Ghi_A05G07946

Transcript Overview
NameGhi_A05G07946
Unique NameGhi_A05G07946_WHU-TM1_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length921
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:15312307..15315443 -Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v12020-04-04
InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins2020-04-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
gdtwL0249Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0253Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL1451Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL1400Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL2304Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL2211Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3251Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3098Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hwtwL0264Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1364Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
fntwL0249Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL0250Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gautwL0754Gossypium australe (G2) genome CRI_v1.1Gossypium australe
fntwL1308Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL1469Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL2344Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL2310Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL3645Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhtwL4707Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL3260Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
abtwL0309Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abtwL1518Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
awtwL0260Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awtwL1329Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL1385Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gtbtwL0243Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL0242Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
grbtwL0234Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghttwL2186Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gktwL0816Gossypioides kirkii genome ISU_v3Gossypioides kirkii
hgstwL0249Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghtwL1440Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL1308Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gktwL1604Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghztwL1399Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghttwL3055Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
grbtwL1265Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghtwL2271Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
hgstwL1458Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghztwL2198Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghtwL3209Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL3095Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hgstwL2312Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL0345Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbtwL0964Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hjtwL0244Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hgstwL3247Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL1655Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbtwL3703Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hjtwL1373Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL2189Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rjtwL0405Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hjtwL3104Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rbtwL1215Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rbtwL1946Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
twtwL0281Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rjtwL2003Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
adtwL0252Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL0232Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL0253Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL1493Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL1424Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL1500Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntwL2266Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL2348Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL3280Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL3400Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL3314Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztwL0248Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1393Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL2193Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3083Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
twuhR2377Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2464Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtttwL1051Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtttwL1268Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtotwL1005Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtotwL1099Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtotwL1198Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
gtitwL0359Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dqitwL0649Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL0770Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL1000Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ndmtwL0261Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL1437Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL2276Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3190Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwL0230Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL1327Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2096Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2938Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtwL0233Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1306Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2087Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2933Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
jmbtwL0254Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL1414Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL2228Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3112Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
psctwL0221Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1322Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2081Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2926Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytwL0256Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1369Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL2157Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL3037Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftwL0255Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL1394Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL2189Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3078Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Gbscaffold12432.16.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
rna-gnl|WGS:JABEZX|Golob_00001336-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Golon.005G120900-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gene-E1A91_A05G120800v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
gene-E1A91_D05G122300v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
GB_D05G1141Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS_VKGI|Godar.A05G121300.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gbar_D05G011540.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Cotton_A_15077Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
Kirkii_Juiced.00g094450.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS:JABFAE|Goarm_00001173-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
gene-EPI10_033060-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
TURN.05g137080.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
rna-gnl|WGS_VKGE|Gotom.A05G122800.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS_VKGE|Gotom.D05G124000.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Cotton_D_gene_10003074Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rna-gnl|WGS:VKDL|Gobar.D05G116300.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
EVM_prediction_Ga05G1204Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Gar05G11730Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
D5.v1.pred_00001268-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
rna-gnl|WGS:JABFAD|Gohar_00001293-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
GB_A05G1157Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Ghe05G12260Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS_VKGI|Godar.D05G122200.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gbscaffold15272.2.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GhirPD0501T113800.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
mk-At_05-snapG-11.1677-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
maker-At_05-snap-gene-11.1677-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
maker-Dt_05-snap-gene-10.855-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
D05G11610.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gh_A05G100700.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Gohir.A05G114100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GhirPA0501T311300.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Gh_A05G0972Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gohir.A05G114100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GH_D05G1145Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GhM_A05G1261.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Ghir_D05G011450.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gh_D05G113000.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GH_A05G01035_HPF.2Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gohir.D05G114500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gh_D05G1081Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
maker-At_05_GB713-augustus-gene-10.207-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gohir.D05G114500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Ghicr24_D05G111800.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
maker-Dt_05_GB713-augustus-gene-9.354-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
GH_D05G01071_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
CotAD_01553Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Ghicr24_A05G117300.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
GH_A05G1145Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
A05G12770.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
mk-Dt_05-snapG-10.855-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GhM_D05G1278.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghi_A05G07946.geneGhi_A05G07946.gene_WHU-TM1_v1Gossypium hirsutumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A05G07946.CDS1Ghi_A05G07946.CDS1_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A05G07946.CDS2Ghi_A05G07946.CDS2_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A05G07946.CDS3Ghi_A05G07946.CDS3_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A05G07946.CDS4Ghi_A05G07946.CDS4_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A05G07946.CDS5Ghi_A05G07946.CDS5_WHU-TM1_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A05G07946_WHU-TM1_v1Ghi_A05G07946_WHU-TM1_v1Gossypium hirsutumpolypeptide
Ghi_A05G07946Ghi_A05G07946_WHU-TM1_v1-proteinGossypium hirsutumpolypeptide


InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037119Haem oxygenase HugZ-like superfamilyGENE3D3.20.180.10coord: 190..306
e-value: 2.2E-49
score: 168.5
IPR012349FMN-binding split barrelGENE3D2.30.110.10coord: 50..189
e-value: 3.9E-46
score: 158.9
IPR019595Domain of unknown function DUF2470PFAMPF10615DUF2470coord: 199..271
e-value: 4.5E-8
score: 33.6
NoneNo IPR availablePANTHERPTHR13343CREG1 PROTEINcoord: 6..291
NoneNo IPR availablePANTHERPTHR13343:SF22GLUTAMYL-TRNA REDUCTASE-BINDING PROTEIN, CHLOROPLASTICcoord: 6..291
NoneNo IPR availableSUPERFAMILY50475FMN-binding split barrelcoord: 61..280

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghi_A05G07946_WHU-TM1_v1 ID=Ghi_A05G07946_WHU-TM1_v1; Name=Ghi_A05G07946; organism=Gossypium hirsutum; type=mRNA; length=921bp
ATGAATCTCCAAATCCAAACTCAGTCTTTGTCAACACACTTTCCCCTTCC
ACCCTTCCCTCCAAAACCCAAATTCCTTCAAGCAAAACCCAAACCCTCCT
TCAAATTATGGTCCTCGCTCTCCACTGTTTCAGTCCCACCAACAAAAACC
AGCCACAAGCCATTTCCCGCCGAGGTTTCCAGGACCATAATGGAATTGTC
TTCTATGGGGACCCTTTCCACTCTAGCTCAAGATGGGTGGCCCTTGGGCG
TTGGTGTAAGGTTTGCTGTCGATGCTGAGGGCACCCCTGTTTTGTGCTTG
CCTCAACCTTCTCCTGATAACCGCTCCACCCTTCATGTTCAGTTAGATCA
ATGTGGGTTACGGACTCCTCAGTGTACAATACAGGGCAGTCTTACCAAAC
CAGCTGATGCAACCATTTTGAGGTGGTTTGATTCAGTATGGAAGAAGAGG
TTTGGAGAATCCGCCGATGTAGACAATCTATATACTGTTGACGTACAAAG
AGTACTTCAAATGGAAGACTTAAATGAGGATGGTGTATGGGTCACTTCAT
CAGATTATAAAAATGCAAATCCTGATCCACTGCGCAACTCTGCTGAAGAA
ATTGTCAATGAAATTAATACCAATAACAGGGAAGATGTCCACCGCTTTTG
CAATGTCTACGTTGATTTGGACTTCCAGGTATCAGAAGCAAAGATGATTT
GGGTTGATTGTCTTGGCTTCGACTTGCGAATCTACTCTCCTCAGAAGGGT
GTATTTGATGTTCGAATTCCTTTTCCCCGGGAAGTAACCGATGAGAAGGG
TGCTAAATCCTCATTCAATGGTATGTCACAACTTGCATGGGAGGTGGAGA
AAAATTTCCATGCCCCTGACTTTGAGAAGGTGAAACAATTAAAGAAAATT
GTTTACAGCGGAGGGCGATAA
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protein sequence of Ghi_A05G07946_WHU-TM1_v1

>Ghi_A05G07946_WHU-TM1_v1 ID=Ghi_A05G07946_WHU-TM1_v1; Name=Ghi_A05G07946_WHU-TM1_v1; organism=Gossypium hirsutum; type=polypeptide; length=307bp
MNLQIQTQSLSTHFPLPPFPPKPKFLQAKPKPSFKLWSSLSTVSVPPTKT
SHKPFPAEVSRTIMELSSMGTLSTLAQDGWPLGVGVRFAVDAEGTPVLCL
PQPSPDNRSTLHVQLDQCGLRTPQCTIQGSLTKPADATILRWFDSVWKKR
FGESADVDNLYTVDVQRVLQMEDLNEDGVWVTSSDYKNANPDPLRNSAEE
IVNEINTNNREDVHRFCNVYVDLDFQVSEAKMIWVDCLGFDLRIYSPQKG
VFDVRIPFPREVTDEKGAKSSFNGMSQLAWEVEKNFHAPDFEKVKQLKKI
VYSGGR*
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mRNA from alignment at A05:15312307..15315443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghi_A05G07946_WHU-TM1_v1 ID=Ghi_A05G07946_WHU-TM1_v1; Name=Ghi_A05G07946; organism=Gossypium hirsutum; type=mRNA; length=3137bp; location=Sequence derived from: A05:15312307..15315443- (Gossypium hirsutum
ATGAATCTCCAAATCCAAACTCAGTCTTTGTCAACACACTTTCCCCTTCC
ACCCTTCCCTCCAAAACCCAAATTCCTTCAAGCAAAACCCAAACCCTCCT
TCAAATTATGGTCCTCGCTCTCCACTGTTTCAGTCCCACCAACAAAAACC
AGCCACAAGCCATTTCCCGCCGAGGTTTCCAGGACCATAATGGAATTGTC
TTCTATGGGGACCCTTTCCACTCTAGCTCAAGATGGGTGGCCCTTGGGCG
TTGGTGTAAGGTTTGCTGTCGATGCTGAGGGCACCCCTGTTTTGTGCTTG
CCTCAACCTTCTCCTGATAACCGCTCCACCCTTCATGTTCAGGTAAATTT
CTTTTATATACATATGTCTCTATGTAAACTTCTCCATAGACACTGTTGAA
ATTGTCTTTTTTTTTTAGATATTGACATAATTTACATGTTTATATTTGGA
GATTTTTATTCATATGATTTGCTTTCGATCAGTTAGATCAATGTGGGTTA
CGGACTCCTCAGTGTACAATACAGGGCAGTCTTACCAAACCAGCTGATGC
AACCATTTTGAGGGTAAGGCTGCTGCTTCTTTTTTTTCAAGTGATATTAC
TTTATAATTTATACATGATGTTTTACCAACACTATGTGGCAATTTAGGAT
AGTATTTTGAAGCTAATCTTGGACACAGACCAAACCGGGATAGTTGACTA
CAACAATTTTCTCGACTCAACTCCAATTGTAGAAGCTTTATCATTATGTG
TGTGTATGTTGGTGTTTGGTTTATGTAGGATTCACAACTCTACTTGTTAA
TCACTTTTAATCCTAGTTTATAAATAGGAAAAGTAAAGAAACTTATATTG
AGGATATAACTTGAGAGGAATTTCTATTCTTTATTCGGCTGCTAGAATTT
CTTAAAGTTTATGATATTTGAATTTTCCCATACCCAATTGTTATGAAAAT
TATCCTCAAGTTTTCCTTTTTTCTCATTTTTGGTATTGCGCAAGTTCCAA
ATATTGTTGGTGTTTTGCCTATGAATCCCGGATAGAATGATAAATTTTAG
AGGTAAATGTTTAGCGGTTTTTAGCATTGAAGATGGTGTTTGTCGGGAGC
AGTTTATGTTTACATCCGTATTCCGTAAACGGTTAAAGCGTCCACTCCTT
CCTCTCTCTTATTTCCATTTTTGTCTATCTTCAATTTTCTCTGAACCTAA
ACCAACTTTCTGATTTGGGATTTTAATTGAATATTGCCTTCTTCGCTTGT
ATCTCAGAAGTAGGGATCTAAGGTTAGAGGGCTTGTGTTTATTCATACAC
TGTGCTAAGCAGTTATCTGATTGCTCATTTTTCATCTCTCTGCTGTTAGA
TTAGGGTCTGATAAATCAACTTTATATGAATTTTAAATTGAATATTTCTT
CATCAGTGGTTTGATTCAGTATGGAAGAAGAGGTTTGGAGAATCCGCCGA
TGTAGACAATCTATATACTGTTGACGTACAAAGAGTACTTCAAATGGAAG
ACTTAAATGAGGTATACCGAGAATTTTTCTGTTGTCTATGCTTTGTGTAA
TAATTTTAGACTACCGATTTCTATTAGAATGTTATATTTTAGTTAGAAGT
GATATGGTCAATTGTATTAATTTCAGTATGCTGCTTTTAACTCATGCAGG
ATGGTGTATGGGTCACTTCATCAGATTATAAAAATGCAAATCCTGATCCA
CTGCGCAACTCTGCTGAAGAAATTGTCAATGAAATTAATACCAATAACAG
GGAAGATGTCCACCGCTTTTGCAATGTCTACGTTGATTTGGACTTCCAGG
TGCATATCCACCGATTTTATCCTTCTTTATATACAATATCTGCTCTATAT
TTTACTATTGATTACTGCTTATCTAGCGTGTTGTGCGAGAAATCCTCAAA
TTAGTCCAATCCATTTCCATCTCTTTTTTTTTTTGTAAATTTAAAATTTG
AGAGGGCATATTTTGCTTAATGTTTCATTTGTTATAACTTGCCTTAGGAA
CTACCAATAGAAACCTAAATCCAAAGTTCATTTGGTGCACCCGTGTTTAC
CTTTCTGATCTTTCTGTTGGTTTAAAGAATATAAAATTATGTCAAATTAA
ACCAGGTGAAAGCAAATGGAAACAAAGCATGATCTAACTCTTGCTTCCTT
GAAGAGAGTTATGGGAAAATGGATGTGGAGCTCAAATGTTGTGTCTTAGT
TTTTTCTGCTTTCAAGGGTTGGAGTACCACTTGCCACCAGTAATGGAAAA
CTATAATTGAGCGTCTGAGCTCTGATCTTTTATCAGATAATTAGGACCAA
GCAGATATGCCTTGTTTTAAGATGATGCTTGCAATTGTGGAACTTTTGAA
CACTTCTTGTGAACTTATAATTGTTTGGACAATGATGGAAATTTTGGTAT
TGACTTACTCAATTAGTAGTTAATTTATCAATGTGCTTCAACTTTTGGAT
TTATGAGTAGTTTTATCACAAATATGCTGAGTTAAAGATCTTAGGGGGGG
AGAGAGAGAAGGTGAATTCACTCACTTTATGTTATCCATCTTTACCTACA
GGTGTCTTGTCTACAGATTCCATCAGTTTTCGGTTTCTTCTTGCTGTCTC
ATATGCATGCTGCGAATGTTATTAGTGTCCTTCACATATTCATTGTGTTA
TTCTGAATGATTAAAAGTTCTTTTGCTTGTGATAACATGCTTTGCATGAT
GGAAAGATGCTATTTCACTGGTATCTGGAACATAAAACGAGCACCAATGA
CATTGAATCATTTCGTGTGATAAAATTTTCAAATGTCCATGATTATAATC
AAGAGTTGAAGTTGCATGCTTGCCTTTCACCTAAAATGCATGCTCAGACT
TAAGTTTGTGTAATACTCTTATGGGGTTGCATATTGCATGGCAGGTATCA
GAAGCAAAGATGATTTGGGTTGATTGTCTTGGCTTCGACTTGCGAATCTA
CTCTCCTCAGAAGGGTGTATTTGATGTTCGAATTCCTTTTCCCCGGGAAG
TAACCGATGAGAAGGGTGCTAAATCCTCATTCAATGGTATGTCACAACTT
GCATGGGAGGTGGAGAAAAATTTCCATGCCCCTGACTTTGAGAAGGTGAA
ACAATTAAAGAAAATTGTTTACAGCGGAGGGCGATAA
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Coding sequence (CDS) from alignment at A05:15312307..15315443-

>Ghi_A05G07946_WHU-TM1_v1 ID=Ghi_A05G07946_WHU-TM1_v1; Name=Ghi_A05G07946; organism=Gossypium hirsutum; type=CDS; length=921bp; location=Sequence derived from: A05:15312307..15315443- (Gossypium hirsutum
ATGAATCTCCAAATCCAAACTCAGTCTTTGTCAACACACTTTCCCCTTCC
ACCCTTCCCTCCAAAACCCAAATTCCTTCAAGCAAAACCCAAACCCTCCT
TCAAATTATGGTCCTCGCTCTCCACTGTTTCAGTCCCACCAACAAAAACC
AGCCACAAGCCATTTCCCGCCGAGGTTTCCAGGACCATAATGGAATTGTC
TTCTATGGGGACCCTTTCCACTCTAGCTCAAGATGGGTGGCCCTTGGGCG
TTGGTGTAAGGTTTGCTGTCGATGCTGAGGGCACCCCTGTTTTGTGCTTG
CCTCAACCTTCTCCTGATAACCGCTCCACCCTTCATGTTCAGTTAGATCA
ATGTGGGTTACGGACTCCTCAGTGTACAATACAGGGCAGTCTTACCAAAC
CAGCTGATGCAACCATTTTGAGGTGGTTTGATTCAGTATGGAAGAAGAGG
TTTGGAGAATCCGCCGATGTAGACAATCTATATACTGTTGACGTACAAAG
AGTACTTCAAATGGAAGACTTAAATGAGGATGGTGTATGGGTCACTTCAT
CAGATTATAAAAATGCAAATCCTGATCCACTGCGCAACTCTGCTGAAGAA
ATTGTCAATGAAATTAATACCAATAACAGGGAAGATGTCCACCGCTTTTG
CAATGTCTACGTTGATTTGGACTTCCAGGTATCAGAAGCAAAGATGATTT
GGGTTGATTGTCTTGGCTTCGACTTGCGAATCTACTCTCCTCAGAAGGGT
GTATTTGATGTTCGAATTCCTTTTCCCCGGGAAGTAACCGATGAGAAGGG
TGCTAAATCCTCATTCAATGGTATGTCACAACTTGCATGGGAGGTGGAGA
AAAATTTCCATGCCCCTGACTTTGAGAAGGTGAAACAATTAAAGAAAATT
GTTTACAGCGGAGGGCGATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR037119Haem_oxidase_HugZ-like_sf
IPR012349Split_barrel_FMN-bd
IPR019595DUF2470
Vocabulary: Molecular Function
TermDefinition
GO:0048037obsolete cofactor binding