Ghi_A06G06391

Transcript Overview
NameGhi_A06G06391
Unique NameGhi_A06G06391_WHU-TM1_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length300
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:48914971..48915270 -Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v12020-04-04
InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins2020-04-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
gdtwL0793Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0769Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL1468Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL1415Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL1596Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL1538Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bztwL1760Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL2853Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL2721Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3272Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3119Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3413Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3276Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hwtwL0821Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1381Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1520Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1633Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
fntwL0789Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dttwL0520Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gbtwL0811Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
fntwL1325Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fntwL1465Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fntwL1591Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL1620Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL2749Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhtwL2760Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL2850Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL5207Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhtwL5396Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL3437Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
abtwL1272Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abtwL3534Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
awtwL0784Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL0763Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
awtwL1345Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awtwL1483Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awtwL1593Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL1400Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghttwL1516Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghttwL1733Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL0779Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gktwL0830Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gktwL1028Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghztwL0772Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gtbtwL0780Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gktwL1152Gossypioides kirkii genome ISU_v3Gossypioides kirkii
grbtwL0764Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghttwL2689Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL1591Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL1323Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL1417Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghttwL3072Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL1811Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL1479Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL1535Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
grbtwL1279Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
hgstwL0802Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghttwL3225Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gtbtwL1582Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
grbtwL1398Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghztwL1750Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
grbtwL1515Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
hgstwL1478Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgstwL1608Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghtwL2813Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL2718Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hbtwL0109Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
ghtwL3229Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
hbtwL0258Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
ghtwL3406Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL3118Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghztwL3276Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hbtwL1204Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hgstwL2853Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL0995Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hgstwL3267Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgstwL3413Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL1675Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
actwL1831Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
actwL1971Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbtwL3786Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hjtwL1389Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL1507Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL2703Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rjtwL0115Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rjtwL0266Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hjtwL3123Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL3264Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rbtwL1443Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rbtwL1585Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rjtwL2020Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
adtwL0831Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
totwL0822Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL1510Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adtwL1638Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL1439Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hntwL1571Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL1520Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
totwL1645Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntwL1794Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adtwL2880Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adtwL3301Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL2801Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adtwL3455Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
totwL2880Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntwL3562Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL3340Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
totwL3493Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztwL0764Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1409Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1526Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1741Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL2699Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3102Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3264Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
twuhR2539Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2555Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2598Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR2609Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtttwL0073Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtttwL1161Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtotwL1105Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dfitwL0521Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfitwL0736Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfitwL0744Gossypium aridum (D4) genome ISU_v1Gossypium aridum
gtitwL0642Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dritwL0181Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dritwL1527Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dqitwL0661Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL0775Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ndmtwL0788Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL1454Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL1580Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL2799Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3211Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3377Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwL0730Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL1344Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL1479Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2956Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL3106Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtwL0728Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1322Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1459Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2953Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL3103Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
jmbtwL0778Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL1431Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL1549Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL2738Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3130Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3291Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
psctwL0734Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1338Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1474Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2943Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL3098Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytwL0751Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1385Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1500Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1710Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL3058Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL3214Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftwL0778Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL1415Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL1531Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3102Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3246Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3354Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
gene-E1A91_D06G127300v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gar05G06720Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Gothu.00026028-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
GB_A05G0669Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Gbscaffold9036.8.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gene-E1A91_A06G115500v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS:JABFAA|Goari_00030720-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
rna-gnl|WGS_VKGE|Gotom.D06G136900.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS:JABFAE|Goarm_00028894-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
Gbar_D06G011770.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Cotton_A_31682Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
TURN.06g163510.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Gorai.009G068900.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Ghe05G07100Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS:JABFAD|Gohar_00029587-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
TURN.05g142310.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
rna-gnl|WGS:JABFAA|Goari_00000783-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
rna-gnl|WGS:VKDL|Gobar.D06G125600.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
GB_A06G1350Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
GB_D06G1237Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:VKDL|Gobar.A06G115200.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rna-gnl|WGS_VKGI|Godar.A06G129100.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Cotton_A_01111Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
EVM_prediction_Ga05G0696Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
EVM_prediction_Ga06G1251Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
rna-gnl|WGS_VKGI|Godar.D05G071200.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:VKDL|Gobar.D05G066800.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gorai.010G123400.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rna-gnl|WGS_VKGE|Gotom.D05G072600.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS:VKDL|Gobar.A05G067400.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
GB_D05G0663Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Cotton_D_gene_10000980Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rna-gnl|WGS:JABEZX|Golob_00033738-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Kirkii_Juiced.00g088580.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
Ghe06G13920Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gene-E1A91_A05G068900v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Kirkii_Juiced.00g138400.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS_VKGI|Godar.D06G134500.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gbar_A06G011320.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
rna-gnl|WGS:JABEZX|Golob_00000805-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
rna-gnl|WGS_VKGI|Godar.A05G069400.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS_VKGE|Gotom.A05G071100.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gar06G13950Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Cotton_D_gene_10039615Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
gene-E1A91_D05G071100v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Golon.005G069000-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
rna-gnl|WGS_VKGE|Gotom.A06G126700.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS:JABEZZ|Gorai_00000756-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
D5.v1.pred_00000746-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
rna-gnl|WGS:JABEZZ|Gorai_00029267-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
GhirPD0501T066000.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
D05G06850.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
A05G07720.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gohir.A06G106500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GhM_A05G0713.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
augustus_masked-Dt_05_GB713-gene-5.522-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
D06G12830.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Ghir_D06G011780.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
GH_A06G01212_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gohir.D05G068100.2Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
A06G15150.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Ghicr24_A05G069600.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
CotAD_58131Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
aug_m-Dt_05-proG-10.2612-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Gh_D06G1140Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
aug_m-At_05-proG-11.2246-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Gh_D06G120100.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GH_D06G01257_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gh_D05G068200.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GhM_A06G1493.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_A05G051700.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GhM_D05G0735.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gohir.D06G108700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GH_D05G00601_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GhirPA0501T360600.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Gohir.A05G065500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GH_A06G1306Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gohir.A05G065500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GhM_D06G1333.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_A06G0964Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GH_D05G0665Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gohir.D05G068100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GH_D06G1188Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Ghir_A05G006760.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
GH_A05G0665Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GH_A05G00569_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gh_A06G135800.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
aug_masked-Dt_05-g-10.2612-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Ghicr24_D06G119600.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gohir.A06G106500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
CotAD_00026Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
augustus_masked-At_05_GB713-gene-6.90-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
CotAD_48887Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Gohir.D06G108700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Ghicr24_A06G135600.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
aug_masked-At_05-g-11.2246-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Ghir_A06G012590.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gh_D05G0668Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghicr24_D05G065100.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghi_A06G06391.geneGhi_A06G06391.gene_WHU-TM1_v1Gossypium hirsutumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A06G06391.CDS1Ghi_A06G06391.CDS1_WHU-TM1_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghi_A06G06391Ghi_A06G06391_WHU-TM1_v1-proteinGossypium hirsutumpolypeptide
Ghi_A06G06391_WHU-TM1_v1Ghi_A06G06391_WHU-TM1_v1Gossypium hirsutumpolypeptide


InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33433:SF15FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1coord: 1..99
IPR039274Flowering-promoting factor 1PANTHERPTHR33433FAMILY NOT NAMEDcoord: 1..99

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghi_A06G06391_WHU-TM1_v1 ID=Ghi_A06G06391_WHU-TM1_v1; Name=Ghi_A06G06391; organism=Gossypium hirsutum; type=mRNA; length=300bp
ATGTCAGGAGTGTGGGTGTTTAACAATGGTGTATACCGGTTGGAAAGCAG
TCCGAAGAGAAGGGTGTTGGTACACTTACCATCAGGTGAGGCAGTATCAT
CCTACTCATCTCTTGAGAATATATTGAGAGGATTGGGGTGGGAGAGGTAC
TACGGGGGTGACCCTGACTTCTATCAATACCACAAGCACTCTTCCATTGA
CCTCATTTCACTTCCTAAGGACTTTTCCAAGTTCGGCTCCGTTCACATGT
ATGACATTGTCGTTAAGAATCCCAATGTCTTCCACGTACGGGATATGTAA
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protein sequence of Ghi_A06G06391_WHU-TM1_v1

>Ghi_A06G06391_WHU-TM1_v1 ID=Ghi_A06G06391_WHU-TM1_v1; Name=Ghi_A06G06391_WHU-TM1_v1; organism=Gossypium hirsutum; type=polypeptide; length=100bp
MSGVWVFNNGVYRLESSPKRRVLVHLPSGEAVSSYSSLENILRGLGWERY
YGGDPDFYQYHKHSSIDLISLPKDFSKFGSVHMYDIVVKNPNVFHVRDM*
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mRNA from alignment at A06:48914971..48915270-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghi_A06G06391_WHU-TM1_v1 ID=Ghi_A06G06391_WHU-TM1_v1; Name=Ghi_A06G06391; organism=Gossypium hirsutum; type=mRNA; length=300bp; location=Sequence derived from: A06:48914971..48915270- (Gossypium hirsutum
ATGTCAGGAGTGTGGGTGTTTAACAATGGTGTATACCGGTTGGAAAGCAG
TCCGAAGAGAAGGGTGTTGGTACACTTACCATCAGGTGAGGCAGTATCAT
CCTACTCATCTCTTGAGAATATATTGAGAGGATTGGGGTGGGAGAGGTAC
TACGGGGGTGACCCTGACTTCTATCAATACCACAAGCACTCTTCCATTGA
CCTCATTTCACTTCCTAAGGACTTTTCCAAGTTCGGCTCCGTTCACATGT
ATGACATTGTCGTTAAGAATCCCAATGTCTTCCACGTACGGGATATGTAA
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Coding sequence (CDS) from alignment at A06:48914971..48915270-

>Ghi_A06G06391_WHU-TM1_v1 ID=Ghi_A06G06391_WHU-TM1_v1; Name=Ghi_A06G06391; organism=Gossypium hirsutum; type=CDS; length=300bp; location=Sequence derived from: A06:48914971..48915270- (Gossypium hirsutum
ATGTCAGGAGTGTGGGTGTTTAACAATGGTGTATACCGGTTGGAAAGCAG
TCCGAAGAGAAGGGTGTTGGTACACTTACCATCAGGTGAGGCAGTATCAT
CCTACTCATCTCTTGAGAATATATTGAGAGGATTGGGGTGGGAGAGGTAC
TACGGGGGTGACCCTGACTTCTATCAATACCACAAGCACTCTTCCATTGA
CCTCATTTCACTTCCTAAGGACTTTTCCAAGTTCGGCTCCGTTCACATGT
ATGACATTGTCGTTAAGAATCCCAATGTCTTCCACGTACGGGATATGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR039274FPF1
Vocabulary: Biological Process
TermDefinition
GO:0009909regulation of flower development