Ghi_A09G07416

Transcript Overview
NameGhi_A09G07416
Unique NameGhi_A09G07416_WHU-TM1_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length1509
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:69346813..69348448 -Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v12020-04-04
InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins2020-04-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
gdtwL0140Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0145Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL0486Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0466Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL0942Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0917Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bztwL0923Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL1192Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL1156Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL2185Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL2107Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bztwL2422Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3874Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3734Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hwtwL0141Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL0497Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL2002Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gautwL0117Gossypium australe (G2) genome CRI_v1.1Gossypium australe
fntwL0141Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gautwL0431Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gautwL0435Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gbtwL0136Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
fntwL0487Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dttwL0222Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
fntwL0912Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
bhtwL0664Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL0961Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbtwL1211Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dttwL1045Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gautwL1657Gossypium australe (G2) genome CRI_v1.1Gossypium australe
bhtwL1592Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
fntwL1956Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL2205Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL3413Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhtwL6179Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhtwL6201Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL3920Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
abtwL1814Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abtwL3009Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abtwL3560Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
awtwL0476Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL0139Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
awtwL0898Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL0910Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
awtwL1955Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
gktwL0125Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghtwL0127Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL0142Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL0134Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gktwL0545Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghtwL0481Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
grbtwL0140Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghttwL2076Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL0937Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
grbtwL0458Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghttwL2396Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghztwL0921Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gtbtwL0906Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
hgstwL0134Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
grbtwL0883Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghztwL1161Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gktwL1493Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gktwL1834Gossypioides kirkii genome ISU_v3Gossypioides kirkii
hgstwL0938Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghtwL2150Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
hgstwL1197Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gtbtwL1952Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL2080Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghttwL3685Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL2517Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
grbtwL1867Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghztwL2421Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hbtwL0276Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hgstwL2192Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgstwL2543Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hjtwL0131Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghtwL3843Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
actwL0620Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
ghztwL3713Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hbtwL2139Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
actwL1153Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hjtwL0899Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbtwL2975Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hgstwL3869Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL2373Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hjtwL2073Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rbtwL0336Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rjtwL0830Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hjtwL3743Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rjtwL1395Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
twtwL0152Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rjtwL1625Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rbtwL2861Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
adtwL0139Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adtwL0507Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL0115Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hntwL0117Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL0140Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntwL0433Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adtwL0982Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adtwL1232Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL0920Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL0972Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL2210Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adtwL2554Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL2158Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL2232Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntwL2487Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL2586Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL3933Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL4048Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL3959Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztwL0135Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL0466Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL0913Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL0917Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1147Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL2084Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL2405Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3733Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
twuhR2867Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2928Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2996Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtttwL0219Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtttwL0642Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtotwL0217Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtotwL0614Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dfitwL0246Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfitwL0660Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfitwL1449Gossypium aridum (D4) genome ISU_v1Gossypium aridum
gtitwL0918Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gtitwL1401Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dritwL0629Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dritwL1081Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dqitwL0114Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL0277Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL0910Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ndmtwL0145Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL0484Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL0941Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL0943Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL2163Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL2492Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3860Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwL0125Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL0440Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL0865Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2003Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2296Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL3553Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtwL0128Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL0440Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL0860Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1994Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2306Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL3546Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
jmbtwL0138Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL0925Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL1175Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL2117Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3760Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
psctwL0123Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL0444Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL0866Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1993Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2286Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL3550Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytwL0150Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL0466Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL0900Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1130Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL2052Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL2374Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL3680Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftwL0140Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL0482Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL0917Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL2080Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL2423Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3703Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Gothu.00040308-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
Gbscaffold6264.8.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
rna-gnl|WGS_VKGI|Godar.D09G150100.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gorai.007G359700.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Gbscaffold15384.6.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
rna-gnl|WGS:JABFAA|Goari_00019583-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
rna-gnl|WGS:JABFAD|Gohar_00020598-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
rna-gnl|WGS:JABFAE|Goarm_00014404-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
Gar09G15900Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rna-gnl|WGS:VKDL|Gobar.D09G135500.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gene-E1A91_A11G350300v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS:JABEZZ|Gorai_00014599-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
D5.v1.pred_00029155-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
rna-gnl|WGS:JABEZX|Golob_00008400-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Gorai.006G138000.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Ghe09G16660Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
D5.v1.pred_00004851-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
rna-gnl|WGS:JABFAA|Goari_00008460-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
rna-gnl|WGS_VKGI|Godar.A09G152900.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Ghe11G42770Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS_VKGI|Godar.A11G372300.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gbscaffold13262.7.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
Cotton_A_07812Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
rna-gnl|WGS:VKDL|Gobar.A09G131700.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
EVM_prediction_Ga09G1413Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
gene-EPI10_022589-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
Gbar_A09G013300.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gene-EPI10_018349-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
EVM0002840.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
TURN.09g250640.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Gbar_D09G013050.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
rna-gnl|WGS_VKGE|Gotom.D09G145500.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
GB_A09G1518Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Cotton_D_gene_10020405Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
Kirkii_Juiced.00g325080.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
Kirkii_Juiced.00g240850.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gene-E1A91_D11G375400v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gar11G41960Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Cotton_A_06637Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
rna-gnl|WGS_VKGE|Gotom.D11G390300.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gene-E1A91_D09G140700v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
gene-E1A91_A09G133600v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
GB_A11G3626Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:VKDL|Gobar.D11G367500.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
mikado.F09G4152.1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
GB_D09G1353Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:JABEZX|Golob_00016610-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
EVM_prediction_Ga11G0228Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
GB_D11G3641Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Golon.011G379900-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GH_A11G3557Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GH_D11G03741_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
genemark-At_09-proG-14.136-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GhirPA0901T127800.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
GH_A09G01380_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gh_D11G3139Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
D11G37920.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gh_A11G2790Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghicr24_A09G144000.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gh_A09G142300.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GhM_D11G3835.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_A09G1159Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GhM_A09G1573.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
A11G38170.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
genemark-At_09-g-14.136-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Ghir_A09G013240.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
genemark-Dt_11-proG-2.45-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
maker-At_11-aug-g-2.203-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Ghir_A11G033900.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
maker-Dt_11_GB713-augustus-gene-72.238-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gh_D11G365000.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
genemark-Dt_11-g-2.45-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Gohir.A09G123700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
mk-At_11-augustus-gene-2.203-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Gohir.A09G123700.2Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
genemark-At_09_GB713-gene-74.353-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Ghicr24_D11G347600.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
A09G17600.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Ghir_D11G034480.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
GH_D11G3583Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GhM_A11G3922.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
GH_A11G03721_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
genemark-At_11_GB713-gene-2.183-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
CotAD_17232Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
GH_A09G1400Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghi_A09G07416.geneGhi_A09G07416.gene_WHU-TM1_v1Gossypium hirsutumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A09G07416.CDS1Ghi_A09G07416.CDS1_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A09G07416.CDS2Ghi_A09G07416.CDS2_WHU-TM1_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A09G07416Ghi_A09G07416_WHU-TM1_v1-proteinGossypium hirsutumpolypeptide
Ghi_A09G07416_WHU-TM1_v1Ghi_A09G07416_WHU-TM1_v1Gossypium hirsutumpolypeptide


InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008166Glycosyltransferase family 92PFAMPF01697Glyco_transf_92coord: 240..487
e-value: 4.7E-35
score: 121.5
NoneNo IPR availablePANTHERPTHR21461:SF56GALACTAN BETA-1,4-GALACTOSYLTRANSFERASE GALS1coord: 1..498
NoneNo IPR availablePANTHERPTHR21461UNCHARACTERIZEDcoord: 1..498

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghi_A09G07416_WHU-TM1_v1 ID=Ghi_A09G07416_WHU-TM1_v1; Name=Ghi_A09G07416; organism=Gossypium hirsutum; type=mRNA; length=1509bp
ATGAGGAAAGAAGCAGTGCCCTCCACCGCCCCTTTCACCGCCACCACCGT
TGGCAAGAAGCTATTCCTTTGCTTTGAAACTAAACCCTTTGTTGTTACAT
TGCTTGCTCTTACTTTAGTTATGCTTCTCTGGAACTTCCCTCCTTACTAT
CAAAACCTCTCTACTACCCGTCCCTGTTCAGCTGCTCCTCTCGCCTCAGT
AGTCGCTGCCGCCTCCACTAGCTTATTCTCCACCAATGCATCACTCCCTT
ATACAGCCACCCCCGCAGGTGAAAAGAAGTACTACTCGGATCCTAAAGTT
AAACCCAGGGACCCCAACAAGCGGGTCTTCGAGGCTTACGGTAACGCTGC
TGCTTTGTTTGTGCAGATGGGTGCTTACAGGGGCGGTCCTACAACATTCG
CGGTGGTGGGATTGGCTTCCAAACCTATTCACGTTTTCGGCCGCCCCTGG
TACAAATGTGAATGGATCTCAAATAATGGGTCATCTTTCAGAGCCAAGGC
CTACAAAATGCTTCCGGATTGGGGGTATGGGCGTGTTTACACCGTGGTGG
TGGTGAATTGCACTTTCCCAGTCAACCCAAACCAAGACAACCTTGGTGGT
AAGCTGATGATCAATGCCTACTACGGTGAGTCCCCAAGGAAGTACGAGAG
GTTCACAGCGTTGGAGGAGACCCCTGGATCTTACAATGCCGCCAAGTACC
GGCCACCATTTCAGTACGAATATTTGTACTGTGGGTCGTCTCTGTACGGG
AACCTCAGCGCTGACAGGATGAGAGAATGGATGGCTTACCACGCCTGGTT
CTTTGGGGCAAGCTCGCATTTCGTGTTTCATGATGCGGGCGGGGTCTCCC
CGGAGGTCAGAGCGGCTCTCGAACCTTGGGTGCGTGCCGGAAGGGCTACG
ATTCAAGACATTCGGGACCAAGAGCAGTTCGATGGGTATTATTATAACCA
GTTTTTGGTGGTGAATGATTGTTTGCATCGCTATCGACACGCTGCCAATT
GGACTTTCTACTTTGATGTGGACGAGTATATCTATTTACCTGATGGAAAC
ACTTTGGAGTCGGTGTTAAATGAATTCTCCGCTTATACACAGTTTACTAT
TGAGCAGAATCCAATGTCCAGCCTGCTCTGCCTAAATGATTCCTCTCAAC
AATATTCCAGGCAATGGGGATTCGAGAAGCTTCTGTTTAGAGAATCAAGA
ACGGGAATTCGGCGTGACAGGAAATATGCAATTCAGGCGAAGAATGCATT
CGCAACGGGAGTGCATATGTCGGAGAATGTTATTGGGAAAACATTACATA
AAACAGAAACAAAGATTCGTTATTATCACTATCACAACACCATTACCGTA
CACCAAGAGCTATGCAGAGAGTACCTCCCTCCCTCTGCCAAAAACAATGT
CACTTGGTTCAATAAGCTACCCTATGTCTACGATGATAACATGAAGAAAC
TGGCCAACACCATCAAGGAATTCGAGCATAAAACCATTGGAGACCTCGGT
TCTCTATGA
back to top

protein sequence of Ghi_A09G07416_WHU-TM1_v1

>Ghi_A09G07416_WHU-TM1_v1 ID=Ghi_A09G07416_WHU-TM1_v1; Name=Ghi_A09G07416_WHU-TM1_v1; organism=Gossypium hirsutum; type=polypeptide; length=503bp
MRKEAVPSTAPFTATTVGKKLFLCFETKPFVVTLLALTLVMLLWNFPPYY
QNLSTTRPCSAAPLASVVAAASTSLFSTNASLPYTATPAGEKKYYSDPKV
KPRDPNKRVFEAYGNAAALFVQMGAYRGGPTTFAVVGLASKPIHVFGRPW
YKCEWISNNGSSFRAKAYKMLPDWGYGRVYTVVVVNCTFPVNPNQDNLGG
KLMINAYYGESPRKYERFTALEETPGSYNAAKYRPPFQYEYLYCGSSLYG
NLSADRMREWMAYHAWFFGASSHFVFHDAGGVSPEVRAALEPWVRAGRAT
IQDIRDQEQFDGYYYNQFLVVNDCLHRYRHAANWTFYFDVDEYIYLPDGN
TLESVLNEFSAYTQFTIEQNPMSSLLCLNDSSQQYSRQWGFEKLLFRESR
TGIRRDRKYAIQAKNAFATGVHMSENVIGKTLHKTETKIRYYHYHNTITV
HQELCREYLPPSAKNNVTWFNKLPYVYDDNMKKLANTIKEFEHKTIGDLG
SL*
back to top

mRNA from alignment at A09:69346813..69348448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghi_A09G07416_WHU-TM1_v1 ID=Ghi_A09G07416_WHU-TM1_v1; Name=Ghi_A09G07416; organism=Gossypium hirsutum; type=mRNA; length=1636bp; location=Sequence derived from: A09:69346813..69348448- (Gossypium hirsutum
ATGAGGAAAGAAGCAGTGCCCTCCACCGCCCCTTTCACCGCCACCACCGT
TGGCAAGAAGCTATTCCTTTGCTTTGAAACTAAACCCTTTGTTGTTACAT
TGCTTGCTCTTACTTTAGTTATGCTTCTCTGGAACTTCCCTCCTTACTAT
CAAAACCTCTCTACTACCCGTCCCTGTTCAGCTGCTCCTCTCGCCTCAGT
AGTCGCTGCCGCCTCCACTAGCTTATTCTCCACCAATGCATCACTCCCTT
ATACAGCCACCCCCGCAGGTGAAAAGAAGTACTACTCGGATCCTAAAGTT
AAACCCAGGGACCCCAACAAGCGGGTCTTCGAGGCTTACGGTAACGCTGC
TGCTTTGTTTGTGCAGATGGGTGCTTACAGGGGCGGTCCTACAACATTCG
CGGTGGTGGGATTGGCTTCCAAACCTATTCACGTTTTCGGCCGCCCCTGG
TACAAATGTGAATGGATCTCAAATAATGGGTCATCTTTCAGAGCCAAGGC
CTACAAAATGCTTCCGGATTGGGGGTATGGGCGTGTTTACACCGTGGTGG
TGGTGAATTGCACTTTCCCAGTCAACCCAAACCAAGACAACCTTGGTGGT
AAGCTGATGATCAATGCCTACTACGGTGAGTCCCCAAGGAAGTACGAGAG
GTTCACAGCGTTGGAGGAGACCCCTGGATCTTACAATGCCGCCAAGTACC
GGCCACCATTTCAGTACGAATATTTGTACTGTGGGTCGTCTCTGTACGGG
AACCTCAGCGCTGACAGGATGAGAGAATGGATGGCTTACCACGCCTGGTT
CTTTGGGGCAAGCTCGCATTTCGTGTTTCATGATGCGGGCGGGGTCTCCC
CGGAGGTCAGAGCGGCTCTCGAACCTTGGGTGCGTGCCGGAAGGGCTACG
ATTCAAGACATTCGGGACCAAGAGCAGTTCGATGGGTATTATTATAACCA
GTTTTTGGTGGTGAATGATTGTTTGCATCGCTATCGACACGCTGCCAATT
GGACTTTCTACTTTGATGTGGACGAGTATATCTATTTACCTGATGGAAAC
ACTTTGGAGTCGGTGTTAAATGAATTCTCCGCTTATACACAGTTTACTAT
TGAGCAGAATCCAATGTCCAGCCTGCTCTGCCTAAATGATTCCTCTCAAC
AATATTCCAGGTGATCTCATCACTCACCCCATCTGTTTATTTTCTCTAGA
AAATTACAGATGAAAGAGCCAAGTTGGGTCTTTAATGGCAAGTCGCAGAA
AGATTATGAAAATGACATACGTTGTTCATCTTGGCAGGCAATGGGGATTC
GAGAAGCTTCTGTTTAGAGAATCAAGAACGGGAATTCGGCGTGACAGGAA
ATATGCAATTCAGGCGAAGAATGCATTCGCAACGGGAGTGCATATGTCGG
AGAATGTTATTGGGAAAACATTACATAAAACAGAAACAAAGATTCGTTAT
TATCACTATCACAACACCATTACCGTACACCAAGAGCTATGCAGAGAGTA
CCTCCCTCCCTCTGCCAAAAACAATGTCACTTGGTTCAATAAGCTACCCT
ATGTCTACGATGATAACATGAAGAAACTGGCCAACACCATCAAGGAATTC
GAGCATAAAACCATTGGAGACCTCGGTTCTCTATGA
back to top

Coding sequence (CDS) from alignment at A09:69346813..69348448-

>Ghi_A09G07416_WHU-TM1_v1 ID=Ghi_A09G07416_WHU-TM1_v1; Name=Ghi_A09G07416; organism=Gossypium hirsutum; type=CDS; length=1509bp; location=Sequence derived from: A09:69346813..69348448- (Gossypium hirsutum
ATGAGGAAAGAAGCAGTGCCCTCCACCGCCCCTTTCACCGCCACCACCGT
TGGCAAGAAGCTATTCCTTTGCTTTGAAACTAAACCCTTTGTTGTTACAT
TGCTTGCTCTTACTTTAGTTATGCTTCTCTGGAACTTCCCTCCTTACTAT
CAAAACCTCTCTACTACCCGTCCCTGTTCAGCTGCTCCTCTCGCCTCAGT
AGTCGCTGCCGCCTCCACTAGCTTATTCTCCACCAATGCATCACTCCCTT
ATACAGCCACCCCCGCAGGTGAAAAGAAGTACTACTCGGATCCTAAAGTT
AAACCCAGGGACCCCAACAAGCGGGTCTTCGAGGCTTACGGTAACGCTGC
TGCTTTGTTTGTGCAGATGGGTGCTTACAGGGGCGGTCCTACAACATTCG
CGGTGGTGGGATTGGCTTCCAAACCTATTCACGTTTTCGGCCGCCCCTGG
TACAAATGTGAATGGATCTCAAATAATGGGTCATCTTTCAGAGCCAAGGC
CTACAAAATGCTTCCGGATTGGGGGTATGGGCGTGTTTACACCGTGGTGG
TGGTGAATTGCACTTTCCCAGTCAACCCAAACCAAGACAACCTTGGTGGT
AAGCTGATGATCAATGCCTACTACGGTGAGTCCCCAAGGAAGTACGAGAG
GTTCACAGCGTTGGAGGAGACCCCTGGATCTTACAATGCCGCCAAGTACC
GGCCACCATTTCAGTACGAATATTTGTACTGTGGGTCGTCTCTGTACGGG
AACCTCAGCGCTGACAGGATGAGAGAATGGATGGCTTACCACGCCTGGTT
CTTTGGGGCAAGCTCGCATTTCGTGTTTCATGATGCGGGCGGGGTCTCCC
CGGAGGTCAGAGCGGCTCTCGAACCTTGGGTGCGTGCCGGAAGGGCTACG
ATTCAAGACATTCGGGACCAAGAGCAGTTCGATGGGTATTATTATAACCA
GTTTTTGGTGGTGAATGATTGTTTGCATCGCTATCGACACGCTGCCAATT
GGACTTTCTACTTTGATGTGGACGAGTATATCTATTTACCTGATGGAAAC
ACTTTGGAGTCGGTGTTAAATGAATTCTCCGCTTATACACAGTTTACTAT
TGAGCAGAATCCAATGTCCAGCCTGCTCTGCCTAAATGATTCCTCTCAAC
AATATTCCAGGCAATGGGGATTCGAGAAGCTTCTGTTTAGAGAATCAAGA
ACGGGAATTCGGCGTGACAGGAAATATGCAATTCAGGCGAAGAATGCATT
CGCAACGGGAGTGCATATGTCGGAGAATGTTATTGGGAAAACATTACATA
AAACAGAAACAAAGATTCGTTATTATCACTATCACAACACCATTACCGTA
CACCAAGAGCTATGCAGAGAGTACCTCCCTCCCTCTGCCAAAAACAATGT
CACTTGGTTCAATAAGCTACCCTATGTCTACGATGATAACATGAAGAAAC
TGGCCAACACCATCAAGGAATTCGAGCATAAAACCATTGGAGACCTCGGT
TCTCTATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008166Glyco_transf_92