Ghe09G17220, Ghe09G17220_WHU-A1_v1 (mRNA) Gossypium herbaceum

Transcript Overview
NameGhe09G17220
Unique NameGhe09G17220_WHU-A1_v1
TypemRNA
OrganismGossypium herbaceum (Cotton (G. herbaceum))
Sequence length150
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:70417693..70418287 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
adhwL0106Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhwL0768Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhwL1059Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhwL1773Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhwL2485Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
achwL0145Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
adhwL3106Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
achwL0880Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
achwL1776Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
bhhwL1041Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bzhwL0114Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhwL0115Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
awhwL1562Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
bzhwL0756Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bhhwL2215Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhwL2900Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhwL4004Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bzhwL1776Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhwL3111Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
dthwL0167Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
fnhwL0109Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhwL0115Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dthwL0859Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dthwL0861Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
gbhwL0107Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
fnhwL0963Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gdhwL0108Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gbhwL0771Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhwL1057Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gdhwL0780Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fnhwL1599Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
gdhwL1068Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gbhwL1767Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
hnhwL0103Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gdhwL1786Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
ghhwL0102Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghthwL0108Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL0103Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
hnhwL0757Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhwL0746Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gdhwL2509Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
ghthwL0765Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghzhwL0736Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gbhwL3078Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gdhwL3128Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
hnhwL1801Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhwL1707Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghzhwL1706Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthwL1765Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
hnhwL3277Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
ghhwL2992Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
grbhwL0103Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gkhwL0105Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghzhwL3033Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gkhwL0445Gossypioides kirkii genome ISU_v3Gossypioides kirkii
ghthwL3092Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gkhwL1176Gossypioides kirkii genome ISU_v3Gossypioides kirkii
grbhwL1522Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gtbhwL0108Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhwL0110Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
hbhwL0167Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hwhwL114Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hgshwL0109Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gtbhwL0930Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
hbhwL1963Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hgshwL0781Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgshwL1072Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hjhwL0741Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
gtbhwL1603Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
hjhwL1023Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hgshwL1799Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hjhwL1743Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hgshwL2515Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hwhzR1860Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR1939Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hwhzR2002Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hjhwL2439Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjhwL2442Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hgshwL3142Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hjhwL3092Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hwrbR2040Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hwrbR2157Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hwrjR1196Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hwtoR1563Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hwtoR1587Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hwtoR1635Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hwtwR1857Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hwtwR1929Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hwtwR2002Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hwuhR1538Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hwuhR1593Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hwuhR1644Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtohwL0151Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtohwL0156Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtohwL0157Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtohwL0458Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
gtihwL0439Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gtihwL1143Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dsihwL246Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsihwL900Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsihwL907Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsihwL909Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
grohwL0119Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grohwL1656Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
goshwL0945Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
goshwL1613Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
grhhwL0112Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhhwL0114Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhhwL0959Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhhwL1612Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
ganhwL0110Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
ganhwL0112Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
ganhwL1494Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
gahhwL1549Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
hwndmR1881Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwndmR1882Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwndmR1915Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwndmR1965Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwndmR2032Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hwpimR1903Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR1904Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR1945Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR1980Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
hwpimR2048Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
d8ihwL0444Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d8ihwL0446Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
d8ihwL0745Gossypium trilobum (D8) genome ISU_v1Gossypium trilobum
gdihwL0445Gossypium davidsonii (D3d-27) genome ISU_v1Gossypium davidsonii
gdihwL0447Gossypium davidsonii (D3d-27) genome ISU_v1Gossypium davidsonii
gdihwL0752Gossypium davidsonii (D3d-27) genome ISU_v1Gossypium davidsonii
d3dhwL0691Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
d3dhwL0692Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
barhwL0104Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhwL0735Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhwL1728Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhwL2987Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbhwL0095Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhwL0724Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhwL0725Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhwL1700Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhwL2932Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
a3hhwL0751Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL1763Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhwL3136Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
b1jhwL0110Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
b1jhwL0111Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
b1jhwL1630Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aouhwL0096Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
aouhwL1392Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
gbihwL0123Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gbihwL0131Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gbihwL0877Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gbihwL1856Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gszhwL0440Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gszhwL1142Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gcfhwL0095Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
gcfhwL1466Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
gechwL0110Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechwL0769Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechwL0771Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechwL1784Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechwL3144Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
grzhwL0099Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
grzhwL0808Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
grzhwL1411Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
adshwL0106Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adshwL0742Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adshwL0744Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adshwL1742Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adshwL3065Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
hwjmbR1904Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR1905Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR1986Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hwjmbR2054Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
a1zhwL0097Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1zhwL0869Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1whwL0095Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
a1whwL1459Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
b1hhwL0122Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
b1hhwL0124Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
b1hhwL1637Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
c1hhwL0113Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
c1hhwL1065Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
c1hhwL1636Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
e1hhwL0973Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
e1hhwL1665Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
f1hhwL0120Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
f1hhwL1629Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
g1hhwL0124Gossypium bickii (G1) genome HAU_v1Gossypium bickii
g1hhwL1708Gossypium bickii (G1) genome HAU_v1Gossypium bickii
d6chwL0565Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d6chwL1115Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d6chwL1117Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d6chwL1398Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d8chwL0578Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
d8chwL1108Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
d8chwL1109Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
d8chwL1401Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
hwpscR1843Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR1881Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR1935Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hwpscR1998Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adyhwL0110Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL0112Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL0760Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL1824Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL2541Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhwL3199Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpfhwL0102Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL0104Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL0738Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL0740Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL1734Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpfhwL3052Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
ghchwL0110Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
ghchwL1786Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
ghchwL2511Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
ghchwL2513Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
ghchwL3145Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
ghuhwL0106Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
ghuhwL1779Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
ghuhwL2495Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
ghuhwL2497Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
ghuhwL3149Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
ghahwL0105Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
ghahwL0764Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
ghahwL1779Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
ghahwL2502Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
ghahwL3128Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
hwt2tR1528Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwt2tR1603Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwt2tR1643Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
hwtmhR631Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
hwtmhR643Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
d3hhwL0754Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3hhwL0756Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3hhwL1039Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3hhwL1715Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3hhwL3041Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
atthwL0111Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
atthwL0113Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
atthwL0781Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
atthwL1788Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
atthwL3110Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
aduhwL0112Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aduhwL0774Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aduhwL1800Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aduhwL2513Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aduhwL3154Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aemhwL0102Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL0734Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL1643Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemhwL2994Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
azmhwL0109Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
azmhwL0774Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
azmhwL1809Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
azmhwL3144Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
D5.v1.pred_00029213-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Gstu09G016730.1Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
Grai_09G016040.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
gene-E1A91_D09G145800v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gm0578100.1Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
Gsto_09G013290.1Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
rna-gnl|WGS_VKGI|Godar.D09G155300.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:JABFAC|Godav_00022728-RAGossypium davidsonii (D3d-27) genome ISU_v1Gossypium davidsonii
Goano.009G157900-1Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
Gbic_09G017210.1Gossypium bickii (G1) genome HAU_v1Gossypium bickii
EVM_prediction_Ga09G1466Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Gano_09G013240.1Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
Gar09G16520Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Glon_09G038400.1Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gheraf_09G016890.1Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
A1.A1_09G160100-1Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ghe09G17220.geneGhe09G17220.gene_WHU-A1_v1Gossypium herbaceumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ghe09G17220.CDS1Ghe09G17220.CDS1_WHU-A1_v1Gossypium herbaceumCDS
Ghe09G17220.CDS2Ghe09G17220.CDS2_WHU-A1_v1Gossypium herbaceumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ghe09G17220Ghe09G17220_WHU-A1_v1-proteinGossypium herbaceumpolypeptide
Ghe09G17220_WHU-A1_v1Ghe09G17220_WHU-A1_v1Gossypium herbaceumpolypeptide


Homology
BLAST of Ghe09G17220 vs. ExPASy Swiss-Prot
Match: DAPB2_ORYSJ (Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.228e-18
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY+L+V++SHQAGKLD SGTAKA+I+CF+KLG
Sbjct:  186 MEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLG 230          
BLAST of Ghe09G17220 vs. ExPASy Swiss-Prot
Match: DAPB1_ORYSJ (Probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAPB1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.645e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY L+VM+SHQA KLD SGTAKA+ISCFQKLG
Sbjct:  204 MEIMAEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLG 248          
BLAST of Ghe09G17220 vs. ExPASy Swiss-Prot
Match: DAPB2_ARATH (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPB2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.847e-18
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IM+EQFPGA  GY+L+VM+SHQA KLD SGTAKA+ISCFQKLG
Sbjct:  210 MEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLG 254          
BLAST of Ghe09G17220 vs. ExPASy Swiss-Prot
Match: DAPB1_ARATH (4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPB1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.198e-17
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY+L VM+SHQA KLD SGTAKA+ISCFQ+LG
Sbjct:  208 MEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELG 252          
BLAST of Ghe09G17220 vs. Araport11
Match: gnl|BL_ORD_ID|29016 (AT3G59890.2 | Dihydrodipicolinate reductase%2C bacterial/plant | Chr3:22124497-22126369 REVERSE LENGTH=343 | 201606)

HSP 1 Score: 78.5666 bits (192), Expect = 2.490e-19
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IM+EQFPGA  GY+L+VM+SHQA KLD SGTAKA+ISCFQKLG
Sbjct:  204 MEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLG 248          
BLAST of Ghe09G17220 vs. Araport11
Match: gnl|BL_ORD_ID|29015 (AT3G59890.1 | Dihydrodipicolinate reductase%2C bacterial/plant | Chr3:22124497-22126491 REVERSE LENGTH=349 | 201606)

HSP 1 Score: 78.1814 bits (191), Expect = 2.957e-19
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IM+EQFPGA  GY+L+VM+SHQA KLD SGTAKA+ISCFQKLG
Sbjct:  210 MEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLG 254          
BLAST of Ghe09G17220 vs. Araport11
Match: gnl|BL_ORD_ID|19455 (AT2G44040.1 | Dihydrodipicolinate reductase%2C bacterial/plant | Chr2:18221985-18223998 REVERSE LENGTH=347 | 201606)

HSP 1 Score: 76.6406 bits (187), Expect = 1.245e-18
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY+L VM+SHQA KLD SGTAKA+ISCFQ+LG
Sbjct:  208 MEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELG 252          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|763742938|gb|KJB10437.1| (hypothetical protein B456_001G202100 [Gossypium raimondii])

HSP 1 Score: 85.1149 bits (209), Expect = 7.442e-19
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  125 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 170          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|1365961053|ref|XP_024179973.1| (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like [Rosa chinensis] >gi|1358175403|gb|PRQ49878.1| putative 4-hydroxy-tetrahydrodipicolinate reductase [Rosa chinensis])

HSP 1 Score: 85.8853 bits (211), Expect = 1.036e-18
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA FGY+LQVM+SHQA KLDTSGTAKA+ISCFQKLG 
Sbjct:  208 MEIMAEQFPGAFFGYSLQVMESHQASKLDTSGTAKAVISCFQKLGV 253          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|728838995|gb|KHG18438.1| (Dihydrodipicolinate reductase 2, chloroplastic [Gossypium arboreum])

HSP 1 Score: 87.0409 bits (214), Expect = 1.057e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG
Sbjct:  666 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLG 710          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|1029055209|ref|XP_016755350.1| (PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like [Gossypium hirsutum])

HSP 1 Score: 85.8853 bits (211), Expect = 1.135e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|1029055040|ref|XP_016754665.1| (PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like isoform X2 [Gossypium hirsutum])

HSP 1 Score: 85.8853 bits (211), Expect = 1.135e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLG 244          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|763742936|gb|KJB10435.1| (hypothetical protein B456_001G202100 [Gossypium raimondii])

HSP 1 Score: 85.5001 bits (210), Expect = 1.303e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|1029135703|ref|XP_016745960.1| (PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like [Gossypium hirsutum])

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|823126169|ref|XP_012487832.1| (PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like [Gossypium raimondii] >gi|763742935|gb|KJB10434.1| hypothetical protein B456_001G202100 [Gossypium raimondii])

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|763778943|gb|KJB46066.1| (hypothetical protein B456_007G347100 [Gossypium raimondii])

HSP 1 Score: 85.5001 bits (210), Expect = 1.365e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. NCBI nr
Match: gi|1347721597|gb|PPS17659.1| (hypothetical protein GOBAR_AA02921 [Gossypium barbadense])

HSP 1 Score: 85.5001 bits (210), Expect = 1.379e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A0D2M0Z4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G202100 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.251e-19
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  125 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 170          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A2P6RTW7_ROSCH (Putative 4-hydroxy-tetrahydrodipicolinate reductase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0126841 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.706e-19
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA FGY+LQVM+SHQA KLDTSGTAKA+ISCFQKLG 
Sbjct:  208 MEIMAEQFPGAFFGYSLQVMESHQASKLDTSGTAKAVISCFQKLGV 253          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A0B0NVA4_GOSAR (Dihydrodipicolinate reductase 2, chloroplastic OS=Gossypium arboreum OX=29729 GN=F383_08564 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.882e-19
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG
Sbjct:  666 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLG 710          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A1U8PW24_GOSHI (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107963304 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.537e-19
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A1U8PU38_GOSHI (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107962686 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.537e-19
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLG 45
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLG 244          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A0D2QT96_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G202100 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.095e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A0D2PUD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G202100 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.135e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A1U8P4E1_GOSHI (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107954798 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.135e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A0D2SVL1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G347100 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.147e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Match: A0A2P5YPY3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA02921 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.159e-18
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGC 46
            M+IMAEQFPGA  GY+LQVM+SHQAGKLDTSGTAKAIISCFQKLG 
Sbjct:  200 MEIMAEQFPGAFSGYSLQVMESHQAGKLDTSGTAKAIISCFQKLGV 245          
The following BLAST results are available for this feature:
BLAST of Ghe09G17220 vs. ExPASy Swiss-Prot
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs UniProt Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
DAPB2_ORYSJ1.228e-1875.56Probable 4-hydroxy-tetrahydrodipicolinate reductas... [more]
DAPB1_ORYSJ1.645e-1880.00Probable 4-hydroxy-tetrahydrodipicolinate reductas... [more]
DAPB2_ARATH2.847e-1877.784-hydroxy-tetrahydrodipicolinate reductase 2, chlo... [more]
DAPB1_ARATH1.198e-1777.784-hydroxy-tetrahydrodipicolinate reductase 1, chlo... [more]
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BLAST of Ghe09G17220 vs. Araport11
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
gnl|BL_ORD_ID|290162.490e-1977.78AT3G59890.2 | Dihydrodipicolinate reductase%2C bac... [more]
gnl|BL_ORD_ID|290152.957e-1977.78AT3G59890.1 | Dihydrodipicolinate reductase%2C bac... [more]
gnl|BL_ORD_ID|194551.245e-1877.78AT2G44040.1 | Dihydrodipicolinate reductase%2C bac... [more]
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BLAST of Ghe09G17220 vs. NCBI nr
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|763742938|gb|KJB10437.1|7.442e-1986.96hypothetical protein B456_001G202100 [Gossypium ra... [more]
gi|1365961053|ref|XP_024179973.1|1.036e-1884.784-hydroxy-tetrahydrodipicolinate reductase 2, chlo... [more]
gi|728838995|gb|KHG18438.1|1.057e-1888.89Dihydrodipicolinate reductase 2, chloroplastic [Go... [more]
gi|1029055209|ref|XP_016755350.1|1.135e-1886.96PREDICTED: 4-hydroxy-tetrahydrodipicolinate reduct... [more]
gi|1029055040|ref|XP_016754665.1|1.135e-1888.89PREDICTED: 4-hydroxy-tetrahydrodipicolinate reduct... [more]
gi|763742936|gb|KJB10435.1|1.303e-1886.96hypothetical protein B456_001G202100 [Gossypium ra... [more]
gi|1029135703|ref|XP_016745960.1|1.351e-1886.96PREDICTED: 4-hydroxy-tetrahydrodipicolinate reduct... [more]
gi|823126169|ref|XP_012487832.1|1.351e-1886.96PREDICTED: 4-hydroxy-tetrahydrodipicolinate reduct... [more]
gi|763778943|gb|KJB46066.1|1.365e-1886.96hypothetical protein B456_007G347100 [Gossypium ra... [more]
gi|1347721597|gb|PPS17659.1|1.379e-1886.96hypothetical protein GOBAR_AA02921 [Gossypium barb... [more]
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BLAST of Ghe09G17220 vs. ExPASy TrEMBL
Analysis Date: 2020-04-17 (BLASTP of WHU_v1_a1 Gossypium herbaceum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0D2M0Z4_GOSRA6.251e-1986.96Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A2P6RTW7_ROSCH8.706e-1984.78Putative 4-hydroxy-tetrahydrodipicolinate reductas... [more]
A0A0B0NVA4_GOSAR8.882e-1988.89Dihydrodipicolinate reductase 2, chloroplastic OS=... [more]
A0A1U8PW24_GOSHI9.537e-1986.964-hydroxy-tetrahydrodipicolinate reductase 2, chlo... [more]
A0A1U8PU38_GOSHI9.537e-1988.894-hydroxy-tetrahydrodipicolinate reductase 2, chlo... [more]
A0A0D2QT96_GOSRA1.095e-1886.96Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0D2PUD2_GOSRA1.135e-1886.96Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A1U8P4E1_GOSHI1.135e-1886.964-hydroxy-tetrahydrodipicolinate reductase 2, chlo... [more]
A0A0D2SVL1_GOSRA1.147e-1886.96Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A2P5YPY3_GOSBA1.159e-1886.96Uncharacterized protein OS=Gossypium barbadense OX... [more]
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InterPro
Analysis Name: InterProScan WHU_v1_a1 Gossypium herbaceum proteins
Date Performed: 2020-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022663Dihydrodipicolinate reductase, C-terminalPFAMPF05173DapB_Ccoord: 3..42
e-value: 4.7E-6
score: 26.6
IPR023940Dihydrodipicolinate reductasePANTHERPTHR20836DIHYDRODIPICOLINATE REDUCTASEcoord: 1..47
NoneNo IPR availablePANTHERPTHR20836:SF44-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 1, CHLOROPLASTIC-RELATEDcoord: 1..47

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ghe09G17220_WHU-A1_v1 ID=Ghe09G17220_WHU-A1_v1; Name=Ghe09G17220; organism=Gossypium herbaceum; type=mRNA; length=150bp
ATGGACATCATGGCTGAGCAGTTTCCTGGAGCCTCCTTTGGGTATAACCT
ACAGGTGATGGACTCCCATCAAGCTGGCAAATTGGACACCTCTGGCACTG
CTAAGGCTATTATTTCTTGCTTTCAGAAACTGGGGTGTCATTTGACATGA
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protein sequence of Ghe09G17220_WHU-A1_v1

>Ghe09G17220_WHU-A1_v1 ID=Ghe09G17220_WHU-A1_v1; Name=Ghe09G17220_WHU-A1_v1; organism=Gossypium herbaceum; type=polypeptide; length=49bp
MDIMAEQFPGASFGYNLQVMDSHQAGKLDTSGTAKAIISCFQKLGCHLT
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mRNA from alignment at Chr09:70417693..70418287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ghe09G17220_WHU-A1_v1 ID=Ghe09G17220_WHU-A1_v1; Name=Ghe09G17220; organism=Gossypium herbaceum; type=mRNA; length=595bp; location=Sequence derived from: Chr09:70417693..70418287- (Gossypium herbaceum
ATGGACATCATGGCTGAGCAGTTTCCTGGAGCCTCCTTTGGGTATAACCT ACAGGTACTTCTTTCAATAAGGTTATTTGTTTTGAAAGTGCTTGAAAGAA CAATGTGTCAAATTAGGTTGATTAGGCATAACCAATAGTGTTATAAACAA TTGAGGCTGCAAAATACAACTGTTTGAAGCAATATCAAGAAGCCGGTTTG ATACATTCTGAAGAAATATCACGACTTGGAGCAGCAAAAACAAAACATAT GTGTCATATTTTGGATTTTACATTTGCGGATGGAATTATCCATTAGTGTT TACAAAAAACAGAGAGTTTGTTTGTAACAAGTTTTCTTGGGCTTGTGTTT ATGGTTTCTTGTCTTGTTCTTTGGATATGATAGTCCTTTGGAATGCCTCC TTTTTCTTAAATATTATTTCTATTAAGTTTTCTTAGGCACCATCTTTAGT ATTTTGTCCTATTGGTTGCATATTGCTAATCTTCATTGATCTTGATTAGG TGATGGACTCCCATCAAGCTGGCAAATTGGACACCTCTGGCACTGCTAAG GCTATTATTTCTTGCTTTCAGAAACTGGGGTGTCATTTGACATGA
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Coding sequence (CDS) from alignment at Chr09:70417693..70418287-

>Ghe09G17220_WHU-A1_v1 ID=Ghe09G17220_WHU-A1_v1; Name=Ghe09G17220; organism=Gossypium herbaceum; type=CDS; length=150bp; location=Sequence derived from: Chr09:70417693..70418287- (Gossypium herbaceum
ATGGACATCATGGCTGAGCAGTTTCCTGGAGCCTCCTTTGGGTATAACCT
ACAGGTGATGGACTCCCATCAAGCTGGCAAATTGGACACCTCTGGCACTG
CTAAGGCTATTATTTCTTGCTTTCAGAAACTGGGGTGTCATTTGACATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR022663DapB_C
IPR023940DHDPR_bac
Vocabulary: Biological Process
TermDefinition
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0055114obsolete oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:00088394-hydroxy-tetrahydrodipicolinate reductase