Ghi_A11G18896

Transcript Overview
NameGhi_A11G18896
Unique NameGhi_A11G18896_WHU-TM1_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length489
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:127497924..127498533 +Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v12020-04-04
InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins2020-04-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
gdtwL0293Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0294Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL2357Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL2257Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hwtwL0312Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gautwL0263Gossypium australe (G2) genome CRI_v1.1Gossypium australe
fntwL0303Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL0296Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dttwL0244Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
bhtwL0419Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL2368Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
abtwL3301Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
awtwL0309Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL0296Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL0277Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL0305Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL0286Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
grbtwL0284Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghttwL2229Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
hgstwL0291Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gktwL1665Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghtwL2316Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL2244Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hgstwL2356Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hjtwL0291Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbtwL4253Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hjtwL2240Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rbtwL0404Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rjtwL1417Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
twtwR0354Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
twtwR0428Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hntwL0280Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL0298Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL2371Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL2328Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL2394Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztwL0287Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL2241Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
twuhR0224Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR0310Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dfitwL0115Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dritwL1107Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dqitwL0140Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ndmtwL0304Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL2327Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwL0267Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2133Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtwL0269Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2132Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
jmbtwL0312Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL2275Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
psctwL0270Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2132Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytwL0294Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL2201Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftwL0295Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL2238Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
rna-gnl|WGS_VKGI|Godar.D11G374400.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS_VKGI|Godar.A11G362200.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
D5.v1.pred_00004987-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
GB_A11G3533Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:JABEZZ|Gorai_00007479-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
GB_D11G3509Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:JABFAA|Goari_00008369-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
Ghe11G41420Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
TURN.01g332720.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Gothu.00020645-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
rna-gnl|WGS:JABEZX|Golob_00008320-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Gbar_D11G033330.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
mikado.F11G10170.1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gene-EPI10_022674-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
Kirkii_Juiced.00g323870.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gene-E1A91_D11G363200v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gbscaffold5044.18.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
Gar11G40510Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Gbar_A11G032550.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Gorai.007G348500.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rna-gnl|WGS:VKDL|Gobar.D11G353800.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rna-gnl|WGS_VKGE|Gotom.D11G379300.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS_VKGE|Gotom.A11G363800.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Cotton_D_gene_10027425Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rna-gnl|WGS:VKDL|Gobar.A11G331500.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Cotton_A_19144Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GH_A11G03617_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
D11G36720.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gohir.A11G303200.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gohir.A11G303200.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GH_A11G3456Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Ghi_D11G17166Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
Ghi_D03G03241Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
Gohir.D11G318500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gohir.D11G318500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GH_D11G03617_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gh_A11G2702Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GhM_A11G3826.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_D11G3059Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
maker-Dt_11_GB713-augustus-gene-70.454-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gh_A11G347900.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghir_A11G033070.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
maker-Dt_11-aug-g-5.616-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
maker-At_11-aug-g-4.505-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Ghicr24_A11G350100.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gh_D11G351900.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
A11G37010.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
mk-Dt_11-augustus-gene-5.616-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GhM_D11G3743.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
CotAD_35935Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Ghicr24_D11G335100.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
GH_D11G3465Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GhirPA1101T323900.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
GhirPD1101T320900.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
genemark-At_11_GB713-gene-4.43-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Ghir_D11G033690.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
mk-At_11-augustus-gene-4.505-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghi_A11G18896.geneGhi_A11G18896.gene_WHU-TM1_v1Gossypium hirsutumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A11G18896.CDS1Ghi_A11G18896.CDS1_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_A11G18896.CDS2Ghi_A11G18896.CDS2_WHU-TM1_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A11G18896Ghi_A11G18896_WHU-TM1_v1-proteinGossypium hirsutumpolypeptide
Ghi_A11G18896_WHU-TM1_v1Ghi_A11G18896_WHU-TM1_v1Gossypium hirsutumpolypeptide


InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023393START-like domain superfamilyGENE3D3.30.530.20coord: 1..155
e-value: 3.5E-37
score: 129.6
IPR000916Bet v I/Major latex proteinPFAMPF00407Bet_v_1coord: 28..150
e-value: 1.3E-8
score: 34.9
NoneNo IPR availablePANTHERPTHR31213:SF90coord: 1..158
NoneNo IPR availablePANTHERPTHR31213FAMILY NOT NAMEDcoord: 1..158
NoneNo IPR availableCDDcd07816Bet_v1-likecoord: 3..126
e-value: 6.43786E-28
score: 99.186
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 3..153

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghi_A11G18896_WHU-TM1_v1 ID=Ghi_A11G18896_WHU-TM1_v1; Name=Ghi_A11G18896; organism=Gossypium hirsutum; type=mRNA; length=489bp
ATGAAGGGCCATCTCTCACATGATTATCATTTGGAGGTTCCGGCACCCGT
CGTATGGGACACCTACCGTGGCCTCGAGCTCGGAAAACTGGTCAATCAAA
TGTTTCAAGATGCTGTGGGAACGGTCGAAGTTGTTCAAGGTGACGGAGGC
GTCGGAACTATTTTAAAGATCACATTCCCTCCTGGACCACTGGGATTGAG
CTATATGAAGGAAATATTTATACAAGCCGATGATGAACAACGGGTGAAGG
AAAGTGAAGTCATTGAAGGAGGATTCAAAGATGTTGGATTTGATGTTTAT
CGTTATCGCTTTCATATCATCGAGAAAAATGGTGAATCATCTATTATCAG
GTCATCGGTGGAGTATGAAATAGATGACAAGCTTCAAGAGATTGCTTCCC
AAGCCACTACCAAGCAAATGGAAGCATTGAATGAAGTTGTTGGGAAATAT
CTCAAACAAAAATGGGATTCCTCTAATAAGAAACCTTAA
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protein sequence of Ghi_A11G18896_WHU-TM1_v1

>Ghi_A11G18896_WHU-TM1_v1 ID=Ghi_A11G18896_WHU-TM1_v1; Name=Ghi_A11G18896_WHU-TM1_v1; organism=Gossypium hirsutum; type=polypeptide; length=163bp
MKGHLSHDYHLEVPAPVVWDTYRGLELGKLVNQMFQDAVGTVEVVQGDGG
VGTILKITFPPGPLGLSYMKEIFIQADDEQRVKESEVIEGGFKDVGFDVY
RYRFHIIEKNGESSIIRSSVEYEIDDKLQEIASQATTKQMEALNEVVGKY
LKQKWDSSNKKP*
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mRNA from alignment at A11:127497924..127498533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghi_A11G18896_WHU-TM1_v1 ID=Ghi_A11G18896_WHU-TM1_v1; Name=Ghi_A11G18896; organism=Gossypium hirsutum; type=mRNA; length=610bp; location=Sequence derived from: A11:127497924..127498533+ (Gossypium hirsutum
ATGAAGGGCCATCTCTCACATGATTATCATTTGGAGGTTCCGGCACCCGT
CGTATGGGACACCTACCGTGGCCTCGAGCTCGGAAAACTGGTCAATCAAA
TGTTTCAAGATGCTGTGGGAACGGTCGAAGTTGTTCAAGGTGACGGAGGC
GTCGGAACTATTTTAAAGATCACATTCCCTCCTGGTAAGTATGATGTACA
TATGTTGTAGGGTTCGAACAGATAATTCGACCTTTTAATAAGTCTTTTAA
GTGTGGGGATTTTTTTATTTTTTATTTTATAATCGTGGCATTGAAATTGA
TATAGGACCACTGGGATTGAGCTATATGAAGGAAATATTTATACAAGCCG
ATGATGAACAACGGGTGAAGGAAAGTGAAGTCATTGAAGGAGGATTCAAA
GATGTTGGATTTGATGTTTATCGTTATCGCTTTCATATCATCGAGAAAAA
TGGTGAATCATCTATTATCAGGTCATCGGTGGAGTATGAAATAGATGACA
AGCTTCAAGAGATTGCTTCCCAAGCCACTACCAAGCAAATGGAAGCATTG
AATGAAGTTGTTGGGAAATATCTCAAACAAAAATGGGATTCCTCTAATAA
GAAACCTTAA
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Coding sequence (CDS) from alignment at A11:127497924..127498533+

>Ghi_A11G18896_WHU-TM1_v1 ID=Ghi_A11G18896_WHU-TM1_v1; Name=Ghi_A11G18896; organism=Gossypium hirsutum; type=CDS; length=489bp; location=Sequence derived from: A11:127497924..127498533+ (Gossypium hirsutum
ATGAAGGGCCATCTCTCACATGATTATCATTTGGAGGTTCCGGCACCCGT
CGTATGGGACACCTACCGTGGCCTCGAGCTCGGAAAACTGGTCAATCAAA
TGTTTCAAGATGCTGTGGGAACGGTCGAAGTTGTTCAAGGTGACGGAGGC
GTCGGAACTATTTTAAAGATCACATTCCCTCCTGGACCACTGGGATTGAG
CTATATGAAGGAAATATTTATACAAGCCGATGATGAACAACGGGTGAAGG
AAAGTGAAGTCATTGAAGGAGGATTCAAAGATGTTGGATTTGATGTTTAT
CGTTATCGCTTTCATATCATCGAGAAAAATGGTGAATCATCTATTATCAG
GTCATCGGTGGAGTATGAAATAGATGACAAGCTTCAAGAGATTGCTTCCC
AAGCCACTACCAAGCAAATGGAAGCATTGAATGAAGTTGTTGGGAAATAT
CTCAAACAAAAATGGGATTCCTCTAATAAGAAACCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom_sf
IPR000916Bet_v_I/MLP
Vocabulary: Biological Process
TermDefinition
GO:0006952defense response