Homology
BLAST of GbM_A11G0905.1 vs.
Match:
tr|A0A7J8RUD9|A0A7J8RUD9_GOSDV (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_026718 PE=4 SV=1)
HSP 1 Score: 238.039 bits (606), Expect = 3.845e-76
Identity = 116/126 (92.06%), Postives = 118/126 (93.65%), Query Frame = 0
Query: 28 VGDMALTSFTVGTGLRPKTNGVSWASFVNEAVENVGAKQKENG-ALRVFFRVKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 152
+G LTSF VGTGLRPKTNGVSWASFVNEAVENVG KQKENG LRVFFRVKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVEN+YL GECMEVFDVSDENDNMQAQ
Sbjct: 174 IGTGQLTSFNVGTGLRPKTNGVSWASFVNEAVENVGEKQKENGGVLRVFFRVKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVENQYLFGECMEVFDVSDENDNMQAQ 299
BLAST of GbM_A11G0905.1 vs.
Match:
tr|A0A7J9GXH0|A0A7J9GXH0_9ROSI (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_012510 PE=4 SV=1)
HSP 1 Score: 219.164 bits (557), Expect = 1.305e-67
Identity = 114/147 (77.55%), Postives = 116/147 (78.91%), Query Frame = 0
Query: 28 VGDMALTSFTVGTGLRPKTNGVSWASFVNEAVENVGAKQKENG-ALRVFFRVKK--------------------DSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAIS-NSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 152
+G LTSF V TGLRPKTNGVSWASFVNEAVENVG KQKENG LRVFFRVKK DSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVM IS NSLDLIAVEN+YL GECMEVFDVSDENDNMQAQ
Sbjct: 239 IGTGQLTSFNVRTGLRPKTNGVSWASFVNEAVENVGEKQKENGGVLRVFFRVKKGNTSLDPQRHSIRVVPSIPSDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMTISINSLDLIAVENQYLFGECMEVFDVSDENDNMQAQ 385
BLAST of GbM_A11G0905.1 vs.
Match:
tr|A0A2P5XXD1|A0A2P5XXD1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12687 PE=4 SV=1)
HSP 1 Score: 155.221 bits (391), Expect = 2.338e-44
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0
Query: 78 VKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 152
+ DSDKENGELGWNDYHWQGKGAGMM+GDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ
Sbjct: 157 IPSDSDKENGELGWNDYHWQGKGAGMMRGDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 231 HSP 2 Score: 67.781 bits (164), Expect = 1.203e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0
Query: 1 MQSQAARKSGLGRATKKVRQREDDPSDVGDMAL 33
MQSQAARKSGLGRATKKVRQREDDPSDVGDMA+
Sbjct: 1 MQSQAARKSGLGRATKKVRQREDDPSDVGDMAV 33
BLAST of GbM_A11G0905.1 vs. NCBI nr
Match:
gb|MBA0617255.1| (hypothetical protein [Gossypium davidsonii])
HSP 1 Score: 238.039 bits (606), Expect = 7.992e-76
Identity = 116/126 (92.06%), Postives = 118/126 (93.65%), Query Frame = 0
Query: 28 VGDMALTSFTVGTGLRPKTNGVSWASFVNEAVENVGAKQKENG-ALRVFFRVKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 152
+G LTSF VGTGLRPKTNGVSWASFVNEAVENVG KQKENG LRVFFRVKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVEN+YL GECMEVFDVSDENDNMQAQ
Sbjct: 174 IGTGQLTSFNVGTGLRPKTNGVSWASFVNEAVENVGEKQKENGGVLRVFFRVKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVENQYLFGECMEVFDVSDENDNMQAQ 299
BLAST of GbM_A11G0905.1 vs. NCBI nr
Match:
gb|MBA0802190.1| (hypothetical protein [Gossypium harknessii])
HSP 1 Score: 219.164 bits (557), Expect = 2.712e-67
Identity = 114/147 (77.55%), Postives = 116/147 (78.91%), Query Frame = 0
Query: 28 VGDMALTSFTVGTGLRPKTNGVSWASFVNEAVENVGAKQKENG-ALRVFFRVKK--------------------DSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAIS-NSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 152
+G LTSF V TGLRPKTNGVSWASFVNEAVENVG KQKENG LRVFFRVKK DSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVM IS NSLDLIAVEN+YL GECMEVFDVSDENDNMQAQ
Sbjct: 239 IGTGQLTSFNVRTGLRPKTNGVSWASFVNEAVENVGEKQKENGGVLRVFFRVKKGNTSLDPQRHSIRVVPSIPSDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMTISINSLDLIAVENQYLFGECMEVFDVSDENDNMQAQ 385
BLAST of GbM_A11G0905.1 vs. NCBI nr
Match:
gb|PPS07946.1| (hypothetical protein GOBAR_AA12687 [Gossypium barbadense])
HSP 1 Score: 155.221 bits (391), Expect = 4.861e-44
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0
Query: 78 VKKDSDKENGELGWNDYHWQGKGAGMMKGDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 152
+ DSDKENGELGWNDYHWQGKGAGMM+GDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ
Sbjct: 157 IPSDSDKENGELGWNDYHWQGKGAGMMRGDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQAQ 231 HSP 2 Score: 67.781 bits (164), Expect = 2.501e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0
Query: 1 MQSQAARKSGLGRATKKVRQREDDPSDVGDMAL 33
MQSQAARKSGLGRATKKVRQREDDPSDVGDMA+
Sbjct: 1 MQSQAARKSGLGRATKKVRQREDDPSDVGDMAV 33
BLAST of GbM_A11G0905.1 vs. NCBI nr
Match:
gb|PPD69845.1| (hypothetical protein GOBAR_DD33275 [Gossypium barbadense])
HSP 1 Score: 78.5666 bits (192), Expect = 2.940e-14
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0
Query: 28 VGDMALTSFTVGTGLRPKTNGVSWASFVNEAVENVGAKQKENGAL 72
+G LTSF VGTGLRPKTNGVSWASFVNEAVENVG KQKENG +
Sbjct: 194 IGTGQLTSFNVGTGLRPKTNGVSWASFVNEAVENVGEKQKENGGV 238
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>GbM_A11G0905.1_HEAU-P90_v1 ID=GbM_A11G0905.1_HEAU-P90_v1; Name=GbM_A11G0905.1; organism=Gossypium barbadense; type=mRNA; length=459bp
ATGCAAAGTCAGGCGGCAAGAAAGAGTGGCTTAGGGAGGGCGACGAAGAA
AGTCAGGCAAAGGGAAGATGATCCCTCGGATGTTGGGGACATGGCGTTGA
CTAGTTTTACTGTAGGGACAGGCCTAAGGCCCAAAACCAATGGAGTTAGC
TGGGCAAGTTTCGTTAATGAAGCAGTGGAGAATGTGGGGGCGAAACAAAA
GGAAAATGGAGCATTGAGGGTTTTTTTTAGGGTTAAGAAAGACTCTGACA
AAGAGAATGGGGAATTGGGATGGAATGACTACCATTGGCAAGGTAAGGGA
GCAGGGATGATGAAAGGAGATTCTATTTCGGCCCAAGAGATGGTCATGGC
AATTTCAAATTCCTTAGATTTGATTGCGGTGGAAAACCGATATCTACTTG
GAGAGTGTATGGAAGTTTTCGACGTGTCAGACGAGAATGATAATATGCAA
GCTCAATGA
back to topprotein sequence of GbM_A11G0905.1_HEAU-P90_v1
>GbM_A11G0905.1_HEAU-P90_v1 ID=GbM_A11G0905.1_HEAU-P90_v1; Name=GbM_A11G0905.1_HEAU-P90_v1; organism=Gossypium barbadense; type=polypeptide; length=153bp
MQSQAARKSGLGRATKKVRQREDDPSDVGDMALTSFTVGTGLRPKTNGVS
WASFVNEAVENVGAKQKENGALRVFFRVKKDSDKENGELGWNDYHWQGKG
AGMMKGDSISAQEMVMAISNSLDLIAVENRYLLGECMEVFDVSDENDNMQ
AQ*
back to topmRNA from alignment at A11:7434385..7436018-
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>GbM_A11G0905.1_HEAU-P90_v1 ID=GbM_A11G0905.1_HEAU-P90_v1; Name=GbM_A11G0905.1; organism=Gossypium barbadense; type=mRNA; length=1634bp; location=Sequence derived from: A11:7434385..7436018- (Gossypium barbadense
ATGCAAAGTCAGGCGGCAAGAAAGAGTGGCTTAGGGAGGGCGACGAAGAA
AGTCAGGCAAAGGGAAGATGATCCCTCGGATGTTGGGGACATGGCGGTGG
ATAGAGGAGAAGAGGCCCCGGTCACCTTTAAGGATAAGCTTATTGCCTGG
GATAGAAATATAACAAAGGCGAGGAAGATTATGAAGATGACGATTTTGAT
TTAAAACAGGGTGTTAATGATTACTGAGATGGTGGATGGCATCCCGAATA
TAAAGTTTTCTGAGAGAGTTCATACGTTGATTCAAAGAAGTATGTCTAAG
TCCATTATCATGAAATTAATTGGTAGGAAGATTGGCTTCAGTGTGCTGAC
TAGTAAGATTATGGGTTATGGAAGCCAAGTGAAGCGTTTCAACTGATGGA
GTTAGCAAAATGACTATTATCTTGTTAAGTTTCAAGTAATGGAGGACTAT
ACTAAGGCGTTTTCGGAGGATCCATGGGTAATTTACAGGCAATACTTAAC
GGTGCAACCATGGTCGACGTCTTTCTTGACGGCTCAAAGCTATCCTCATC
AAGTGGTAGTATGGAAAGTCTTCCAGGGTTCTCCGGAGCTTTGTACAAGA
AATGCTTATTGAAGGCAGTGGGTAGTACAATTGGACATGTGATCAAGATA
AATGAGAACACTGACAACGGAGCTCCTGATCGATTTGCATGTATGACGGT
CAATGTTGATCTCAGGCAACCATTACTGTCGAAAATAAGGATTGAAGGCA
AAGTTCAAAGAACTGAGTATGAAGGGCTACCAAATGCGTGTTTGAATGCG
GTATTTTTGGCTATGCGAAAGAGGTTTGCCCAGAAGTTAGGAGAGAAAAC
CCAACGTCACATGATGATGAGGCCGATATAATTGTGCAGAATCTGGCACT
GGAGGTCCTTGACCGAAGGGGAAGGTAGAGTCGTATGGATCTTGGATGAT
CATTGCCCGGAAATCTAGGCATCCTTTGAGGAAGAATGATATCAGGGAGA
ATAATGTAATTGGGGAAAGTAATAAAAAGACAATTGTGCAGGGATCACAT
TTTAAATTTATTGCCGATTTAAAAGAGACTGAGATAGTGCACCAATCACA
AATTTCACAGAAGTGAGTAAAAGTATAGGGACTGGGCAGTTGACTAGTTT
TACTGTAGGGACAGGCCTAAGGCCCAAAACCAATGGAGTTAGCTGGGCAA
GTTTCGTTAATGAAGCAGTGGAGAATGTGGGGGCGAAACAAAAGGAAAAT
GGAGCATTGAGGGTTTTTTTTAGGGTTAAGAAAGGTAACACGTCTTTGGA
CCCTCAAAGGCATTCAATTGTAGTGTTAGGGGAGAACACTAACGTGACTG
AGATGGAAGACGAAAAATGAATGATGACCAGCGATTTTTAGAGGGAGGTC
CCTTCGATTCCATCAGACTCTGACAAAGAGAATGGGGAATTGGGATGGAA
TGACTACCATTGGCAAGGTAAGGGAGCAGGGATGATGAAAGGAGATTCTA
TTTCGGCCCAAGAGATGGTCATGGCAATTTCAAATTCCTTAGATTTGATT
GCGGTGGAAAACCGATATCTACTTGGAGAGTGTATGGAAGTTTTCGACGT
GTCAGACGAGAATGATAATATGCAAGCTCAATGA
back to topCoding sequence (CDS) from alignment at A11:7434385..7436018-
>GbM_A11G0905.1_HEAU-P90_v1 ID=GbM_A11G0905.1_HEAU-P90_v1; Name=GbM_A11G0905.1; organism=Gossypium barbadense; type=CDS; length=459bp; location=Sequence derived from: A11:7434385..7436018- (Gossypium barbadense
ATGCAAAGTCAGGCGGCAAGAAAGAGTGGCTTAGGGAGGGCGACGAAGAA
AGTCAGGCAAAGGGAAGATGATCCCTCGGATGTTGGGGACATGGCGTTGA
CTAGTTTTACTGTAGGGACAGGCCTAAGGCCCAAAACCAATGGAGTTAGC
TGGGCAAGTTTCGTTAATGAAGCAGTGGAGAATGTGGGGGCGAAACAAAA
GGAAAATGGAGCATTGAGGGTTTTTTTTAGGGTTAAGAAAGACTCTGACA
AAGAGAATGGGGAATTGGGATGGAATGACTACCATTGGCAAGGTAAGGGA
GCAGGGATGATGAAAGGAGATTCTATTTCGGCCCAAGAGATGGTCATGGC
AATTTCAAATTCCTTAGATTTGATTGCGGTGGAAAACCGATATCTACTTG
GAGAGTGTATGGAAGTTTTCGACGTGTCAGACGAGAATGATAATATGCAA
GCTCAATGA
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