGGTCCAAAAATCATAATTTTAAAAATT
TTCATTTTGACCCCTAAACTTTTGCATATTTTCACTTTTTCCCCAAGGTT
TCGAAATTAAACTTCATCCTATTTTCTTATGTTTTATGACCTGCTAATCA
TTTTTCCCTTCTATGGCAACATCAAATTCTCACTCTAACATGTATTTATG
ACTATTAGGTATTTTTACCGATTAAGCCCTTTTGCACGTTTTCACTTAAA
ACCAAGTAGCACAAGTTGTCTAACATAATTTAAAACCTCATATTCTATCA
TAAAACACCAAAATACACAAATTTCACCTATGGGTATTTTTCCAAATATG
AACCCTAGGTTGAATTATTGCTAACATAAGCTAAATCAAGTTACCGGGAC
TCCAAAAATGTACAAATCATTAAAAACGAGGCTAGAACGGACTTACAATC
GAGCTTGGAAGCTTGGAAACCCAATCCATGGAGTCTCCCTTGGTATACAT
GTCCATGGTGAAGAAGATGAGCAAAATTGGCTTTTAATTTTGTATTTTAA
TTCATTTTACCCATAAATGACCAAAATGCCCTTACTACTAAACTTTCCAA
AAATTCTATTCATGTCCAATATTTGTCCATAAACTTTGAAATTGGTAAAA
TTTATATTTAAGACCTCATAATTAATATTTCAAAGCAATTTCATACTAGA
AACTTCTAGAATGCAAGTTTTGCAACTTATTCAATTTAGTCCCTAACTTC
AAATTAAGCACTTTATGCATAGGATTTCTTCACGAAATTTTCACACAATC
ATGCAATCATATCATAGACCTCAAAATAATCATAAAATAATTATTTCTAT
CTCAGATTTGTGGTCACAAAACCACTATTCTGATTAGGCCCTAATTCGGG
ATATTACAAATGAATAGAATTTTAAGACCGTATTTAGATTAATTTGTTGT
AGTATTCATTAATGACATATTGATTTATTCACGTGATGAATCTGAACATG
CCAAGCATTTGAGAATAGTGCTACAAACTCTGCGAGATAAATAGTTGTAT
GCGAAATTCAGTAAATGTGAATTCTGGTTGCGAGGTGTTGGCTTTCTGGG
CCATATTGTATCAGCCTCCGAAATCCGAGTTGATCCGACCAAAATTTCAG
CTATTTTGGATTGGAAACCTCTTAGGAATGTTTCTGAAGTCCGTAGTTTT
TTGGGCCTTGCTGGTTACTACAAACGATTTGTAAAATATTTCTCTGTGAT
AGCAACTCCATTGACAAAGTTGCTTCAAAAAGATGTAAAATTTGAATGGT
CTGAAATGTGTCAGAAAAGTTTTGATCGGTTAAAAACTCTGTTAACTGAA
GCTCCCGTACTTGTGCAACCTGAATCAGGTAAAGAATTCGTTGTTTATAG
TGATGCTTCGTTGAACGGACTCGGTTGTTTTTTAATGCAAGAAGGAAAAG
TTGTTGCTTATGCTTCGAGACAATTAAAGCCACATGAGAAGAACTATCTG
ACACACGACCTTGAGTTAGCTGCCATTGTGTTTGCTTTGAAGATCTGGCA
TCACTATCTATTTGGTGAGAAATGTCACATGTTTTCTGATCATAAAATTC
TAAAGTACTTAATGACGCAAAAAGACTTGAATCTGCGACAGAGAAGATGG
TTAGAACTGTTAAAAGATTATGAACTTGTGATTGATTATCATCTGAGAAA
AGCAAATGTTGTTGCTGAGGCTTTGAGTTGA
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Coding sequence (CDS) from alignment at At01:70166656..70170936+

>genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-70.52-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-70.52-mRNA-1; organism=Gossypium hirsutum; type=CDS; length=912bp; location=Sequence derived from: At01:70166656..70170936+ (Gossypium hirsutum
ATGGCTCCGACCGAATTAAAGGAATTGAAATCTCAGTTGCAAGAATTGAC
CGATCGAGGATTTGCTAGACCGAGTTTTTCACCATGGTGTGATCCTGTTC
TGTTTGTGAAAAAGAAAGATGGCACAATGAGAATTTGTATTGATTACCGT
CAACTTAATAAAGTGGCTATAGATCTGAGATCGGGTTACTATCAGTTGCG
GGTAAAGGACTCTGATATTTTGAAAACTGCTTCTAGAACGAGTAAATGTG
AATTCTGGTTGCGAGGTGTTGGCTTTCTGGGCCATATTGTATCAGCCTCC
GAAATCCGAGTTGATCCGACCAAAATTTCAGCTATTTTGGATTGGAAACC
TCTTAGGAATGTTTCTGAAGTCCGTAGTTTTTTGGGCCTTGCTGGTTACT
ACAAACGATTTGTAAAATATTTCTCTGTGATAGCAACTCCATTGACAAAG
TTGCTTCAAAAAGATGTAAAATTTGAATGGTCTGAAATGTGTCAGAAAAG
TTTTGATCGGTTAAAAACTCTGTTAACTGAAGCTCCCGTACTTGTGCAAC
CTGAATCAGGTAAAGAATTCGTTGTTTATAGTGATGCTTCGTTGAACGGA
CTCGGTTGTTTTTTAATGCAAGAAGGAAAAGTTGTTGCTTATGCTTCGAG
ACAATTAAAGCCACATGAGAAGAACTATCTGACACACGACCTTGAGTTAG
CTGCCATTGTGTTTGCTTTGAAGATCTGGCATCACTATCTATTTGGTGAG
AAATGTCACATGTTTTCTGATCATAAAATTCTAAAGTACTTAATGACGCA
AAAAGACTTGAATCTGCGACAGAGAAGATGGTTAGAACTGTTAAAAGATT
ATGAACTTGTGATTGATTATCATCTGAGAAAAGCAAATGTTGTTGCTGAG
GCTTTGAGTTGA
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