genemark-At_01-g-46.90-mRNA-1

Transcript Overview
Namegenemark-At_01-g-46.90-mRNA-1
Unique Namegenemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length750
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At01chromosomeAt01:46537967..46538928 +Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
barbarR0024Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bard3dR0029Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
bargauR0009Gossypium australe (G2) genome CRI_v1.1Gossypium australe
barganR0002Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
barghR0000Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
barghR0014Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
barghtR0000Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
barghtR0017Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
barghzR0000Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
bargrbR0003Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
bargroR0003Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
barghzR0017Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
bargroR0018Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
bargrhR0002Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
bargtiR0032Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
barhwR0008Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
barhnR0000Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
barhnR0028Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
bartoR0000Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
barhzR0000Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bartoR0002Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
barhzR0016Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bartoR0015Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
barndmR0000Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
barndmR0016Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
barjmbR0000Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
barjmbR0019Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
barpscR0002Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
barpscR0018Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GH_A01G1330Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
genemark-At_01-proG-46.90-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
genemark-At_01-g-46.90genemark-At_01-g-46.90_NSF-Bar32_v1Gossypium hirsutumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
genemark-At_01-g-46.90-mRNA-1:exon:1159_NSF-Bar32_v1genemark-At_01-g-46.90-mRNA-1:exon:1159_NSF-Bar32_v1Gossypium hirsutumexon
genemark-At_01-g-46.90-mRNA-1:exon:1160_NSF-Bar32_v1genemark-At_01-g-46.90-mRNA-1:exon:1160_NSF-Bar32_v1Gossypium hirsutumexon
genemark-At_01-g-46.90-mRNA-1:exon:1161_NSF-Bar32_v1genemark-At_01-g-46.90-mRNA-1:exon:1161_NSF-Bar32_v1Gossypium hirsutumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
genemark-At_01-g-46.90-mRNA-1:cds_NSF-Bar32_v1genemark-At_01-g-46.90-mRNA-1:cds_NSF-Bar32_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
genemark-At_01-g-46.90-mRNA-1genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1-proteinGossypium hirsutumpolypeptide
genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8503209.1| (hypothetical protein CXB51_001194 [Gossypium anomalum])

HSP 1 Score: 397.512 bits (1020), Expect = 1.370e-131
Identity = 197/255 (77.25%), Postives = 215/255 (84.31%), Query Frame = 0 
Query:   13 AKFQPYLTRSLREILLRFGAFWDL------------SVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRK------SLFALRAMNKVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            +K QPYLT SLREILL+FGAFWDL            +  T+APVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHV+S++KSLKYLMTQR+LNLRQ R LELLKDYELVIDYHPGKANV+ADALS +       ++ +R   KVDD+LVAKR EC     SEFQIDDD+CLRF+S LC+PRNSELIS+ILNEAH SRMSIHPGSTKMYNDL R
Sbjct:  188 SKLQPYLTGSLREILLKFGAFWDLPKNVREVFDQLKTYLTEAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVYSDNKSLKYLMTQRELNLRQRRWLELLKDYELVIDYHPGKANVIADALSPELKAKPLLIYQIREAQKVDDELVAKRAECYFEHGSEFQIDDDDCLRFKSRLCIPRNSELISIILNEAHSSRMSIHPGSTKMYNDLRR 442
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8490788.1| (hypothetical protein CXB51_014002 [Gossypium anomalum])

HSP 1 Score: 380.178 bits (975), Expect = 1.289e-125
Identity = 189/237 (79.75%), Postives = 198/237 (83.54%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDL 247
            T+APVLVQPESGKEFVI+SDASLLGLGCVLMQEGRVVAY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHV+S+HKSLKYLMTQR+LNLRQ R LELLKDYELVIDYHPGKANVVADALSRKSLF LRAMN                             KVD +LVAKR EC + MESEFQIDDD+CLRFR+ LCVPRNSELISMILNEAH SRMSIHPGSTKMYNDL
Sbjct:   29 TEAPVLVQPESGKEFVIFSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVYSDHKSLKYLMTQRELNLRQRRWLELLKDYELVIDYHPGKANVVADALSRKSLFTLRAMNVHLFALSDSALVAELKARPLWIQQICEAQKVDGELVAKRAECATGMESEFQIDDDDCLRFRNRLCVPRNSELISMILNEAHNSRMSIHPGSTKMYNDL 265
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8490817.1| (hypothetical protein CXB51_013992 [Gossypium anomalum])

HSP 1 Score: 383.259 bits (983), Expect = 8.948e-125
Identity = 190/239 (79.50%), Postives = 201/239 (84.10%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            T+AP+LVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAY SRQLKPHEKNY THDLELAAIVFALKIWRHYLFGE+CHVFS+HKSLKYLMTQRDLNLRQ R LELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN                             K+D++LVAKR ECVS+MESEFQ+DDD+CLRFRS LCVPRNS+LIS ILNEAHCSRMSIH GSTKMYNDL R
Sbjct:  149 TEAPILVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYLTHDLELAAIVFALKIWRHYLFGEKCHVFSDHKSLKYLMTQRDLNLRQRRWLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNVHLSILSDNVLVVELKAKPLLIHQIREAQKIDEELVAKRAECVSSMESEFQVDDDDCLRFRSRLCVPRNSKLISTILNEAHCSRMSIHSGSTKMYNDLRR 387
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8485714.1| (hypothetical protein CXB51_019031 [Gossypium anomalum])

HSP 1 Score: 370.163 bits (949), Expect = 1.751e-124
Identity = 186/237 (78.48%), Postives = 195/237 (82.28%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDL 247
            T+A VLVQPESGKEFVIYSDASL+GLGCVLMQEGRVVAY  RQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHV+S+HKSLKYLMTQR+LNLRQ   LELLKDYELVIDYHPGKANVVADALSRKSLFALR MN                             KVDD+LVAKR ECVSNM+SEFQIDD++CLRFRS LCVPRNSELI MILNEA  SRMSIHPGS KMYNDL
Sbjct:   29 TEALVLVQPESGKEFVIYSDASLIGLGCVLMQEGRVVAYAPRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVYSDHKSLKYLMTQRELNLRQRHWLELLKDYELVIDYHPGKANVVADALSRKSLFALRVMNVYLSVLSDAVLVAELKAKPSLIHQIREAQKVDDELVAKRAECVSNMDSEFQIDDNDCLRFRSRLCVPRNSELIMMILNEARNSRMSIHPGSMKMYNDL 265
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: ref|WP_180271009.1| (hypothetical protein, partial [Bacillus thuringiensis])

HSP 1 Score: 362.844 bits (930), Expect = 2.392e-124
Identity = 183/227 (80.62%), Postives = 190/227 (83.70%), Query Frame = 0 
Query:   50 SGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDL 247
            SGKEFVIYSDASLLGLGCVLMQEGRVVAY SRQLKPHEKNYPTHDLELAAI+FALKIWRHYLFGE+CHV+S+HKSLKYLMTQRDLNLRQ R LELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN                             KVDD+LVAKR E V N+ESEFQIDDD+CLRFRS LCVPRN ELISMILNEAHCSRMSIHPGSTKMYNDL
Sbjct:    1 SGKEFVIYSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIIFALKIWRHYLFGEKCHVYSDHKSLKYLMTQRDLNLRQRRWLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNVHLSILPDNVLVAELKAKPLLTHQIREAQKVDDELVAKRAEWVPNVESEFQIDDDDCLRFRSRLCVPRNLELISMILNEAHCSRMSIHPGSTKMYNDL 227
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8480932.1| (hypothetical protein CXB51_025599 [Gossypium anomalum])

HSP 1 Score: 385.185 bits (988), Expect = 9.243e-124
Identity = 194/239 (81.17%), Postives = 199/239 (83.26%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            T+APVLVQPESGKEFVIYSDASLLGLGCVLMQEGRV+AY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFS+HKSLKYLMTQRDLNLRQ R LELLKDYELVIDYHPGKANVVAD LS KSLFALR MN                             KVDD+LVAKR ECVSNMESEFQIDDD+CLRFRS L VPRNSELISMILNEAH SRMSIHPGSTKMYNDL R
Sbjct:  568 TEAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVIAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSDHKSLKYLMTQRDLNLRQRRWLELLKDYELVIDYHPGKANVVADVLSLKSLFALRGMNVHLSFLSDNVLVAELKAKPLLIHQIREAQKVDDELVAKRAECVSNMESEFQIDDDDCLRFRSRLYVPRNSELISMILNEAHYSRMSIHPGSTKMYNDLRR 806
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8490789.1| (hypothetical protein CXB51_014001 [Gossypium anomalum])

HSP 1 Score: 379.793 bits (974), Expect = 1.179e-123
Identity = 189/237 (79.75%), Postives = 198/237 (83.54%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDL 247
            T+APVLVQPESGKEFVI+SDASLLGLGCVLMQEGRVVAY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHV+S+HKSLKYLMTQR+LNLRQ R LELLKDYELVIDYHPGKANVVADALSRKSLF LRAMN                             KVD +LVAKR EC + MESEFQIDDD+CLRFR+ LCVPRNSELISMILNEAH SRMSIHPGSTKMYNDL
Sbjct:  242 TEAPVLVQPESGKEFVIFSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVYSDHKSLKYLMTQRELNLRQRRWLELLKDYELVIDYHPGKANVVADALSRKSLFTLRAMNVHLFALSDSALVAELKARPLWIQQICEAQKVDGELVAKRAECATGMESEFQIDDDDCLRFRNRLCVPRNSELISMILNEAHNSRMSIHPGSTKMYNDL 478
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8491584.1| (hypothetical protein CXB51_014656 [Gossypium anomalum])

HSP 1 Score: 381.333 bits (978), Expect = 5.212e-120
Identity = 187/239 (78.24%), Postives = 199/239 (83.26%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            T+AP+LVQPES KEFVIYSDASLLGLGCVLMQEGRVVAY SRQLKPHEKNYPTHDLELAAIVF LKIWRHYLFGE+CHVFS+HKSLKYLMTQRDLNLRQ   LELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN                             K+D++LVAKR ECV NMESEFQ+D+D+CLRFRS LCVPRN+ELISMILNEAHC RMS+HPGSTKMYNDL R
Sbjct:  882 TEAPILVQPESDKEFVIYSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIVFTLKIWRHYLFGEKCHVFSDHKSLKYLMTQRDLNLRQRHWLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNVHLSILSDNVLVVELKAKPLLIHQIREAQKIDEELVAKRAECVPNMESEFQLDEDDCLRFRSQLCVPRNAELISMILNEAHCGRMSLHPGSTKMYNDLRR 1120
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8500640.1| (hypothetical protein CXB51_002642 [Gossypium anomalum])

HSP 1 Score: 371.703 bits (953), Expect = 1.493e-119
Identity = 177/198 (89.39%), Postives = 187/198 (94.44%), Query Frame = 0 
Query:   52 KEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNKVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            KEFVIY+DA LLGLGCVLMQEGRVVAY SR+LKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHV+S+HKS KYLMTQRDLNLRQ R LELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNKVDD+L+AKR EC SN+ESEFQIDD++CLRFRS LCVPRNSELI MIL+EAH SRMSIHPGSTKMYNDL R
Sbjct:  333 KEFVIYNDAFLLGLGCVLMQEGRVVAYASRELKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVYSDHKSFKYLMTQRDLNLRQRRWLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNKVDDELIAKRAECASNVESEFQIDDNDCLRFRSRLCVPRNSELILMILSEAHSSRMSIHPGSTKMYNDLKR 530
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Match: gb|KAG8474462.1| (hypothetical protein CXB51_031417 [Gossypium anomalum])

HSP 1 Score: 368.237 bits (944), Expect = 2.214e-119
Identity = 180/208 (86.54%), Postives = 190/208 (91.35%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNKVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDL 247
            T+APVLVQPE GKEFVIYSDASLLGLGCVLMQEGRVVAY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHV+S+HKSLKYLMTQR+LNLRQ R LELLKDYELVIDYHPGKANVVADALSRKSL       KVD +LVAKR EC   MESEFQID+D+CLRFR+ LCVPRNSELIS+ILNEAH SRMSIHPGSTKMYN+L
Sbjct:  149 TEAPVLVQPEFGKEFVIYSDASLLGLGCVLMQEGRVVAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVYSDHKSLKYLMTQRELNLRQRRWLELLKDYELVIDYHPGKANVVADALSRKSL----EPQKVDGELVAKRAECAMGMESEFQIDNDDCLRFRNRLCVPRNSELISVILNEAHNSRMSIHPGSTKMYNNL 352
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6WYN1_9ROSI (Integrase OS=Gossypium australe OX=47621 GN=EPI10_029975 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.084e-108
Identity = 159/242 (65.70%), Postives = 188/242 (77.69%), Query Frame = 0 
Query:   37 SVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAM-----------------------------NKVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            ++ T+APVLVQPESGKEFV++SDASL GLGCVLMQEG+VVAY SRQLKPH++NYPTHDLELAAIVFALKIWRHYLF E+CHV+S+HKSLKYLMTQ+DLNLRQ R LELLKDYEL IDYH GKANVVADALSRKSLF+LR M                              ++DD+L AKR  C  +++ +FQID + CLRF+  +CVP+N EL+ MI +EAH S++SIHPGSTKMYNDL +
Sbjct:   31 TLLTEAPVLVQPESGKEFVVFSDASLNGLGCVLMQEGKVVAYASRQLKPHKRNYPTHDLELAAIVFALKIWRHYLFSEKCHVYSDHKSLKYLMTQKDLNLRQRRWLELLKDYELAIDYHLGKANVVADALSRKSLFSLRTMYVDLAITDDGVIIAELNARSLFVQQIREAQEIDDELKAKRSLCGLDVDLDFQIDTEGCLRFKGRICVPKNPELVRMICDEAHSSKLSIHPGSTKMYNDLKQ 272
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6UZQ3_9ROSI (Integrase OS=Gossypium australe OX=47621 GN=EPI10_027803 PE=4 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 4.063e-107
Identity = 158/242 (65.29%), Postives = 186/242 (76.86%), Query Frame = 0 
Query:   37 SVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            ++ T APVLVQPE GK+FVIYSDASL GLGCVLMQEG+V+AY SRQLKPHE NY  HDLELA IVF LKIWRHYLFGE+CHVFS+HKSLK LMTQ+DLNLRQ R LELLKDYELVIDY PGKAN+VADALSRKSLFAL A+N                             KVDD+++AKR +C SN +SEF++D+D+CLRF+  +C+ R  ELI +ILNEA+ S +S+HPGSTKMY+DL +
Sbjct:   31 TLLTKAPVLVQPELGKKFVIYSDASLNGLGCVLMQEGKVIAYASRQLKPHEMNYLAHDLELAVIVFVLKIWRHYLFGEKCHVFSDHKSLKSLMTQKDLNLRQRRWLELLKDYELVIDYRPGKANIVADALSRKSLFALHALNAQLDLSDDSLVIAELKAKPLFLQQICDAQKVDDEIIAKRAQCDSNSDSEFRVDNDDCLRFQDRICISRIPELIQLILNEAYNSHLSVHPGSTKMYHDLKQ 272
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6V984_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_000751 PE=4 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 9.656e-107
Identity = 170/239 (71.13%), Postives = 193/239 (80.75%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            T+APVL QPESGKEF I+SDASL GLGCVLMQEG+V+AY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGE+CHV+S+HKSLKYLMTQ+DLNLRQ R LELLKDYELVIDYHPGKANVVADALSRKSLFALR +N                             KVD+KLVA RV+C ++ ES+FQID ++CL++++ LCVP NS+LI MIL+EAH  RMSIHPGSTKMYNDL +
Sbjct:  908 TEAPVLTQPESGKEFTIFSDASLSGLGCVLMQEGKVIAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGEKCHVYSDHKSLKYLMTQKDLNLRQRRWLELLKDYELVIDYHPGKANVVADALSRKSLFALRTLNTRMTMSEDGSIIAELQTRPMFIQQICEAQKVDEKLVAIRVQCENDTESDFQIDANDCLKYKNRLCVPMNSDLIQMILSEAHNGRMSIHPGSTKMYNDLKQ 1146
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: Q7XYU5_GOSHE (Integrase (Fragment) OS=Gossypium herbaceum OX=34274 PE=4 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 9.940e-107
Identity = 160/209 (76.56%), Postives = 171/209 (81.82%), Query Frame = 0 
Query:   70 MQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            MQEGRVVAY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGE+CHV+S+HKSLKYLMTQRDLNLRQ R LELLKDYELVIDYHPGKAN+VADALSRKSLFALRAMN                             KVD++L+AKR ECV N ESEFQIDDD+CLRFRS LCVP+NSELI +ILNEAHCSRM+IHPGSTKMYNDL R
Sbjct:    1 MQEGRVVAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGEKCHVYSDHKSLKYLMTQRDLNLRQRRWLELLKDYELVIDYHPGKANMVADALSRKSLFALRAMNVYLSILPDNVLVAELKAKPLLTHQIREAQKVDEELLAKRAECVLNKESEFQIDDDDCLRFRSRLCVPKNSELILIILNEAHCSRMAIHPGSTKMYNDLKR 209
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6WUQ3_9ROSI (Integrase, catalytic core OS=Gossypium australe OX=47621 GN=EPI10_006699 PE=4 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 5.212e-106
Identity = 161/240 (67.08%), Postives = 181/240 (75.42%), Query Frame = 0 
Query:   37 SVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDL 247
            ++ T APVLVQPESGKEFVIYSDA L GLGCVLMQEG+VV Y SRQLKPHEKNYPTH+LELAAIVFALKIWRHYL+ E+CHVFS+HKSLKYLMTQ+DLNLRQ R LELLKDYELVIDYHP KAN VADALSRKSLFALR++N                             K D++L+AKR +CV           D CLRFR H+CVPRN ELI +IL+EAH SR+ +HPGSTKMY+DL
Sbjct:   79 TLLTKAPVLVQPESGKEFVIYSDALLNGLGCVLMQEGKVVGYASRQLKPHEKNYPTHELELAAIVFALKIWRHYLYSEKCHVFSDHKSLKYLMTQKDLNLRQRRWLELLKDYELVIDYHPDKANFVADALSRKSLFALRSLNALLDFSDASFVIVELKVKPLFIKQICDAQKSDNELLAKRAQCVV----------DGCLRFRGHICVPRNPELIQVILSEAHNSRLPVHPGSTKMYHDL 308
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6WPN4_9ROSI (Integrase, catalytic core OS=Gossypium australe OX=47621 GN=EPI10_005181 PE=4 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 2.680e-105
Identity = 155/240 (64.58%), Postives = 184/240 (76.67%), Query Frame = 0 
Query:   37 SVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDL 247
            ++ T APVLVQPESGKEF++YSDASL GLGCVL+QEG+ +A+ SRQLK HEKNYPTHDLEL  IVF LKIWRHYLFGE+CH++++HKSLKYLMTQ +LNLRQ R LELLKDYELVI+YHPGKANVVADALSRKSLF  RAM+                             K D +++AKR +C  N +S F++D+D+CLRFR  +CVPRNSELI +ILNEAH SR+ +HPGS KMYNDL
Sbjct:   43 ALLTKAPVLVQPESGKEFIVYSDASLNGLGCVLIQEGKAIAHSSRQLKAHEKNYPTHDLELVVIVFVLKIWRHYLFGEKCHIYTDHKSLKYLMTQNELNLRQLRWLELLKDYELVINYHPGKANVVADALSRKSLFVPRAMSTRIDLGDDASVLAKLKVRSMFIRQICDAQKSDAEMMAKRDQCGLNSDSVFRVDNDDCLRFRDQICVPRNSELIQLILNEAHNSRLVVHPGSIKMYNDL 282
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6V9Q5_9ROSI (DNA/RNA polymerases superfamily protein OS=Gossypium australe OX=47621 GN=EPI10_000924 PE=4 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 9.903e-105
Identity = 157/239 (65.69%), Postives = 184/239 (76.99%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            T+A VL+QPESGKEF++YSD  L GLGC+LMQE +V+AY SRQ KPHEKNYPTHDLELAAIVF LKIWRHYLFGE+CH++++ KSLKYLMTQ+DLNLRQ R LELLKDYEL+IDYHPGKANVVAD LSRKSL+ALRAM+                             K D ++ AKR +C  N ESEF++D D CLRF+  +CVPRNSELISMILNEAH S +++HPGSTKMYNDL +
Sbjct:  231 TEALVLIQPESGKEFIVYSDVLLNGLGCLLMQERKVIAYTSRQFKPHEKNYPTHDLELAAIVFTLKIWRHYLFGEKCHIYTDRKSLKYLMTQKDLNLRQRRWLELLKDYELMIDYHPGKANVVADDLSRKSLYALRAMSNQIDLCDGSAVVANLKVKPMFAHQIYDAHKNDVEMTAKRTQCELNAESEFRVDSDGCLRFKDQICVPRNSELISMILNEAHNSHLTVHPGSTKMYNDLKQ 469
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6WS57_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_005840 PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.046e-104
Identity = 165/239 (69.04%), Postives = 190/239 (79.50%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            T+A VL QPESGKEF I+SDASL GLGCVLMQEG+V+AY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGE+CH++S+HKSLKYLMTQ+DLNLRQ R LELLKDYELVIDYHPGKANVVADALS+KSLFA+RA+N                             KVD KL+A R++C +  ES+FQID +NCL ++S LCVP++S+LI MILNEAH  R+SIH GSTKMYNDL +
Sbjct:  702 TEALVLTQPESGKEFTIFSDASLNGLGCVLMQEGKVIAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGEKCHIYSDHKSLKYLMTQKDLNLRQRRWLELLKDYELVIDYHPGKANVVADALSQKSLFAVRALNAQMAMSDDGSILAELQARPMFIQQICDAQKVDKKLIAIRIQCGNGTESDFQIDANNCLNYKSRLCVPKDSDLIQMILNEAHSGRLSIHSGSTKMYNDLKQ 940
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6WRG0_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_005648 PE=4 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 2.813e-104
Identity = 167/242 (69.01%), Postives = 191/242 (78.93%), Query Frame = 0 
Query:   37 SVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            ++ T+APVL QPESGKEF I+SDASL GLGCVLMQEG+V+AY SRQLKPHE+NYPTHDLELAAIVFALKIWRH+LFGE+CHV+S+HKSLKYLMTQ+DLNLRQ R LELLKDYELVIDYHPGKA VVADALS+KSLFALRA+N                             KVD+KL   R++C +  ES+FQID +NCL ++S LCVP NS+LI MILNEAH  RMSIHPGSTKMYNDL +
Sbjct:  793 ALLTEAPVLTQPESGKEFTIFSDASLNGLGCVLMQEGKVIAYASRQLKPHERNYPTHDLELAAIVFALKIWRHHLFGEKCHVYSDHKSLKYLMTQKDLNLRQRRWLELLKDYELVIDYHPGKAIVVADALSQKSLFALRALNARVATSEDGSIIAELQARPMFIQQICDAQKVDEKLAVIRIQCENATESDFQIDANNCLNYKSRLCVPMNSDLIQMILNEAHNGRMSIHPGSTKMYNDLKQ 1034
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Match: A0A5B6VY00_9ROSI (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_024057 PE=4 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 8.349e-104
Identity = 164/239 (68.62%), Postives = 187/239 (78.24%), Query Frame = 0 
Query:   40 TDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN-----------------------------KVDDKLVAKRVECVSNMESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR 249
            T+APVL QPE GKEF I+SDASL GLGCVLMQEG+V+AY SRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGE+CH++S+HKSLKYLMTQ+DLNLRQ R LELLKDY+LVIDYHPGKANVVADALSRKSLF LRA+N                             KVD+ L+A R +C S  ES+FQID ++CL ++  LCVP+NS+LI MIL EAH  R+SIHPGSTKMYNDL +
Sbjct:  646 TEAPVLTQPEPGKEFTIFSDASLNGLGCVLMQEGKVIAYASRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGEKCHIYSDHKSLKYLMTQKDLNLRQRRWLELLKDYDLVIDYHPGKANVVADALSRKSLFTLRALNARVAMSDDGSIVAELQARPMFIQQICDAQKVDEMLIAIRSQCGSGTESDFQIDANDCLNYKGRLCVPKNSDLIQMILCEAHSGRLSIHPGSTKMYNDLKQ 884
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.128e-24
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 0 
Query:   38 VTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSL 171
            + ++ P+L  P+  K+F + +DAS + LG VL Q+G  ++Y SR L  HE NY T + EL AIV+A K +RHYL G    + S+H+ L +L   +D N + +R    L +++  I Y  GK N VADALSR  L
Sbjct:  493 LISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKL 626
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.044e-23
Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 0 
Query:   44 VLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGER-CHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMNKVDDKLVAKRVECVSNMES 197
            +L  P+  K F + +DAS  G+G VL QEGR +   SR LK  E+NY T++ EL AIV+AL   +++L+G R  ++F++H+ L + +  R+ N +  R    +  +   + Y PGK N VADALSR++L AL+   + D   +   +     +E+
Sbjct:  485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNALQNEPQSDAATIHSELSLTYTVET 639
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.149e-23
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 0 
Query:   43 PVLVQPESGKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSR 168
            P+L  P+  K+FV+ +DAS L LG VL Q G  +++ SR L  HE NY   + EL AIV+A K +RHYL G +  + S+H+ L++L   ++   +  R    L +Y+  IDY  GK N VADALSR
Sbjct:  497 PILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.533e-17
Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 0 
Query:   32 AFWDL-SVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEG----RVVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGE-RCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSR 168
            +F DL S+   + +L  P   K F + +DAS   +G VL Q+     R +AY SR L   E+NY T + E+ AI+++L   R YL+G     V+++H+ L + +  R+ N +  R    +++Y   + Y PGK+NVVADALSR
Sbjct:  412 SFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSR 554
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.580e-17
Identity = 59/178 (33.15%), Postives = 91/178 (51.12%), Query Frame = 0 
Query:   32 AFWDLSVTTDAPVLVQ-PESGKEFVIYSDASLLGLGCVLMQEGR----VVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYELVIDYHPGKANVVADALSRKSLFALRAMN----KVDDKLVAKRVECVSNMESEFQ 200
            AF  L      P L+Q P+  KEF I +DAS    G VL Q        VAY SR     E N  T + ELAAI +A+  +R Y++G+   V ++H+ L YL +  + + + +R    L++Y   ++Y  GK N VADALSR ++  L+ +     KV  +  +++  C    + + Q
Sbjct:  593 AFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITIKELKDITGNILKVTTRFQSRQKSCAGKEQLDLQ 770
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.533e-15
Identity = 70/265 (26.42%), Postives = 120/265 (45.28%), Query Frame = 0 
Query:   11 IRAKFQPYLTRSLREILLRFGAFWDLSVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGR-----VVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFG--ERCHVFSNHKSLKYLMTQRD--LNLRQSRCLELLKDYELVIDYHPGKANVVADALSR--------------KSLFALRAMNKVDD---KLV------AKRVECVSN----MESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPG 239
            +R K+ P  T+++  I                PVL   +  K+ ++ +DAS + +G VL Q+        V Y S ++   + NY   D E+ AI+ +LK WRHYL    E   + ++H++L   +T      N R +R    L+D+   I+Y PG AN +ADALSR               S+  +  ++  DD   ++V       K +  ++N    +E   Q+ D   +  +  + +P +++L   I+ + H     IHPG
Sbjct:  674 VRWKWTPTQTQAIENIK---------QCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.533e-15
Identity = 70/265 (26.42%), Postives = 120/265 (45.28%), Query Frame = 0 
Query:   11 IRAKFQPYLTRSLREILLRFGAFWDLSVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGR-----VVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFG--ERCHVFSNHKSLKYLMTQRD--LNLRQSRCLELLKDYELVIDYHPGKANVVADALSR--------------KSLFALRAMNKVDD---KLV------AKRVECVSN----MESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPG 239
            +R K+ P  T+++  I                PVL   +  K+ ++ +DAS + +G VL Q+        V Y S ++   + NY   D E+ AI+ +LK WRHYL    E   + ++H++L   +T      N R +R    L+D+   I+Y PG AN +ADALSR               S+  +  ++  DD   ++V       K +  ++N    +E   Q+ D   +  +  + +P +++L   I+ + H     IHPG
Sbjct:  674 VRWKWTPTQTQAIENIK---------QCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.533e-15
Identity = 70/265 (26.42%), Postives = 120/265 (45.28%), Query Frame = 0 
Query:   11 IRAKFQPYLTRSLREILLRFGAFWDLSVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGR-----VVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFG--ERCHVFSNHKSLKYLMTQRD--LNLRQSRCLELLKDYELVIDYHPGKANVVADALSR--------------KSLFALRAMNKVDD---KLV------AKRVECVSN----MESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPG 239
            +R K+ P  T+++  I                PVL   +  K+ ++ +DAS + +G VL Q+        V Y S ++   + NY   D E+ AI+ +LK WRHYL    E   + ++H++L   +T      N R +R    L+D+   I+Y PG AN +ADALSR               S+  +  ++  DD   ++V       K +  ++N    +E   Q+ D   +  +  + +P +++L   I+ + H     IHPG
Sbjct:  674 VRWKWTPTQTQAIENIK---------QCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
[Close]
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.533e-15
Identity = 70/265 (26.42%), Postives = 120/265 (45.28%), Query Frame = 0 
Query:   11 IRAKFQPYLTRSLREILLRFGAFWDLSVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGR-----VVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFG--ERCHVFSNHKSLKYLMTQRD--LNLRQSRCLELLKDYELVIDYHPGKANVVADALSR--------------KSLFALRAMNKVDD---KLV------AKRVECVSN----MESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPG 239
            +R K+ P  T+++  I                PVL   +  K+ ++ +DAS + +G VL Q+        V Y S ++   + NY   D E+ AI+ +LK WRHYL    E   + ++H++L   +T      N R +R    L+D+   I+Y PG AN +ADALSR               S+  +  ++  DD   ++V       K +  ++N    +E   Q+ D   +  +  + +P +++L   I+ + H     IHPG
Sbjct:  674 VRWKWTPTQTQAIENIK---------QCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.533e-15
Identity = 70/265 (26.42%), Postives = 120/265 (45.28%), Query Frame = 0 
Query:   11 IRAKFQPYLTRSLREILLRFGAFWDLSVTTDAPVLVQPESGKEFVIYSDASLLGLGCVLMQEGR-----VVAYPSRQLKPHEKNYPTHDLELAAIVFALKIWRHYLFG--ERCHVFSNHKSLKYLMTQRD--LNLRQSRCLELLKDYELVIDYHPGKANVVADALSR--------------KSLFALRAMNKVDD---KLV------AKRVECVSN----MESEFQIDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPG 239
            +R K+ P  T+++  I                PVL   +  K+ ++ +DAS + +G VL Q+        V Y S ++   + NY   D E+ AI+ +LK WRHYL    E   + ++H++L   +T      N R +R    L+D+   I+Y PG AN +ADALSR               S+  +  ++  DD   ++V       K +  ++N    +E   Q+ D   +  +  + +P +++L   I+ + H     IHPG
Sbjct:  674 VRWKWTPTQTQAIENIK---------QCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929
The following BLAST results are available for this feature:
BLAST of genemark-At_01-g-46.90-mRNA-1 vs. NCBI nr
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gb|KAG8503209.1|1.370e-13177.25hypothetical protein CXB51_001194 [Gossypium anoma... [more]
gb|KAG8490788.1|1.289e-12579.75hypothetical protein CXB51_014002 [Gossypium anoma... [more]
gb|KAG8490817.1|8.948e-12579.50hypothetical protein CXB51_013992 [Gossypium anoma... [more]
gb|KAG8485714.1|1.751e-12478.48hypothetical protein CXB51_019031 [Gossypium anoma... [more]
ref|WP_180271009.1|2.392e-12480.62hypothetical protein, partial [Bacillus thuringien... [more]
gb|KAG8480932.1|9.243e-12481.17hypothetical protein CXB51_025599 [Gossypium anoma... [more]
gb|KAG8490789.1|1.179e-12379.75hypothetical protein CXB51_014001 [Gossypium anoma... [more]
gb|KAG8491584.1|5.212e-12078.24hypothetical protein CXB51_014656 [Gossypium anoma... [more]
gb|KAG8500640.1|1.493e-11989.39hypothetical protein CXB51_002642 [Gossypium anoma... [more]
gb|KAG8474462.1|2.214e-11986.54hypothetical protein CXB51_031417 [Gossypium anoma... [more]
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy TrEMBL
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5B6WYN1_9ROSI7.084e-10865.70Integrase OS=Gossypium australe OX=47621 GN=EPI10_... [more]
A0A5B6UZQ3_9ROSI4.063e-10765.29Integrase OS=Gossypium australe OX=47621 GN=EPI10_... [more]
A0A5B6V984_9ROSI9.656e-10771.13Reverse transcriptase OS=Gossypium australe OX=476... [more]
Q7XYU5_GOSHE9.940e-10776.56Integrase (Fragment) OS=Gossypium herbaceum OX=342... [more]
A0A5B6WUQ3_9ROSI5.212e-10667.08Integrase, catalytic core OS=Gossypium australe OX... [more]
A0A5B6WPN4_9ROSI2.680e-10564.58Integrase, catalytic core OS=Gossypium australe OX... [more]
A0A5B6V9Q5_9ROSI9.903e-10565.69DNA/RNA polymerases superfamily protein OS=Gossypi... [more]
A0A5B6WS57_9ROSI1.046e-10469.04Reverse transcriptase OS=Gossypium australe OX=476... [more]
A0A5B6WRG0_9ROSI2.813e-10469.01Reverse transcriptase OS=Gossypium australe OX=476... [more]
A0A5B6VY00_9ROSI8.349e-10468.62Reverse transcriptase OS=Gossypium australe OX=476... [more]
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
POL3_DROME8.128e-2441.79Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME3.044e-2336.13Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME4.149e-2343.65Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME1.533e-1737.06Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME6.580e-1733.15Retrovirus-related Pol polyprotein from transposon... [more]
TF28_SCHPO3.533e-1526.42Transposon Tf2-8 polyprotein OS=Schizosaccharomyce... [more]
TF27_SCHPO3.533e-1526.42Transposon Tf2-7 polyprotein OS=Schizosaccharomyce... [more]
TF26_SCHPO3.533e-1526.42Transposon Tf2-6 polyprotein OS=Schizosaccharomyce... [more]
TF25_SCHPO3.533e-1526.42Transposon Tf2-5 polyprotein OS=Schizosaccharomyce... [more]
TF23_SCHPO3.533e-1526.42Transposon Tf2-3 polyprotein OS=Schizosaccharomyce... [more]
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BLAST of genemark-At_01-g-46.90-mRNA-1 vs. ExPASy Swiss-Prot
Analysis Date: 2022-08-09 (BLASTP of NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for NSF v1.0 Gossypium hirsutum (AD1) 'Bar32' proteins
Date Performed: 2022-08-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.370coord: 50..119
e-value: 5.5E-8
score: 34.7
NoneNo IPR availablePANTHERPTHR24559:SF355PROTEIN, PUTATIVE-RELATEDcoord: 42..244
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 42..244
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 55..169
e-value: 3.56533E-55
score: 171.136
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 51..148
e-value: 5.3E-29
score: 100.6
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 40..154

Sequences
The following sequences are available for this feature:

mRNA sequence

>genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-46.90-mRNA-1; organism=Gossypium hirsutum; type=mRNA; length=750bp
ATGTGGTATCTGCATCGGGTATTTGAGTTGATCCGAGCAAAATTTCAGCC
ATACTTAACTAGAAGCCTCCGAGAAATATTACTGAGGTTTGGAGCTTTTT
GGGACTTGTCGGTTACTACAGACGCTCCAGTACTAGTGCAGCCTGAATCA
GGCAAAGAGTTTGTCATTTACAGTGATGCATCCTTACTTGGGTTGGGTTG
TGTATTGATGCAAGAAGGTCGAGTTGTAGCTTATCCGTCGAGGCAATTGA
AGCCACATGAGAAAAATTATCCAACCCATGATCTCGAATTAGCTGCCATC
GTATTCGCTTTGAAAATATGGCGACATTACTTATTTGGCGAGAGGTGCCA
TGTATTTTCGAATCACAAAAGTCTCAAATATTTGATGACTCAAAGAGATT
TGAATCTGCGACAAAGTCGTTGCCTTGAGTTGTTAAAAGATTATGAGCTT
GTCATTGACTATCACCCGGGAAAGGCTAATGTGGTTGCGGATGCTTTAAG
TCGTAAATCACTGTTTGCTTTACGAGCGATGAATAAAGTCGATGATAAAT
TGGTTGCAAAACGGGTTGAATGTGTTTCGAATATGGAATCAGAGTTTCAA
ATTGATGATGACAATTGTTTGAGGTTCAGAAGTCATTTGTGTGTTCCAAG
AAATTCAGAACTTATTTCGATGATTCTGAACGAAGCTCATTGTAGCCGAA
TGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATCTGAGTCGTTAG
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protein sequence of genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1

>genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1; organism=Gossypium hirsutum; type=polypeptide; length=249bp
MWYLHRVFELIRAKFQPYLTRSLREILLRFGAFWDLSVTTDAPVLVQPES
GKEFVIYSDASLLGLGCVLMQEGRVVAYPSRQLKPHEKNYPTHDLELAAI
VFALKIWRHYLFGERCHVFSNHKSLKYLMTQRDLNLRQSRCLELLKDYEL
VIDYHPGKANVVADALSRKSLFALRAMNKVDDKLVAKRVECVSNMESEFQ
IDDDNCLRFRSHLCVPRNSELISMILNEAHCSRMSIHPGSTKMYNDLSR
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mRNA from alignment at At01:46537967..46538928+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-46.90-mRNA-1; organism=Gossypium hirsutum; type=mRNA; length=962bp; location=Sequence derived from: At01:46537967..46538928+ (Gossypium hirsutum
ATGTGGTATCTGCATCGGGTATTTGAGTTGATCCGAGCAAAATTTCAGCC
ATACTTAACTAGAAGCCTCCGAGAAATATTACTGAGGTTTGGAGCTTTTT
GGGACTTGTCGGTTACTACAGACGGTTTGTAAAGGGTTTCTCGATGATAG
CCACACCAATGACGAAACTACTTCAAAAAGTTGTTAAGTTTGAATGGACA
GAAAAATGTCAGAAAAGTTTCGATCAACTAAAAACTTATTTGACTGTAGC
TCCAGTACTAGTGCAGCCTGAATCAGGCAAAGAGTTTGTCATTTACAGTG
ATGCATCCTTACTTGGGTTGGGTTGTGTATTGATGCAAGAAGGTCGAGTT
GTAGCTTATCCGTCGAGGCAATTGAAGCCACATGAGAAAAATTATCCAAC
CCATGATCTCGAATTAGCTGCCATCGTATTCGCTTTGAAAATATGGCGAC
ATTACTTATTTGGCGAGAGGTGCCATGTATTTTCGAATCACAAAAGTCTC
AAATATTTGATGACTCAAAGAGATTTGAATCTGCGACAAAGTCGTTGCCT
TGAGTTGTTAAAAGATTATGAGCTTGTCATTGACTATCACCCGGGAAAGG
CTAATGTGGTTGCGGATGCTTTAAGTCGTAAATCACTGTTTGCTTTACGA
GCGATGAATGTACACTTGTCTGTTCTATCCGATAATGTGTTAGTAGTAGA
ATTAAAGGCCAAACCATTGTTGATTTATCAAATTCGTGAAGCTTAGAAAG
TCGATGATAAATTGGTTGCAAAACGGGTTGAATGTGTTTCGAATATGGAA
TCAGAGTTTCAAATTGATGATGACAATTGTTTGAGGTTCAGAAGTCATTT
GTGTGTTCCAAGAAATTCAGAACTTATTTCGATGATTCTGAACGAAGCTC
ATTGTAGCCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGAT
CTGAGTCGTTAG
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Coding sequence (CDS) from alignment at At01:46537967..46538928+

>genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1 ID=genemark-At_01-g-46.90-mRNA-1_NSF-Bar32_v1; Name=genemark-At_01-g-46.90-mRNA-1; organism=Gossypium hirsutum; type=CDS; length=750bp; location=Sequence derived from: At01:46537967..46538928+ (Gossypium hirsutum
ATGTGGTATCTGCATCGGGTATTTGAGTTGATCCGAGCAAAATTTCAGCC
ATACTTAACTAGAAGCCTCCGAGAAATATTACTGAGGTTTGGAGCTTTTT
GGGACTTGTCGGTTACTACAGACGCTCCAGTACTAGTGCAGCCTGAATCA
GGCAAAGAGTTTGTCATTTACAGTGATGCATCCTTACTTGGGTTGGGTTG
TGTATTGATGCAAGAAGGTCGAGTTGTAGCTTATCCGTCGAGGCAATTGA
AGCCACATGAGAAAAATTATCCAACCCATGATCTCGAATTAGCTGCCATC
GTATTCGCTTTGAAAATATGGCGACATTACTTATTTGGCGAGAGGTGCCA
TGTATTTTCGAATCACAAAAGTCTCAAATATTTGATGACTCAAAGAGATT
TGAATCTGCGACAAAGTCGTTGCCTTGAGTTGTTAAAAGATTATGAGCTT
GTCATTGACTATCACCCGGGAAAGGCTAATGTGGTTGCGGATGCTTTAAG
TCGTAAATCACTGTTTGCTTTACGAGCGATGAATAAAGTCGATGATAAAT
TGGTTGCAAAACGGGTTGAATGTGTTTCGAATATGGAATCAGAGTTTCAA
ATTGATGATGACAATTGTTTGAGGTTCAGAAGTCATTTGTGTGTTCCAAG
AAATTCAGAACTTATTTCGATGATTCTGAACGAAGCTCATTGTAGCCGAA
TGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATCTGAGTCGTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR041373RT_RNaseH
IPR043502DNA/RNA_pol_sf