rna-gnl|WGS_VKGE|Gotom.D13G156800.1, rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1 (mRNA) Gossypium tomentosum
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Transcript Overview
Cross References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1029087578|ref|XP_016703900.1| (PREDICTED: uncharacterized protein LOC107918828 [Gossypium hirsutum]) HSP 1 Score: 285.419 bits (729), Expect = 1.709e-97 Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSI+EGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN
Sbjct: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIKEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|823266365|ref|XP_012465883.1| (PREDICTED: uncharacterized protein LOC105784524 [Gossypium raimondii] >gi|823266367|ref|XP_012465884.1| PREDICTED: uncharacterized protein LOC105784524 [Gossypium raimondii] >gi|763814564|gb|KJB81416.1| hypothetical protein B456_013G144700 [Gossypium raimondii]) HSP 1 Score: 282.722 bits (722), Expect = 2.304e-96 Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0
Query: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSI+EGQGQV AKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN
Sbjct: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIKEGQGQVVAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1029024139|ref|XP_016675887.1| (PREDICTED: uncharacterized protein LOC107895152 [Gossypium hirsutum] >gi|1029024141|ref|XP_016675888.1| PREDICTED: uncharacterized protein LOC107895152 [Gossypium hirsutum] >gi|1029024143|ref|XP_016675889.1| PREDICTED: uncharacterized protein LOC107895152 [Gossypium hirsutum]) HSP 1 Score: 255.758 bits (652), Expect = 2.012e-85 Identity = 125/139 (89.93%), Postives = 132/139 (94.96%), Query Frame = 0
Query: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
M+LAV+CKNYMM PFL SRFQYSMEP KRHFIL KKPKRK+KSTKYMKSFERLK+DMKK SK QQSI+EGQGQVEAKFNAIEQECKQL DEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTG+LREIVGRD+
Sbjct: 1 MSLAVLCKNYMMRPFLSSRFQYSMEPLKRHFILRKKPKRKMKSTKYMKSFERLKIDMKKISKEQQSIKEGQGQVEAKFNAIEQECKQLCDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGLLREIVGRDD 139
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1050594183|ref|XP_017618546.1| (PREDICTED: uncharacterized protein LOC108463109 [Gossypium arboreum] >gi|1050594185|ref|XP_017618547.1| PREDICTED: uncharacterized protein LOC108463109 [Gossypium arboreum] >gi|1050594187|ref|XP_017618548.1| PREDICTED: uncharacterized protein LOC108463109 [Gossypium arboreum] >gi|1050594189|ref|XP_017618549.1| PREDICTED: uncharacterized protein LOC108463109 [Gossypium arboreum]) HSP 1 Score: 255.373 bits (651), Expect = 2.675e-85 Identity = 126/139 (90.65%), Postives = 131/139 (94.24%), Query Frame = 0
Query: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
M+LAV+CKNYMM PFL SRFQYSMEP KRHFIL KKPKRK+KSTKYMKSFERLK+DMKK SK QQSI+EGQGQVEAKFNAIEQECKQL DEIDLMIRCSANTQIRL LMFSILKARQQADFGTAAQLTGVLREIVGRDN
Sbjct: 1 MSLAVLCKNYMMRPFLSSRFQYSMEPLKRHFILRKKPKRKMKSTKYMKSFERLKIDMKKISKEQQSIKEGQGQVEAKFNAIEQECKQLCDEIDLMIRCSANTQIRLRLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1344109197|gb|PPD82878.1| (hypothetical protein GOBAR_DD20186 [Gossypium barbadense]) HSP 1 Score: 220.32 bits (560), Expect = 4.066e-72 Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 0
Query: 24 MEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLR 132
MEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSI+EGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLR
Sbjct: 1 MEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIKEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLR 109
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1347679392|gb|PPR83564.1| (hypothetical protein GOBAR_AA37147 [Gossypium barbadense]) HSP 1 Score: 184.882 bits (468), Expect = 6.243e-58 Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 0
Query: 41 IKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
+KSTKYMKSFERLK+DMKK SK QQSI+EGQGQVEAKFNAIEQECKQL DEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTG+LREIVGRD+
Sbjct: 1 MKSTKYMKSFERLKIDMKKISKEQQSIKEGQGQVEAKFNAIEQECKQLCDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGLLREIVGRDD 99
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|728824255|gb|KHG05688.1| (Glycine--tRNA ligase alpha subunit [Gossypium arboreum]) HSP 1 Score: 184.496 bits (467), Expect = 9.366e-58 Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0
Query: 41 IKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
+KSTKYMKSFERLK+DMKK SK QQSI+EGQGQVEAKFNAIEQECKQL DEIDLMIRCSANTQIRL LMFSILKARQQADFGTAAQLTGVLREIVGRDN
Sbjct: 1 MKSTKYMKSFERLKIDMKKISKEQQSIKEGQGQVEAKFNAIEQECKQLCDEIDLMIRCSANTQIRLRLMFSILKARQQADFGTAAQLTGVLREIVGRDN 99
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1063514349|ref|XP_017980038.1| (PREDICTED: uncharacterized protein LOC18507237 isoform X1 [Theobroma cacao]) HSP 1 Score: 132.109 bits (331), Expect = 3.815e-37 Identity = 73/117 (62.39%), Postives = 86/117 (73.50%), Query Frame = 0
Query: 24 MEPSKRHFILSKKPKRKIKSTKYMKS-FERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
ME S+R FI +K K S KYM+ F++LK +MK+ SK QQSI+EGQ QV AKF AIE+EC+QLR E +IR SANTQIRL LMF+ILKAR+Q DF AA LT LREIV RDN
Sbjct: 1 METSRRRFISGRKGK---SSAKYMRRRFKKLKEEMKEISKEQQSIREGQRQVAAKFKAIEEECEQLRKETHQIIRQSANTQIRLSLMFNILKAREQGDFSKAANLTQRLREIVARDN 114
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1063514353|ref|XP_017980040.1| (PREDICTED: uncharacterized protein LOC18507190 [Theobroma cacao]) HSP 1 Score: 130.954 bits (328), Expect = 1.255e-36 Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 0
Query: 24 MEPSKRHFILSKKPKRKIKSTKYMKS-FERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
ME S+R FI +K K S KYM+ F++LK +MK+ SK QQSI+EGQ QV KF AIE+EC+QLR E +IR SANTQIRL LMF+ILKAR+Q DF AA LT +LREI+ RDN
Sbjct: 1 METSRRRFISGRKGK---SSAKYMRRRFKKLKEEMKEISKEQQSIREGQRQVAVKFKAIEEECEQLRKETHQIIRQSANTQIRLSLMFNILKAREQGDFSKAANLTQLLREIIARDN 114
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Match: gi|1204931151|ref|XP_021298822.1| (uncharacterized protein LOC110427593 isoform X2 [Herrania umbratica]) HSP 1 Score: 124.79 bits (312), Expect = 2.594e-34 Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 0
Query: 43 STKYMKS-FERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
S KYMK F++LK +MK+ S+ QQSI+EGQ QV AKF AIE+EC+QLR E + +IR SANTQIRL LMF+ILKAR+Q DF AA LT +LREIV RDN
Sbjct: 6 SAKYMKRRFKKLKEEMKEISRQQQSIREGQRQVAAKFKAIEEECEQLRQETNRIIRQSANTQIRLSLMFNILKAREQGDFSKAANLTQLLREIVTRDN 103
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A1U8KN88_GOSHI (uncharacterized protein LOC107918828 OS=Gossypium hirsutum OX=3635 GN=LOC107918828 PE=4 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 1.435e-97 Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSI+EGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN
Sbjct: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIKEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A0D2VDS8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G144700 PE=4 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 1.935e-96 Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0
Query: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSI+EGQGQV AKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN
Sbjct: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIKEGQGQVVAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A1U8IHP8_GOSHI (uncharacterized protein LOC107895152 OS=Gossypium hirsutum OX=3635 GN=LOC107895152 PE=4 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.690e-85 Identity = 125/139 (89.93%), Postives = 132/139 (94.96%), Query Frame = 0
Query: 1 MALAVVCKNYMMCPFLLSRFQYSMEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
M+LAV+CKNYMM PFL SRFQYSMEP KRHFIL KKPKRK+KSTKYMKSFERLK+DMKK SK QQSI+EGQGQVEAKFNAIEQECKQL DEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTG+LREIVGRD+
Sbjct: 1 MSLAVLCKNYMMRPFLSSRFQYSMEPLKRHFILRKKPKRKMKSTKYMKSFERLKIDMKKISKEQQSIKEGQGQVEAKFNAIEQECKQLCDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGLLREIVGRDD 139
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A2P5R7Z1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20186 PE=4 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 3.416e-72 Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 0
Query: 24 MEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLR 132
MEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSI+EGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLR
Sbjct: 1 MEPSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIKEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLR 109
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A2P5VXL1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37147 PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 5.245e-58 Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 0
Query: 41 IKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
+KSTKYMKSFERLK+DMKK SK QQSI+EGQGQVEAKFNAIEQECKQL DEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTG+LREIVGRD+
Sbjct: 1 MKSTKYMKSFERLKIDMKKISKEQQSIKEGQGQVEAKFNAIEQECKQLCDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGLLREIVGRDD 99
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A0B0MUA5_GOSAR (Glycine--tRNA ligase alpha subunit OS=Gossypium arboreum OX=29729 GN=F383_31583 PE=4 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 7.868e-58 Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0
Query: 41 IKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
+KSTKYMKSFERLK+DMKK SK QQSI+EGQGQVEAKFNAIEQECKQL DEIDLMIRCSANTQIRL LMFSILKARQQADFGTAAQLTGVLREIVGRDN
Sbjct: 1 MKSTKYMKSFERLKIDMKKISKEQQSIKEGQGQVEAKFNAIEQECKQLCDEIDLMIRCSANTQIRLRLMFSILKARQQADFGTAAQLTGVLREIVGRDN 99
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: S1RW68_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_045917 PE=4 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 9.069e-33 Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = 0
Query: 43 STKYMKS-FERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
S KYM+ F++LK +MK+ SK QQSI+EGQ QV AKF AIE+EC+QLR E +IR SANTQIRL LMF+ILKAR+Q DF AA LT LREIV RDN
Sbjct: 71 SAKYMRRRFKKLKEEMKEISKEQQSIREGQRQVAAKFKAIEEECEQLRKETHQIIRQSANTQIRLSLMFNILKAREQGDFSKAANLTQRLREIVARDN 168
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A2P5WZM2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA24129 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.849e-32 Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0
Query: 69 EGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLR 132
EG+G VEAKFNAIEQECKQLRDE DLMIR SANTQIRLGLMFSILKARQQADFGTAAQLT VLR
Sbjct: 14 EGKGLVEAKFNAIEQECKQLRDETDLMIRPSANTQIRLGLMFSILKARQQADFGTAAQLTRVLR 77
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: S1SIB7_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_046287 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.434e-31 Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 0
Query: 43 STKYMKS-FERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
S KYM+ F++LK MK+ SK QQSI+EGQ QV KF AIE+EC+QLR E +IR SANTQIRL LMF+IL AR+Q DF AA LT +LREI+ RDN
Sbjct: 19 SEKYMRRRFKKLKEQMKEISKEQQSIREGQRQVAVKFKAIEEECEQLRKETHQIIRQSANTQIRLSLMFNILMAREQGDFSKAANLTQLLREIIARDN 116
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Match: A0A061FAZ9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032675 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.650e-27 Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 0
Query: 26 PSKRHFILSKKPKRKIKSTKYMKSFERLKMDMKKTSKVQQSIQEGQGQVEAKFNAIEQECKQLRDEIDLMIRCSANTQIRLGLMFSILKARQQADFGTAAQLTGVLREIVGRDN 139
P H L +K +R+ ++ K +L+ +M+K S+ Q+ I+EGQ QV+ KF AIEQEC QLR+E +L+I+ SANTQ+RL LMF ILKAR+ DF AAQLT LRE+V N
Sbjct: 16 PKVSHGSLQRKHQRR-RTEKLNARMRQLRAEMEKISEEQREIKEGQMQVKQKFEAIEQECDQLRNETNLIIQQSANTQLRLALMFRILKAREDQDFNRAAQLTQALRELVTMQN 128 The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. NCBI nr
Analysis Date: 2020-01-11 (BLASTP of HGS_v1.1 Gossypium tomentosum proteins vs NCBI nr) Total hits: 10
BLAST of rna-gnl|WGS_VKGE|Gotom.D13G156800.1 vs. ExPASy TrEMBL
Analysis Date: 2020-01-15 (BLASTP of HGS_v1.1 Gossypium tomentosum proteins vs UniProt TrEMBL) Total hits: 10
Sequences
The
following sequences are available for this feature:
protein sequence of rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1 >rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1; organism=Gossypium tomentosum; type=polypeptide; length=139bpback to top mRNA from alignment at CM017635.1:42716098..42718326- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D13G156800.1; organism=Gossypium tomentosum; type=mRNA; length=2229bp; location=Sequence derived from: CM017635.1:42716098..42718326- (Gossypium tomentosumback to top Coding sequence (CDS) from alignment at CM017635.1:42716098..42718326- >rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D13G156800.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D13G156800.1; organism=Gossypium tomentosum; type=CDS; length=420bp; location=Sequence derived from: CM017635.1:42716098..42718326- (Gossypium tomentosumback to top |