Ghi_D02G01106

Transcript Overview
NameGhi_D02G01106
Unique NameGhi_D02G01106_WHU-TM1_v1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length597
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:3569010..3571979 -Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v12020-04-04
InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins2020-04-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
gdtwL0155Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0160Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL0994Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL0972Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL1647Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL1589Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL2087Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL2014Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL2215Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL2136Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gdtwL3761Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
bztwL3632Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
hwtwL0165Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1002Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtwL1892Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gautwL0143Gossypium australe (G2) genome CRI_v1.1Gossypium australe
fntwL0162Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL0152Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dttwL0132Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gautwL0943Gossypium australe (G2) genome CRI_v1.1Gossypium australe
bhtwL0223Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
fntwL0963Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL1014Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gautwL1565Gossypium australe (G2) genome CRI_v1.1Gossypium australe
dttwL1229Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dttwL1353Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
fntwL1857Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gbtwL1671Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL2491Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhtwL2495Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL2107Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL3297Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL2230Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bhtwL3533Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gbtwL3815Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
abtwL1603Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
awtwL0169Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL0156Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
awtwL0958Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL0960Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
awtwL1850Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
ghttwL1566Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL0145Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL0167Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghztwL0147Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghttwL1984Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gktwL0587Gossypioides kirkii genome ISU_v3Gossypioides kirkii
grbtwL0162Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghttwL2106Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtwL0995Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL0972Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gtbtwL0958Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
hgstwL0152Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gktwL1397Gossypioides kirkii genome ISU_v3Gossypioides kirkii
grbtwL0936Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gktwL1523Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghtwL1644Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghztwL1585Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghtwL2057Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
hgstwL0990Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
ghtwL2179Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gtbtwL1844Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghttwL3582Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghztwL1988Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
grbtwL1770Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghztwL2110Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hgstwL1663Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgstwL2092Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgstwL2221Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbtwL0595Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
actwL0250Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
ghtwL3744Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
hbtwL1281Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hjtwL0149Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghztwL3612Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
actwL1205Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbtwL2833Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hjtwL0951Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hgstwL3766Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actwL2257Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hjtwL1556Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL1979Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjtwL2106Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rbtwL0196Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hjtwL2771Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rjtwL0322Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rbtwL1358Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hjtwL3648Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rjtwL1170Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rjtwL1295Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
twtwL0169Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwL2957Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
adtwL0153Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL0133Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL0155Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL1035Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL0984Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL1027Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL1689Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adtwL2106Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL1629Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adtwL2240Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
totwL1700Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntwL2062Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hntwL2191Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL2132Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
totwL2263Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtwL3829Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hntwL3952Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
totwL3854Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztwL0151Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL0969Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1577Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL1989Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL2113Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztwL3627Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
twuhR0737Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR0763Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR0782Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR0794Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
twuhR0833Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gtitwL0272Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gtitwL1295Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dritwL0220Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dritwL0891Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dritwL0998Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dqitwL0032Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL0931Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqitwL1457Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
ndmtwL0162Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL0995Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL1632Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL2068Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL2191Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtwL3752Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
bartwL0141Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL0908Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL1514Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL1906Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL2025Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartwL3448Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtwL0146Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL0905Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1498Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL1891Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL2014Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtwL3449Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
jmbtwL0156Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL0977Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL1597Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL2024Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL2148Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtwL3655Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
psctwL0141Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL0910Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1509Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL1895Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL2016Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctwL3445Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytwL0165Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL0945Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1547Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL1961Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL2079Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytwL3574Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftwL0156Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL0963Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL1582Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL1990Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL2110Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftwL3606Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
EVM_prediction_Ga03G0284Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
gene-EPI10_020834-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
Gbar_A10G013650.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Gbar_A02G002240.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
rna-gnl|WGS:VKDL|Gobar.A10G135200.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gar10G16950Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Kirkii_Juiced.00g269510.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS:VKDL|Gobar.A02G026700.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
D5.v1.pred_00013699-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
GB_D02G0281Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
GB_A10G1429Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
EVM_prediction_Ga10G1497Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Gothu.00014580-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
rna-gnl|WGS:VKDL|Gobar.D02G032400.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Cotton_D_gene_10014312Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
gene-EPI10_007617-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
Ghe03G28020Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS_VKGE|Gotom.A02G027700.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS_VKGI|Godar.A02G028400.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gene-E1A91_D10G159600v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Ghe10G11350Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS_VKGI|Godar.A10G149600.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS_VKGI|Godar.D02G036000.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gbar_D02G002910.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
GB_A02G0248Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Golon.003G028300-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
rna-gnl|WGS_VKGE|Gotom.D10G169100.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gorai.011G156800.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rna-gnl|WGS:JABEZZ|Gorai_00021077-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
rna-gnl|WGS:JABEZX|Golob_00024145-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Gbar_D10G014650.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
EVM0005036.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
D5.v1.pred_00027364-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Gar03G26820Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
gene-E1A91_A10G139300v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
gene-E1A91_D02G036100v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gorai.005G032500.2Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Cotton_D_gene_10011263Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
rna-gnl|WGS:VKDL|Gobar.D10G155500.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
GB_D10G1516Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Golon.010G161000-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
TURN.00g278930.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Kirkii_Juiced.00g055630.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS_VKGI|Godar.D10G165500.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gohir.D10G141000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Ghi_A02G00426-R6734699.mRNAGossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Gh_A10G120400.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghicr24_D10G149000.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
GhirPA1001T126900.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Gh_D02G032400.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GH_D10G1533Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GH_D02G00352_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GH_D02G0271Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
CotAD_46572Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Ghir_D10G014990.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
genemark-Dt_02-proG-4.1400-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
genemark-At_02-g-2.235-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
GhM_A02G0259.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gohir.D02G028100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Ghicr24_D02G029500.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
genemark-At_02_GB713-gene-105.227-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
GhirPD1001T107700.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Ghicr24_A02G026700.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
maker-At_10_GB713-augustus-gene-70.34-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Ghi_A10G07801Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
GH_A02G0246Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GhM_D10G1581.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_D10G152600.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
A02G02740.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GH_A10G1359Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
genemark-At_02-proG-2.235-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Gohir.A02G021600.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
genemark-Dt_02-g-4.1400-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Gohir.A10G125600.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
maker-Dt_10_GB713-augustus-gene-28.8-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gh_D10G1394Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gh_A10G1112Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
D02G03240.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gh_D02G0284Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghir_D02G002820.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gh_A02G027400.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
A10G15050.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Ghi_D02G01106-R8547991.mRNAGossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
GH_A02G00213_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gh_A02G0218Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GH_D10G01577_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Gohir.D10G141000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gohir.D02G028100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gohir.A10G125600.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GH_A10G01393_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GhM_D02G0289.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
GhM_A10G1535.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Ghir_A02G002430.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
CotAD_25983Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
maker-Dt_02_GB713-augustus-gene-69.345-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Gohir.A02G021600.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghi_D02G01106.geneGhi_D02G01106.gene_WHU-TM1_v1Gossypium hirsutumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghi_D02G01106.CDS1Ghi_D02G01106.CDS1_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D02G01106.CDS2Ghi_D02G01106.CDS2_WHU-TM1_v1Gossypium hirsutumCDS
Ghi_D02G01106.CDS3Ghi_D02G01106.CDS3_WHU-TM1_v1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghi_D02G01106Ghi_D02G01106_WHU-TM1_v1-proteinGossypium hirsutumpolypeptide
Ghi_D02G01106_WHU-TM1_v1Ghi_D02G01106_WHU-TM1_v1Gossypium hirsutumpolypeptide


InterPro
Analysis Name: InterProScan Analysis for WHU_v1_a1 Gossypium hirsutum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012946X8 domainPFAMPF07983X8coord: 27..98
e-value: 4.8E-22
score: 78.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..151
NoneNo IPR availablePANTHERPTHR31044:SF47CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEINcoord: 11..186
NoneNo IPR availablePANTHERPTHR31044FAMILY NOT NAMEDcoord: 11..186

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghi_D02G01106_WHU-TM1_v1 ID=Ghi_D02G01106_WHU-TM1_v1; Name=Ghi_D02G01106; organism=Gossypium hirsutum; type=mRNA; length=597bp
ATGGCAATACCAGTCTTAAAGCTAGTATTGTTGTTCCTCCCATTGCTAAT
AAACGTCTTCTCGTTTGTTCAAGGCCAAACCTGGTGTGTGGCTCGAAGTG
ATGCCAGTAGCCAAGCTCTACAAAATGCACTAGACTACGCATGTGCCTCT
GGTGCTGACTGCACCCCTATACAATCAAATGGCCTTTGTTTCCTTCCAAA
TACAATCCAAGCTCATGCTTCCTATGCTTACAATAGCTACTATCAACGAA
GGGCAAAGGCACCTGGTTCTTGTGACTTTGCTGGCACTGCCACTGTTGCT
AAAACTGATCCCAGTTATGGATCTTGTATGTACCCATCTCCTCAAAGCAC
ATCCGGAGGGACAGCTATGCCAAAAACAGGGTCGTGGAACAATCCGAATG
TGCCAACTACGACAACCACACCGATCAATGGCGGAGGTGGCGGTCCGGGG
CTCAATTACCCTGGATTCAGCCCTCCATTTCTCTCTAGAGCTTCATTTGA
TAGTACACTCAACACAAGCTCAATGTCTATCCTGCTCTTACTTGTTCTAT
CATTTATTTTGCATCCAATATGGAACTTTTTAAACCTTGATGCATGA
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protein sequence of Ghi_D02G01106_WHU-TM1_v1

>Ghi_D02G01106_WHU-TM1_v1 ID=Ghi_D02G01106_WHU-TM1_v1; Name=Ghi_D02G01106_WHU-TM1_v1; organism=Gossypium hirsutum; type=polypeptide; length=199bp
MAIPVLKLVLLFLPLLINVFSFVQGQTWCVARSDASSQALQNALDYACAS
GADCTPIQSNGLCFLPNTIQAHASYAYNSYYQRRAKAPGSCDFAGTATVA
KTDPSYGSCMYPSPQSTSGGTAMPKTGSWNNPNVPTTTTTPINGGGGGPG
LNYPGFSPPFLSRASFDSTLNTSSMSILLLLVLSFILHPIWNFLNLDA*
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mRNA from alignment at D02:3569010..3571979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghi_D02G01106_WHU-TM1_v1 ID=Ghi_D02G01106_WHU-TM1_v1; Name=Ghi_D02G01106; organism=Gossypium hirsutum; type=mRNA; length=2970bp; location=Sequence derived from: D02:3569010..3571979- (Gossypium hirsutum
ATGGCAATACCAGTCTTAAAGCTAGTATTGTTGTTCCTCCCATTGCTAAT
AAACGTCTTCTCGTTTGTTCAAGGCCAAACCTGGTGTGTGGCTCGAAGTG
ATGCCAGTAGCCAAGCTCTACAAAATGCACTAGACTACGCATGTGCCTCT
GGTGCTGACTGCACCCCTATACAATCAAATGGCCTTTGTTTCCTTCCAAA
TACAATCCAAGCTCATGCTTCCTATGCTTACAATAGCTACTATCAACGAA
GGGCAAAGGCACCTGGTTCTTGTGACTTTGCTGGCACTGCCACTGTTGCT
AAAACTGATCCCAGTTTTGTTCTTTAAAACCCTTCAATTGTGTTTCTGTC
TTCTTCTTTTTGTCATTTTTGAGTGGTTTTTAGAACTGGGTTTTTGATTA
TTTTGTTGCTCTGTTTTGCAGGTTATGGATCTTGTATGTACCCATCTCCT
CAAAGGTACGCTGTATGCATGTTTTTTTTTTCTTGAATTATTTTTTTAAA
AAAGGAATTATCTTTAAATATTTTATATGCAAAAATGAACTTGGGGGTTC
CACTATTTTGAACATTAGTACATTTCCTCCTTTTTCTTTTTTTCCTTTTC
TTTAATCGGTGTAGCTTTAGAAAGAATTTGGTCTAATTTCTTGAGTTTCA
CGCATTCCTTTGATAGTAAATGGTAGCTGAGATTTACATTGGTTTAATAA
TGCTCTTAGTACTTATACTTTTTTTCACTTTTGAAATTTAGTCTATTACT
TTTTGTTAAGAATTTAGTTTCTCTTTACTCTTTTAATTTAATAATTGAAA
TTTAGTTGTTAGCACAGTGAAAAAACCAATATAAGAAAATAAAGGATTAA
ATTTCTAGAATTAAAAGTAGAGGTATTTCATGATTATATTGATTTAAATT
ATTGTATTAAATATATCATCTTTATGAATGGATGTTAAATTTATACTAGC
GAATTTTGTAGATTAAGTGTGTTTGGACGAGAGTACTACTATGAAAATGA
CTTCTTAAGAAGCTCAATATTGGCGGATTTAGGGGGGTTGGCAGAGCCCG
ACCCCCCTAAAATGTTCTATTTTGGCCCTTTAAAGTTTTAAAATTTTTAA
ATTAGTAAATATAAAATTACATTTTGATTCATTTAAAAATAATAAAAAAT
TAATTTAATCCTTTAAAATTTATAAATATATAGATAATTTAATTTCGGCC
CCTCTAAATTTTTTTCTTGGTTTCACCCCTGAAGAAATTTTTATGTTGCA
CCCAATTTATGTTCAATGTTTATTGGGTCAAGTGAGAAGAAGTTCGATAT
TCCTTAAATGAAATTTTGAGTTCGATTCTTATGAATATAGAAAATTATGT
TCAAAGAAATTACACCTTGAAAAAGAGTATAACCTTACTCGATTTTAGAT
TTAATTGAAAGGTAAACTACATTCAAGATTACTAAACTATTAGTAAGATT
ATATTTTGGTCACTCAACTTCAAAAAAAATTATAAAATGGTCATTGAACT
ACTCGAAAGTTTTCATTTAAGTCATCGGGTTGTTAAAATTACTGTTGTAT
GGCTTTCTTTGTCTGCATTGCTTGCAACACTCAAAAGCTTTAATTTCCCT
TCTCTTTTACAGTTTAATTTTTTTTTATGAAATAACTTTTAACGTCACAA
ATCTATAAACTAAAATCCAAACAGTTTTTCTCTTCATTCTCCGATCTCCG
ACACTAACCGTTAGATCAACTTGGATCTACTCGTCGGCGGGTATTTATCC
ACCATACCGATTGTTAAATTGTTGCTTGGAGTTCACTAGCTGAACCTCCT
TTTTAAAAAAAAAATTTAACAGCCCAGTAAATTAAATAAAAAATTTTAAA
TAGTTTAGTGACTTAAATAAAAAAATTTGAATAATTTATTACCCATTTAA
TAACTTTTTGAAGTTGGGTGTAATTTATTATTGAAACCCTTGTGGCTTGT
AAGAGGATCAAAGACAGAAAAACAAAAAGGCGCAAAATAAGATATTGTTT
AAATCCTAATTAACAAACATGAATCAACTTTGCATAATCCTTTGTTCCTC
AAGGGGGTGTGAGCCTTTCATGGTGATGTTGTAATTGAGTAGATGTCTGA
CACGTGTTTCTCGGCATGATCTCTAACCTTCCATTTTCGTATCCTACATG
CAGTCGTCACTTTGTGAAGGTTTACACCTTTTACGTTTCCCGGCTTATTT
ATGTCTGTTGGTCACTTCTTTGCTTGTAATGTTTTCCTACTGTCTTGTTT
AGGTGAGACTTTTTCAACCGTTGGATGGGTACTCTTCTCTTGAAAGACAT
CCAACGGTCAAAAAACACTCTAGATATTTGGATACCGGAGTTATACCTGG
GTAGTTCAAGATCAATTCGAGTTTAGATTTAGATGAAAATTCGATTTGTC
TGCCTTGATTTACTTACTAAAACATCATTTTTTTTTAATTTTATAATTAT
TTTTATATTTCTAAATAAAATCGAGCTCAGAACAAATCGAAGCAGAGGAT
ATAAAAATCGAGTCGAAATTGAGGCGAGCAAAAACTCGTCCCGTCTCACC
TTGTTGTCATCTCTATCCATGGGCGCATTGCTGGGCTCCAGCAAAAGCTA
ATAATAGCTCCTTTCGCCTATTTTTTGAAAATTACCAACCAAATTGGATT
CCATCATTATTTGTAGTTTTTGTCACTGTTATTTTATTGATTTTAAAAGC
TTAAGTTATGAAATTTCCAGCACATCCGGAGGGACAGCTATGCCAAAAAC
AGGGTCGTGGAACAATCCGAATGTGCCAACTACGACAACCACACCGATCA
ATGGCGGAGGTGGCGGTCCGGGGCTCAATTACCCTGGATTCAGCCCTCCA
TTTCTCTCTAGAGCTTCATTTGATAGTACACTCAACACAAGCTCAATGTC
TATCCTGCTCTTACTTGTTCTATCATTTATTTTGCATCCAATATGGAACT
TTTTAAACCTTGATGCATGA
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Coding sequence (CDS) from alignment at D02:3569010..3571979-

>Ghi_D02G01106_WHU-TM1_v1 ID=Ghi_D02G01106_WHU-TM1_v1; Name=Ghi_D02G01106; organism=Gossypium hirsutum; type=CDS; length=597bp; location=Sequence derived from: D02:3569010..3571979- (Gossypium hirsutum
ATGGCAATACCAGTCTTAAAGCTAGTATTGTTGTTCCTCCCATTGCTAAT
AAACGTCTTCTCGTTTGTTCAAGGCCAAACCTGGTGTGTGGCTCGAAGTG
ATGCCAGTAGCCAAGCTCTACAAAATGCACTAGACTACGCATGTGCCTCT
GGTGCTGACTGCACCCCTATACAATCAAATGGCCTTTGTTTCCTTCCAAA
TACAATCCAAGCTCATGCTTCCTATGCTTACAATAGCTACTATCAACGAA
GGGCAAAGGCACCTGGTTCTTGTGACTTTGCTGGCACTGCCACTGTTGCT
AAAACTGATCCCAGTTATGGATCTTGTATGTACCCATCTCCTCAAAGCAC
ATCCGGAGGGACAGCTATGCCAAAAACAGGGTCGTGGAACAATCCGAATG
TGCCAACTACGACAACCACACCGATCAATGGCGGAGGTGGCGGTCCGGGG
CTCAATTACCCTGGATTCAGCCCTCCATTTCTCTCTAGAGCTTCATTTGA
TAGTACACTCAACACAAGCTCAATGTCTATCCTGCTCTTACTTGTTCTAT
CATTTATTTTGCATCCAATATGGAACTTTTTAAACCTTGATGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012946X8