Gothu.00000914-RA, Gothu.00000914-RA_ISU-D1_v1 (mRNA) Gossypium thurberi

Transcript Overview
NameGothu.00000914-RA
Unique NameGothu.00000914-RA_ISU-D1_v1
TypemRNA
OrganismGossypium thurberi (G. thurberi)
Sequence length255
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM013386.1_chr09chromosomeCM013386.1_chr09:5079128..5079458 -Gossypium thurberi (D1-35) genome ISU_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abdtL0194Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abdtL1006Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abdtL1506Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
dtdtL049Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dtdtL127Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
acdtL1019Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
bhdtL1100Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
dtdtL448Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
acdtL1249Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
dtdtL496Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dtdtR509Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
acdtL1370Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
addtL0858Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bhdtL1444Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
acdtL1487Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
addtL0983Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bhdtL1576Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhdtL1683Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
addtL1244Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bzdtL0880Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
addtL1360Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bzdtL0999Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
addtL1457Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bhdtL2473Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhdtL2746Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bzdtL1268Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bhdtL3017Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bzdtL1386Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzdtL1480Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
addtL2173Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
dtgauR0937Gossypium australe (G2) genome CRI_v1.1Gossypium australe
dtgauR0969Gossypium australe (G2) genome CRI_v1.1Gossypium australe
dtgauR1035Gossypium australe (G2) genome CRI_v1.1Gossypium australe
dtgauR1047Gossypium australe (G2) genome CRI_v1.1Gossypium australe
dtgauR1052Gossypium australe (G2) genome CRI_v1.1Gossypium australe
addtL2370Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
dtfnR1142Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
addtL2487Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
dtfnR1184Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtfnR1195Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtfnR1199Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtfnR1202Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
addtL2587Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bzdtL2187Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzdtL2394Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzdtL2517Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
dtgbR1159Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bzdtL2618Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
dtgbR1191Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgbR1201Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgbR1230Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgbR1256Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgbR1266Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
dtgdR1338Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
dtgdR1369Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
dtgdR1380Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
dtgdR1408Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
dtghR1155Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtgdR1430Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
dtgdR1444Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
dtghR1182Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghR1194Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghR1221Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghR1248Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtghR1259Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
dtgkR0943Gossypioides kirkii genome ISU_v3Gossypioides kirkii
dtgkR0972Gossypioides kirkii genome ISU_v3Gossypioides kirkii
dtgkR0987Gossypioides kirkii genome ISU_v3Gossypioides kirkii
dtgkR1039Gossypioides kirkii genome ISU_v3Gossypioides kirkii
dtgkR1054Gossypioides kirkii genome ISU_v3Gossypioides kirkii
dtgkR1058Gossypioides kirkii genome ISU_v3Gossypioides kirkii
dtghzR1307Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghzR1341Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghzR1351Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghzR1382Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtghtR1425Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtgrbR0994Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtghzR1411Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtgrbR1053Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtghzR1421Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
dtgrbR1056Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtghtR1453Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtghtR1459Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtghtR1465Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtghtR1498Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dtgrbR1096Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtgrbR1111Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtgrbR1115Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtgrbR1117Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
dtghtR1519Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dthbR2004Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dtghtR1530Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
dthbR2039Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dthbR2114Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dtgtbR1162Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dtgtbR1180Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dthbR2166Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dthbR2179Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dthbR2256Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
dtgtbR1212Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dtgtbR1222Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dtgtbR1232Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
dthgsR1244Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dthgsR1274Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dthgsR1278Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dthgsR1282Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dthgsR1309Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dtrbR1503Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
dtrbR1522Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
dtrbR1528Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
dthgsR1333Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dtrbR1566Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
dthgsR1342Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
dtrjR707Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
dtrjR783Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
dtrjR794Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
dtrjR801Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
dtrbR1691Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
dtrbR1718Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
dthjR1456Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dthnR1566Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthjR1479Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dthjR1486Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dthjR1492Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dthnR1593Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthjR1521Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dthnR1601Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1606Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1653Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthjR1549Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dthjR1562Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
dthnR1693Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dttoR1234Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dthnR1706Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthnR1711Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
dthzR1488Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dttoR1265Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dttoR1273Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dttoR1299Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dthzR1513Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1522Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1526Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1557Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dttoR1322Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dttoR1333Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
dthzR1580Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthzR1591Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
dthwR1180Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dthwR1263Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dthwR1306Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dthwR1320Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dthwR1327Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
dttwR1548Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1557Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1563Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1604Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1605Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1625Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1631Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dttwR1636Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
awdtL0927Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awdtL1133Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awdtL1249Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awdtL1352Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
dtuhR1259Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtuhR1287Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtuhR1291Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtuhR1296Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtuhR1325Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtuhR1347Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtuhR1360Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtdttR700Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtdttR727Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtdttR743Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtdttR755Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtdttR761Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dfidtL061Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfidtL321Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfidtL330Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfidtL582Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfidtL701Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dfidtL827Gossypium aridum (D4) genome ISU_v1Gossypium aridum
dtgtiR1116Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR1150Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR1180Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR1209Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR1227Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dtgtiR1242Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dqidtL073Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidtL075Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidtL321Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidtL416Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidtL421Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqidtL561Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dtgroR1242Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR1291Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR1292Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR1332Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR1379Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR1386Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
dtgroR1399Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium

Orthologs
Gene/TranscriptAssemblySpecies
Kirkii_Juiced.00g090310.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
Ghi_A05G06351Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rna-gnl|WGS:JABEZX|Golob_00028093-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
D5.v1.pred_00000905-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gene-E1A91_A07G122300v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
GH_A05G0811Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Grot_13G038640.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
Gbscaffold19528.15.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
gene-E1A91_A05G084400v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Cotton_D_gene_10028297Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
D5.v1.pred_00034663-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
rna-gnl|WGS_VKGI|Godar.A05G085200.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:VKDL|Gobar.A07G121000.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
CotAD_42415Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Golon.007G130500-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Gohir.A07G111250.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gbscaffold30211.4.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
Ghe07G13320Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
Gohir.D07G115000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
TURN.05g140740.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Ghe05G08660Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS_VKGI|Godar.D05G086100.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS:VKDL|Gobar.D05G081700.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Grot_07G013030.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
Gbscaffold15639.3.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
GB_D07G1197Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Gohir.A05G079200.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gbar_D07G012030.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gene-E1A91_D05G086000v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gh_D05G080400.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Golon.005G086000-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Cotton_A_13861Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
Ghicr24_D07G114800.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gh_A05G0654Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
TURN.07g192340.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
rna-gnl|WGS_VKGI|Godar.D07G129800.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gene-EPI10_013217-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
Gbscaffold4759.20.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
CotAD_12368Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Ghicr24_D05G078700.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
GB_A05G0816Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
EVM_prediction_Ga05G0853Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
rna-gnl|WGS:VKDL|Gobar.A05G083000.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
GB_D05G0799Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
EVM_prediction_Ga07G1209Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Gar07G13600Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Gorai.009G083700.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
GH_D05G0804Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gbar_A05G007680.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Gh_A05G066500.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghir_A07G011880.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gene-E1A91_D07G126400v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
GH_D07G1195Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
rna-gnl|WGS_VKGE|Gotom.A07G128900.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS_VKGI|Godar.A07G129400.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
rna-gnl|WGS_VKGE|Gotom.D07G128700.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Ghicr24_A05G084600.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gbar_A07G011670.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Ghi_D07G06016Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
Cotton_D_gene_10032046Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
Gh_D05G0799Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghicr24_A07G120600.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gohir.D05G082100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rna-gnl|WGS:JABFAD|Gohar_00035209-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
Gorai.001G123200.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Gbar_D05G008180.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Gohir.D07G115000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
gene-EPI10_033779-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
rna-gnl|WGS:JABFAA|Goari_00000933-RAGossypium aridum (D4) genome ISU_v1Gossypium aridum
Ghir_A05G008230.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Ghir_D07G011920.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gh_D07G117900.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Gohir.A05G079200.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Ghi_A05G00566Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
Cotton_A_09604Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
rna-gnl|WGS_VKGE|Gotom.A05G085900.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gohir.D05G082100.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gohir.A07G111200.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gar05G08270Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
CotAD_46883Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Ghir_D05G008250.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
rna-gnl|WGS_VKGE|Gotom.D05G087500.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
GB_A07G1198Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:VKDL|Gobar.D07G122600.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gh_D07G1090Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
EVM0033171.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
EVM0035385.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gothu.00000914Gothu.00000914_ISU-D1_v1Gossypium thurberigene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gothu.00000914-RA:exon:4969Gothu.00000914-RA.exon.2_ISU-D1_v1Gossypium thurberiexon
Gothu.00000914-RA:exon:4970Gothu.00000914-RA.exon.1_ISU-D1_v1Gossypium thurberiexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gothu.00000914-RA:cdsGothu.00000914-RA.cds.2_ISU-D1_v1Gossypium thurberiCDS
Gothu.00000914-RA:cdsGothu.00000914-RA.cds.1_ISU-D1_v1Gossypium thurberiCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Gothu.00000914-RAGothu.00000914-RA_ISU-D1_v1-proteinGossypium thurberipolypeptide
Gothu.00000914-RA_ISU-D1_v1Gothu.00000914-RA_ISU-D1_v1Gossypium thurberipolypeptide


Homology
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A1U8JKN2_GOSHI (photosystem I subunit O-like OS=Gossypium hirsutum OX=3635 GN=LOC107906680 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.569e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 117          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A2P5X2A9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23210 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.737e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 117          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A0D2RWK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G083700 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.341e-53
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPL SQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLASQFW 117          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A2P5YN71_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03526 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 8.182e-50
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHF TPPPLTSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFTTPPPLTSQFW 116          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A0D2QPJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G123200 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 9.969e-50
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHFPTPPP TSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFPTPPPPTSQFW 116          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A0D2PQG1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G123200 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.212e-49
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHFPTPPP TSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFPTPPPPTSQFW 116          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A2P5VQL1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39582 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.242e-49
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHFPTPPP TSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFPTPPPPTSQFW 116          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A0B0MWX4_GOSAR (DNA mismatch repair mutL OS=Gossypium arboreum OX=29729 GN=F383_33777 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.849e-48
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGG F   ERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGNF---ERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 114          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A067DED3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032156mg PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.312e-48
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            F+KS V ARNPLR+AGACGGK TCFERDWLR D NVIGFGLIGW+APSSIPAI+GKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   32 FVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115          
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Match: A0A067F515_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032153mg PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.869e-48
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            F+KS V ARNPLR+AGACGGK TCFERDWLR D NVIGFGLIGW+APSSIPAI+GKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   32 FVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115          
BLAST of Gothu.00000914-RA vs. ExPASy Swiss-Prot
Match: PSAO_ARATH (Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.092e-46
Identity = 69/84 (82.14%), Postives = 78/84 (92.86%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLK  ++A+NPLRLAGA GG+ TCFER+WLRRD NV+GFGLIGW+APSSIPAI+GKSLTGLFF+SIGTELAHFPTPP LTSQFW
Sbjct:   28 FLKPTLSAKNPLRLAGASGGRVTCFERNWLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111          
BLAST of Gothu.00000914-RA vs. Araport11
Match: gnl|BL_ORD_ID|1554 (AT1G08380.1 | photosystem I subunit O | Chr1:2641004-2641739 REVERSE LENGTH=140 | 201606)

HSP 1 Score: 147.517 bits (371), Expect = 3.212e-47
Identity = 69/84 (82.14%), Postives = 78/84 (92.86%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLK  ++A+NPLRLAGA GG+ TCFER+WLRRD NV+GFGLIGW+APSSIPAI+GKSLTGLFF+SIGTELAHFPTPP LTSQFW
Sbjct:   28 FLKPTLSAKNPLRLAGASGGRVTCFERNWLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|1029051111|ref|XP_016689238.1| (PREDICTED: photosystem I subunit O-like [Gossypium hirsutum])

HSP 1 Score: 173.326 bits (438), Expect = 6.629e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 117          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|1347697734|gb|PPR97463.1| (hypothetical protein GOBAR_AA23210 [Gossypium barbadense])

HSP 1 Score: 172.94 bits (437), Expect = 9.211e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 117          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|823229666|ref|XP_012447572.1| (PREDICTED: photosystem I subunit O-like [Gossypium raimondii] >gi|763788592|gb|KJB55588.1| hypothetical protein B456_009G083700 [Gossypium raimondii])

HSP 1 Score: 171.4 bits (433), Expect = 2.787e-53
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPL SQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLASQFW 117          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|1050569053|ref|XP_017605247.1| (PREDICTED: photosystem I subunit O-like [Gossypium arboreum])

HSP 1 Score: 168.318 bits (425), Expect = 4.611e-52
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLT LFFESIGT+LAHFPTPPPLTSQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTCLFFESIGTDLAHFPTPPPLTSQFW 117          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|1347720917|gb|PPS17039.1| (hypothetical protein GOBAR_AA03526 [Gossypium barbadense])

HSP 1 Score: 161.384 bits (407), Expect = 9.741e-50
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHF TPPPLTSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFTTPPPLTSQFW 116          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|763741606|gb|KJB09105.1| (hypothetical protein B456_001G123200 [Gossypium raimondii])

HSP 1 Score: 161.384 bits (407), Expect = 1.187e-49
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHFPTPPP TSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFPTPPPPTSQFW 116          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|1369018796|ref|WP_106474356.1| (photosystem I protein PsaO [Acinetobacter baumannii] >gi|1362360665|gb|PSE94566.1| photosystem I protein PsaO [Acinetobacter baumannii])

HSP 1 Score: 160.614 bits (405), Expect = 5.657e-49
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGV+ARNPLRLAGA  GKFTCF+RDWLRRD NVIGFGLIGW+APSS+PAIDGKSLTGLFFESIGTELAHFPTPP LTSQFW
Sbjct:   34 FLKSGVSARNPLRLAGASRGKFTCFQRDWLRRDLNVIGFGLIGWLAPSSVPAIDGKSLTGLFFESIGTELAHFPTPPALTSQFW 117          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|823123727|ref|XP_012477118.1| (PREDICTED: photosystem I subunit O-like [Gossypium raimondii] >gi|763741605|gb|KJB09104.1| hypothetical protein B456_001G123200 [Gossypium raimondii])

HSP 1 Score: 160.229 bits (404), Expect = 7.395e-49
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHFPTPPP TSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFPTPPPPTSQFW 116          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|1347675782|gb|PPR81134.1| (hypothetical protein GOBAR_AA39582 [Gossypium barbadense])

HSP 1 Score: 160.229 bits (404), Expect = 8.621e-49
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKS V  RNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAI+GKSLTGL FESIGTELAHFPTPPP TSQFW
Sbjct:   33 FLKSSVRGRNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAINGKSLTGLLFESIGTELAHFPTPPPPTSQFW 116          
BLAST of Gothu.00000914-RA vs. NCBI nr
Match: gi|728826206|gb|KHG06613.1| (DNA mismatch repair mutL [Gossypium arboreum])

HSP 1 Score: 158.688 bits (400), Expect = 3.392e-48
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0
Query:    1 FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 84
            FLKSGVTARNPLRLAGACGG F   ERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct:   34 FLKSGVTARNPLRLAGACGGNF---ERDWLRRDFNVIGFGLIGWIAPSSIPAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW 114          
The following BLAST results are available for this feature:
BLAST of Gothu.00000914-RA vs. ExPASy TrEMBL
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1U8JKN2_GOSHI5.569e-54100.00photosystem I subunit O-like OS=Gossypium hirsutum... [more]
A0A2P5X2A9_GOSBA7.737e-54100.00Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2RWK6_GOSRA2.341e-5398.81Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A2P5YN71_GOSBA8.182e-5092.86Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2QPJ0_GOSRA9.969e-5092.86Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0D2PQG1_GOSRA6.212e-4992.86Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A2P5VQL1_GOSBA7.242e-4992.86Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0B0MWX4_GOSAR2.849e-4895.24DNA mismatch repair mutL OS=Gossypium arboreum OX=... [more]
A0A067DED3_CITSI8.312e-4889.29Uncharacterized protein OS=Citrus sinensis OX=2711... [more]
A0A067F515_CITSI8.869e-4889.29Uncharacterized protein OS=Citrus sinensis OX=2711... [more]
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BLAST of Gothu.00000914-RA vs. ExPASy Swiss-Prot
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
PSAO_ARATH3.092e-4682.14Photosystem I subunit O OS=Arabidopsis thaliana OX... [more]
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BLAST of Gothu.00000914-RA vs. Araport11
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
gnl|BL_ORD_ID|15543.212e-4782.14AT1G08380.1 | photosystem I subunit O | Chr1:26410... [more]
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BLAST of Gothu.00000914-RA vs. NCBI nr
Analysis Date: 2020-02-21 (BLASTP of ISU_v1_a1 Gossypium thurberii proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1029051111|ref|XP_016689238.1|6.629e-54100.00PREDICTED: photosystem I subunit O-like [Gossypium... [more]
gi|1347697734|gb|PPR97463.1|9.211e-54100.00hypothetical protein GOBAR_AA23210 [Gossypium barb... [more]
gi|823229666|ref|XP_012447572.1|2.787e-5398.81PREDICTED: photosystem I subunit O-like [Gossypium... [more]
gi|1050569053|ref|XP_017605247.1|4.611e-5297.62PREDICTED: photosystem I subunit O-like [Gossypium... [more]
gi|1347720917|gb|PPS17039.1|9.741e-5092.86hypothetical protein GOBAR_AA03526 [Gossypium barb... [more]
gi|763741606|gb|KJB09105.1|1.187e-4992.86hypothetical protein B456_001G123200 [Gossypium ra... [more]
gi|1369018796|ref|WP_106474356.1|5.657e-4990.48photosystem I protein PsaO [Acinetobacter baumanni... [more]
gi|823123727|ref|XP_012477118.1|7.395e-4992.86PREDICTED: photosystem I subunit O-like [Gossypium... [more]
gi|1347675782|gb|PPR81134.1|8.621e-4992.86hypothetical protein GOBAR_AA39582 [Gossypium barb... [more]
gi|728826206|gb|KHG06613.1|3.392e-4895.24DNA mismatch repair mutL [Gossypium arboreum][more]
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InterPro
Analysis Name: InterProScan Analysis for ISU_v1_a1 Gossypium thurberii proteins
Date Performed: 2020-02-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017498Photosystem I PsaOPANTHERPTHR36311FAMILY NOT NAMEDcoord: 1..84

Sequences
The following sequences are available for this feature:

mRNA sequence

>Gothu.00000914-RA_ISU-D1_v1 ID=Gothu.00000914-RA_ISU-D1_v1; Name=Gothu.00000914-RA; organism=Gossypium thurberi; type=mRNA; length=255bp
TTTTTGAAATCTGGGGTGACGGCTAGGAACCCTTTGAGGCTGGCTGGTGC
TTGTGGGGGCAAGTTTACTTGCTTCGAGAGAGACTGGCTACGAAGGGACT
TTAACGTGATAGGATTTGGACTGATTGGGTGGATAGCACCATCTAGCATA
CCGGCCATCGATGGGAAGAGCTTGACTGGCCTTTTCTTTGAAAGCATTGG
AACTGAGCTCGCTCACTTCCCTACACCTCCGCCTCTTACCTCTCAATTCT
GGTAA
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protein sequence of Gothu.00000914-RA_ISU-D1_v1

>Gothu.00000914-RA_ISU-D1_v1 ID=Gothu.00000914-RA_ISU-D1_v1; Name=Gothu.00000914-RA_ISU-D1_v1; organism=Gossypium thurberi; type=polypeptide; length=84bp
FLKSGVTARNPLRLAGACGGKFTCFERDWLRRDFNVIGFGLIGWIAPSSI
PAIDGKSLTGLFFESIGTELAHFPTPPPLTSQFW
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mRNA from alignment at CM013386.1_chr09:5079128..5079458-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gothu.00000914-RA_ISU-D1_v1 ID=Gothu.00000914-RA_ISU-D1_v1; Name=Gothu.00000914-RA; organism=Gossypium thurberi; type=mRNA; length=331bp; location=Sequence derived from: CM013386.1_chr09:5079128..5079458- (Gossypium thurberi
TTTTTGAAATCTGGGGTGACGGCTAGGAACCCTTTGAGGCTGGCTGGTGC TTGTGGGGGCAAGTTTACTTGGTGAGTAATTTTGGTTAGTTTTGGATTAT TTAATTAAAATTAATGGTGGTAATTTGATGTTTAAACATGGGGGAAGCTT CGAGAGAGACTGGCTACGAAGGGACTTTAACGTGATAGGATTTGGACTGA TTGGGTGGATAGCACCATCTAGCATACCGGCCATCGATGGGAAGAGCTTG ACTGGCCTTTTCTTTGAAAGCATTGGAACTGAGCTCGCTCACTTCCCTAC ACCTCCGCCTCTTACCTCTCAATTCTGGTAA
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Coding sequence (CDS) from alignment at CM013386.1_chr09:5079128..5079458-

>Gothu.00000914-RA_ISU-D1_v1 ID=Gothu.00000914-RA_ISU-D1_v1; Name=Gothu.00000914-RA; organism=Gossypium thurberi; type=CDS; length=255bp; location=Sequence derived from: CM013386.1_chr09:5079128..5079458- (Gossypium thurberi
TTTTTGAAATCTGGGGTGACGGCTAGGAACCCTTTGAGGCTGGCTGGTGC
TTGTGGGGGCAAGTTTACTTGCTTCGAGAGAGACTGGCTACGAAGGGACT
TTAACGTGATAGGATTTGGACTGATTGGGTGGATAGCACCATCTAGCATA
CCGGCCATCGATGGGAAGAGCTTGACTGGCCTTTTCTTTGAAAGCATTGG
AACTGAGCTCGCTCACTTCCCTACACCTCCGCCTCTTACCTCTCAATTCT
GGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR017498PSI_PsaO